data_5H75 # _model_server_result.job_id rB9fUi8XqWPG5fT6merFKw _model_server_result.datetime_utc '2024-10-12 12:23:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h75 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 5H75 # _exptl.entry_id 5H75 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H75 _cell.length_a 167.729 _cell.length_b 167.729 _cell.length_c 167.729 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 5H75 _atom_sites.fract_transf_matrix[1][1] 0.005962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 301 1 FAD FAD . F 2 FAD B 1 301 2 FAD FAD . G 2 FAD C 1 301 3 FAD FAD . H 2 FAD D 1 301 4 FAD FAD . I 3 HOH B 1 401 8 HOH HOH . J 3 HOH C 1 401 2 HOH HOH . J 3 HOH C 2 402 11 HOH HOH . J 3 HOH C 3 403 10 HOH HOH . J 3 HOH C 4 404 4 HOH HOH . J 3 HOH C 5 405 9 HOH HOH . K 3 HOH D 1 401 7 HOH HOH . K 3 HOH D 2 402 6 HOH HOH . K 3 HOH D 3 403 5 HOH HOH . K 3 HOH D 4 404 1 HOH HOH . K 3 HOH D 5 405 3 HOH HOH . K 3 HOH D 6 406 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . G 2 -10.37 13.343 25.6 1 143.27 ? PA FAD 301 C 1 HETATM 2 O O1A FAD . . . G 2 -9.496 14.564 25.435 1 138.35 -1 O1A FAD 301 C 1 HETATM 3 O O2A FAD . . . G 2 -9.742 11.972 25.681 1 149.18 ? O2A FAD 301 C 1 HETATM 4 O O5B FAD . . . G 2 -11.45 13.333 24.407 1 203.48 ? O5B FAD 301 C 1 HETATM 5 C C5B FAD . . . G 2 -11.038 13.111 23.059 1 216.91 ? C5B FAD 301 C 1 HETATM 6 C C4B FAD . . . G 2 -9.938 14.1 22.696 1 228.43 ? C4B FAD 301 C 1 HETATM 7 O O4B FAD . . . G 2 -8.659 13.522 22.971 1 240.21 ? O4B FAD 301 C 1 HETATM 8 C C3B FAD . . . G 2 -9.983 14.456 21.217 1 229.71 ? C3B FAD 301 C 1 HETATM 9 O O3B FAD . . . G 2 -10.247 15.857 21.066 1 224.97 ? O3B FAD 301 C 1 HETATM 10 C C2B FAD . . . G 2 -8.635 14.044 20.641 1 239.64 ? C2B FAD 301 C 1 HETATM 11 O O2B FAD . . . G 2 -7.918 15.143 20.064 1 241.84 ? O2B FAD 301 C 1 HETATM 12 C C1B FAD . . . G 2 -7.839 13.463 21.8 1 248.81 ? C1B FAD 301 C 1 HETATM 13 N N9A FAD . . . G 2 -7.485 12.052 21.507 1 263.05 ? N9A FAD 301 C 1 HETATM 14 C C8A FAD . . . G 2 -8.09 10.966 22.024 1 265.44 ? C8A FAD 301 C 1 HETATM 15 N N7A FAD . . . G 2 -7.528 9.822 21.554 1 267.61 ? N7A FAD 301 C 1 HETATM 16 C C5A FAD . . . G 2 -6.537 10.175 20.714 1 270.64 ? C5A FAD 301 C 1 HETATM 17 C C6A FAD . . . G 2 -5.543 9.463 19.877 1 271.39 ? C6A FAD 301 C 1 HETATM 18 N N6A FAD . . . G 2 -5.496 8.109 19.843 1 268.84 ? N6A FAD 301 C 1 HETATM 19 N N1A FAD . . . G 2 -4.685 10.21 19.148 1 273.48 ? N1A FAD 301 C 1 HETATM 20 C C2A FAD . . . G 2 -4.721 11.556 19.172 1 273.42 ? C2A FAD 301 C 1 HETATM 21 N N3A FAD . . . G 2 -5.595 