data_5H7J # _model_server_result.job_id 5m8vqCdWcymNLRoX1gBk-A _model_server_result.datetime_utc '2024-10-20 03:31:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h7j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 5H7J # _exptl.entry_id 5H7J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H7J _cell.length_a 84.216 _cell.length_b 116.131 _cell.length_c 189.166 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,C,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 616 A CYS 616 1_555 A SG CYS 732 A CYS 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 B SG CYS 616 B CYS 616 1_555 B SG CYS 732 B CYS 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'C11 H18 N5 O13 P3' _chem_comp.formula_weight 521.208 _chem_comp.id GCP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5H7J _atom_sites.fract_transf_matrix[1][1] 0.011874 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GCP B 1 801 1 GCP GCP . D 3 HOH A 1 801 196 HOH HOH . D 3 HOH A 2 802 130 HOH HOH . D 3 HOH A 3 803 80 HOH HOH . D 3 HOH A 4 804 122 HOH HOH . D 3 HOH A 5 805 21 HOH HOH . D 3 HOH A 6 806 155 HOH HOH . D 3 HOH A 7 807 37 HOH HOH . D 3 HOH A 8 808 163 HOH HOH . D 3 HOH A 9 809 59 HOH HOH . D 3 HOH A 10 810 137 HOH HOH . D 3 HOH A 11 811 50 HOH HOH . D 3 HOH A 12 812 46 HOH HOH . D 3 HOH A 13 813 193 HOH HOH . D 3 HOH A 14 814 73 HOH HOH . D 3 HOH A 15 815 166 HOH HOH . D 3 HOH A 16 816 51 HOH HOH . D 3 HOH A 17 817 181 HOH HOH . D 3 HOH A 18 818 4 HOH HOH . D 3 HOH A 19 819 183 HOH HOH . D 3 HOH A 20 820 65 HOH HOH . D 3 HOH A 21 821 15 HOH HOH . D 3 HOH A 22 822 55 HOH HOH . D 3 HOH A 23 823 22 HOH HOH . D 3 HOH A 24 824 58 HOH HOH . D 3 HOH A 25 825 12 HOH HOH . D 3 HOH A 26 826 177 HOH HOH . D 3 HOH A 27 827 20 HOH HOH . D 3 HOH A 28 828 184 HOH HOH . D 3 HOH A 29 829 140 HOH HOH . D 3 HOH A 30 830 94 HOH HOH . D 3 HOH A 31 831 129 HOH HOH . D 3 HOH A 32 832 44 HOH HOH . D 3 HOH A 33 833 82 HOH HOH . D 3 HOH A 34 834 185 HOH HOH . D 3 HOH A 35 835 110 HOH HOH . D 3 HOH A 36 836 85 HOH HOH . D 3 HOH A 37 837 16 HOH HOH . D 3 HOH A 38 838 186 HOH HOH . D 3 HOH A 39 839 78 HOH HOH . D 3 HOH A 40 840 139 HOH HOH . D 3 HOH A 41 841 102 HOH HOH . D 3 HOH A 42 842 72 HOH HOH . D 3 HOH A 43 843 29 HOH HOH . D 3 HOH A 44 844 149 HOH HOH . D 3 HOH A 45 845 173 HOH HOH . D 3 HOH A 46 846 7 HOH HOH . D 3 HOH A 47 847 6 HOH HOH . D 3 HOH A 48 848 189 HOH HOH . D 3 HOH A 49 849 91 HOH HOH . D 3 HOH A 50 850 66 HOH HOH . D 3 HOH A 51 851 25 HOH HOH . D 3 HOH A 52 852 179 HOH HOH . D 3 HOH A 53 853 64 HOH HOH . D 3 HOH A 54 854 26 HOH HOH . D 3 HOH A 55 855 13 HOH HOH . D 3 HOH A 56 856 187 HOH HOH . D 3 HOH A 57 857 197 HOH HOH . D 3 HOH A 58 858 42 HOH HOH . D 3 HOH A 59 859 99 HOH HOH . D 3 HOH A 60 860 45 HOH HOH . D 3 HOH A 61 861 174 HOH HOH . D 3 HOH A 62 862 106 HOH HOH . D 3 HOH A 63 863 176 HOH HOH . D 3 HOH A 64 864 165 HOH HOH . D 3 HOH A 65 865 33 HOH HOH . D 3 HOH A 66 866 180 HOH HOH . D 3 HOH A 67 867 47 HOH HOH . D 3 HOH A 68 868 175 HOH HOH . D 3 HOH A 69 869 34 HOH HOH . D 3 HOH A 70 870 18 HOH HOH . D 3 HOH A 71 871 169 HOH HOH . D 3 HOH A 72 872 70 HOH HOH . D 3 HOH A 73 873 88 HOH HOH . D 3 HOH A 74 874 92 HOH HOH . D 3 HOH A 75 875 198 HOH HOH . D 3 HOH A 76 876 170 HOH HOH . D 3 HOH A 77 877 148 HOH HOH . D 3 HOH A 78 878 115 HOH HOH . D 3 HOH A 79 879 98 HOH HOH . D 3 HOH A 80 880 152 HOH HOH . D 3 HOH A 81 881 154 HOH HOH . D 3 HOH A 82 882 203 HOH HOH . D 3 HOH A 83 883 14 HOH HOH . D 3 HOH A 84 884 167 HOH HOH . D 3 HOH A 85 885 134 HOH HOH . D 3 HOH A 86 886 79 HOH HOH . D 3 HOH A 87 887 87 HOH HOH . D 3 HOH A 88 888 171 HOH HOH . D 3 HOH A 89 889 144 HOH HOH . D 3 HOH A 90 890 200 HOH HOH . D 3 HOH A 91 891 141 HOH HOH . D 3 HOH A 92 892 151 HOH HOH . E 3 HOH B 1 901 178 HOH HOH . E 3 HOH B 2 902 105 HOH HOH . E 3 HOH B 3 903 27 HOH HOH . E 3 HOH B 4 904 52 HOH HOH . E 3 HOH B 5 905 195 HOH HOH . E 3 HOH B 6 906 103 HOH HOH . E 3 HOH B 7 907 161 HOH HOH . E 3 HOH B 8 908 69 HOH HOH . E 3 HOH B 9 909 96 HOH HOH . E 3 HOH B 10 910 76 HOH HOH . E 3 HOH B 11 911 81 HOH HOH . E 3 HOH B 12 912 68 HOH HOH . E 3 HOH B 13 913 28 HOH HOH . E 3 HOH B 14 914 153 HOH HOH . E 3 HOH B 15 915 1 HOH HOH . E 3 HOH B 16 916 191 HOH HOH . E 3 HOH B 17 917 48 HOH HOH . E 3 HOH B 18 918 120 HOH HOH . E 3 HOH B 19 919 62 HOH HOH . E 3 HOH B 20 920 60 HOH HOH . E 3 HOH B 21 921 63 HOH HOH . E 3 HOH B 22 922 17 HOH HOH . E 3 HOH B 23 923 125 HOH HOH . E 3 HOH B 24 924 67 HOH HOH . E 3 HOH B 25 925 118 HOH HOH . E 3 HOH B 26 926 111 HOH HOH . E 3 HOH B 27 927 127 HOH HOH . E 3 HOH B 28 928 182 HOH HOH . E 3 HOH B 29 929 2 HOH HOH . E 3 HOH B 30 930 113 HOH HOH . E 3 HOH B 31 931 201 HOH HOH . E 3 HOH B 32 932 61 HOH HOH . E 3 HOH B 33 933 90 HOH HOH . E 3 HOH B 34 934 104 HOH HOH . E 3 HOH B 35 935 147 HOH HOH . E 3 HOH B 36 936 23 HOH HOH . E 3 HOH B 37 937 35 HOH HOH . E 3 HOH B 38 938 77 HOH HOH . E 3 HOH B 39 939 128 HOH HOH . E 3 HOH B 40 940 3 HOH HOH . E 3 HOH B 41 941 142 HOH HOH . E 3 HOH B 42 942 194 HOH HOH . E 3 HOH B 43 943 145 HOH HOH . E 3 HOH B 44 944 43 HOH HOH . E 3 HOH B 45 945 19 HOH HOH . E 3 HOH B 46 946 159 HOH HOH . E 3 HOH B 47 947 31 HOH HOH . E 3 HOH B 48 948 97 HOH HOH . E 3 HOH B 49 949 9 HOH HOH . E 3 HOH B 50 950 138 HOH HOH . E 3 HOH B 51 951 108 HOH HOH . E 3 HOH B 52 952 121 HOH HOH . E 3 HOH B 53 953 53 HOH HOH . E 3 HOH B 54 954 119 HOH HOH . E 3 HOH B 55 955 136 HOH HOH . E 3 HOH B 56 956 133 HOH HOH . E 3 HOH B 57 957 56 HOH HOH . E 3 HOH B 58 958 95 HOH HOH . E 3 HOH B 59 959 10 HOH HOH . E 3 HOH B 60 960 30 HOH HOH . E 3 HOH B 61 961 8 HOH HOH . E 3 HOH B 62 962 100 HOH HOH . E 3 HOH B 63 963 49 HOH HOH . E 3 HOH B 64 964 86 HOH HOH . E 3 HOH B 65 965 38 HOH HOH . E 3 HOH B 66 966 114 HOH HOH . E 3 HOH B 67 967 162 HOH HOH . E 3 HOH B 68 968 89 HOH HOH . E 3 HOH B 69 969 131 HOH HOH . E 3 HOH B 70 970 11 HOH HOH . E 3 HOH B 71 971 57 HOH HOH . E 3 HOH B 72 972 75 HOH HOH . E 3 HOH B 73 973 204 HOH HOH . E 3 HOH B 74 974 116 HOH HOH . E 3 HOH B 75 975 199 HOH HOH . E 3 HOH B 76 976 202 HOH HOH . E 3 HOH B 77 977 24 HOH HOH . E 3 HOH B 78 978 135 HOH HOH . E 3 HOH B 79 979 54 HOH HOH . E 3 HOH B 80 980 150 HOH HOH . E 3 HOH B 81 981 117 HOH HOH . E 3 HOH B 82 982 192 HOH HOH . E 3 HOH B 83 983 83 HOH HOH . E 3 HOH B 84 984 107 HOH HOH . E 3 HOH B 85 985 156 HOH HOH . E 3 HOH B 86 986 160 HOH HOH . E 3 HOH B 87 987 109 HOH HOH . E 3 HOH B 88 988 41 HOH HOH . E 3 HOH B 89 989 172 HOH HOH . E 3 HOH B 90 990 40 HOH HOH . E 3 HOH B 91 991 112 HOH HOH . E 3 HOH B 92 992 101 HOH HOH . E 3 HOH B 93 993 84 HOH HOH . E 3 HOH B 94 994 32 HOH HOH . E 3 HOH B 95 995 36 HOH HOH . E 3 HOH B 96 996 158 HOH HOH . E 3 HOH B 97 997 93 HOH HOH . E 3 HOH B 98 998 124 HOH HOH . E 3 HOH B 99 999 39 HOH HOH . E 3 HOH B 100 1000 164 HOH HOH . E 3 HOH B 101 1001 5 HOH HOH . E 3 HOH B 102 1002 157 HOH HOH . E 3 HOH B 103 1003 74 HOH HOH . E 3 HOH B 104 1004 126 HOH HOH . E 3 HOH B 105 1005 168 HOH HOH . E 3 HOH B 106 1006 143 HOH HOH . E 3 HOH B 107 1007 188 HOH HOH . E 3 HOH B 108 1008 71 HOH HOH . E 3 HOH B 109 1009 205 HOH HOH . E 3 HOH B 110 1010 132 HOH HOH . E 3 HOH B 111 1011 146 HOH HOH . E 3 HOH B 112 1012 190 HOH HOH . E 3 HOH B 113 1013 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GCP . . . C 2 -20.403 -12.772 32.878 0.69 88.56 ? PG GCP 801 B 1 HETATM 2 O O1G GCP . . . C 2 -21.357 -11.911 31.907 0.69 87.11 ? O1G GCP 801 B 1 HETATM 3 O O2G GCP . . . C 2 -19.029 -12.206 32.911 0.69 84.13 ? O2G GCP 801 B 1 HETATM 4 O O3G GCP . . . C 2 -21.024 -12.732 34.366 0.69 87.25 ? O3G GCP 801 B 1 HETATM 5 C C3B GCP . . . C 2 -20.334 -14.489 32.298 0.69 83.62 ? C3B GCP 801 B 1 HETATM 6 P PB GCP . . . C 2 -19.922 -15.458 33.764 0.69 81.39 ? PB GCP 801 B 1 HETATM 7 O O1B GCP . . . C 2 -18.47 -15.703 33.835 0.69 78.5 ? O1B GCP 801 B 1 HETATM 8 O O2B GCP . . . C 2 -20.374 -14.63 35.073 0.69 80.09 ? O2B GCP 801 B 1 HETATM 9 O O3A GCP . . . C 2 -20.692 -16.855 33.793 0.69 77.63 ? O3A GCP 801 B 1 HETATM 10 P PA GCP . . . C 2 -21.101 -17.32 35.276 0.69 78.64 ? PA GCP 801 B 1 HETATM 11 O O1A GCP . . . C 2 -22.02 -16.271 35.87 0.69 75.23 ? O1A GCP 801 B 1 HETATM 12 O O2A GCP . . . C 2 -19.809 -17.672 35.978 0.69 69.65 ? O2A GCP 801 B 1 HETATM 13 O O5' GCP . . . C 2 -21.986 -18.632 34.996 0.69 72.31 ? O5' GCP 801 B 1 HETATM 14 C C5' GCP . . . C 2 -23.355 -18.444 34.648 0.69 74.79 ? C5' GCP 801 B 1 HETATM 15 C C4' GCP . . . C 2 -24.142 -19.628 35.175 0.69 73.97 ? C4' GCP 801 B 1 HETATM 16 O O4' GCP . . . C 2 -23.308 -20.785 35.107 0.69 71.08 ? O4' GCP 801 B 1 HETATM 17 C C3' GCP . . . C 2 -24.519 -19.42 36.641 0.69 72.83 ? C3' GCP 801 B 1 HETATM 18 O O3' GCP . . . C 2 -25.945 -19.467 36.781 0.69 66.98 ? O3' GCP 801 B 1 HETATM 19 C C2' GCP . . . C 2 -23.885 -20.578 37.39 0.69 69.42 ? C2' GCP 801 B 1 HETATM 20 O O2' GCP . . . C 2 -24.804 -21.187 38.294 0.69 68.68 ? O2' GCP 801 B 1 HETATM 21 C C1' GCP . . . C 2 -23.558 -21.558 36.282 0.69 68.08 ? C1' GCP 801 B 1 HETATM 22 N N9 GCP . . . C 2 -22.454 -22.476 36.65 0.69 66.88 ? N9 GCP 801 B 1 HETATM 23 C C8 GCP . . . C 2 -21.151 -22.234 36.939 0.69 64.28 ? C8 GCP 801 B 1 HETATM 24 N N7 GCP . . . C 2 -20.498 -23.395 37.238 0.69 54.92 ? N7 GCP 801 B 1 HETATM 25 C C5 GCP . . . C 2 -21.41 -24.393 37.13 0.69 57.88 ? C5 GCP 801 B 1 HETATM 26 C C6 GCP . . . C 2 -21.452 -25.869 37.299 0.69 56.29 ? C6 GCP 801 B 1 HETATM 27 O O6 GCP . . . C 2 -20.425 -26.51 37.622 0.69 51.87 ? O6 GCP 801 B 1 HETATM 28 N N1 GCP . . . C 2 -22.627 -26.496 37.093 0.69 57.32 