12.266 19.908 1 272.92 ? N3A FAD 301 C 1 HETATM 22 C C4A FAD . . . G 2 -6.513 11.645 20.687 1 270.38 ? C4A FAD 301 C 1 HETATM 23 N N1 FAD . . . G 2 -14.498 21.472 28.369 1 114.05 ? N1 FAD 301 C 1 HETATM 24 C C2 FAD . . . G 2 -15.142 21.543 29.561 1 114.24 ? C2 FAD 301 C 1 HETATM 25 O O2 FAD . . . G 2 -16.229 20.94 29.692 1 111.47 ? O2 FAD 301 C 1 HETATM 26 N N3 FAD . . . G 2 -14.659 22.235 30.609 1 120.21 ? N3 FAD 301 C 1 HETATM 27 C C4 FAD . . . G 2 -13.503 22.907 30.549 1 128.9 ? C4 FAD 301 C 1 HETATM 28 O O4 FAD . . . G 2 -13.08 23.541 31.54 1 129.15 ? O4 FAD 301 C 1 HETATM 29 C C4X FAD . . . G 2 -12.735 22.881 29.281 1 136.19 ? C4X FAD 301 C 1 HETATM 30 N N5 FAD . . . G 2 -11.56 23.533 29.139 1 131.55 ? N5 FAD 301 C 1 HETATM 31 C C5X FAD . . . G 2 -10.883 23.49 27.968 1 124.62 ? C5X FAD 301 C 1 HETATM 32 C C6 FAD . . . G 2 -9.675 24.169 27.845 1 110.01 ? C6 FAD 301 C 1 HETATM 33 C C7 FAD . . . G 2 -8.973 24.13 26.646 1 103.62 ? C7 FAD 301 C 1 HETATM 34 C C7M FAD . . . G 2 -7.665 24.866 26.516 1 100.67 ? C7M FAD 301 C 1 HETATM 35 C C8 FAD . . . G 2 -9.511 23.364 25.491 1 109.55 ? C8 FAD 301 C 1 HETATM 36 C C8M FAD . . . G 2 -8.749 23.324 24.193 1 106.43 ? C8M FAD 301 C 1 HETATM 37 C C9 FAD . . . G 2 -10.718 22.684 25.609 1 128.66 ? C9 FAD 301 C 1 HETATM 38 C C9A FAD . . . G 2 -11.42 22.722 26.808 1 132.57 ? C9A FAD 301 C 1 HETATM 39 N N10 FAD . . . G 2 -12.644 22.036 26.936 1 125.95 ? N10 FAD 301 C 1 HETATM 40 C C10 FAD . . . G 2 -13.322 22.102 28.167 1 127.66 ? C10 FAD 301 C 1 HETATM 41 C C1' FAD . . . G 2 -13.197 21.274 25.815 1 119.17 ? C1' FAD 301 C 1 HETATM 42 C C2' FAD . . . G 2 -12.774 19.815 25.933 1 113.46 ? C2' FAD 301 C 1 HETATM 43 O O2' FAD . . . G 2 -11.345 19.735 25.982 1 107.26 ? O2' FAD 301 C 1 HETATM 44 C C3' FAD . . . G 2 -13.288 19 24.752 1 120.77 ? C3' FAD 301 C 1 HETATM 45 O O3' FAD . . . G 2 -14.705 18.83 24.871 1 131.43 ? O3' FAD 301 C 1 HETATM 46 C C4' FAD . . . G 2 -12.616 17.633 24.697 1 118.64 ? C4' FAD 301 C 1 HETATM 47 O O4' FAD . . . G 2 -13.213 16.849 23.658 1 108.27 ? O4' FAD 301 C 1 HETATM 48 C C5' FAD . . . G 2 -12.752 16.903 26.027 1 114.41 ? C5' FAD 301 C 1 HETATM 49 O O5' FAD . . . G 2 -11.743 15.9 26.123 1 114.4 ? O5' FAD 301 C 1 HETATM 50 P P FAD . . . G 2 -11.577 15.034 27.471 1 100.74 ? P FAD 301 C 1 HETATM 51 O O1P FAD . . . G 2 -10.339 15.513 28.191 1 83.45 -1 O1P FAD 301 C 1 HETATM 52 O O2P FAD . . . G 2 -12.906 15.015 28.187 1 103.07 ? O2P FAD 301 C 1 HETATM 53 O O3P FAD . . . G 2 -11.289 13.554 26.905 1 121.5 ? O3P FAD 301 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #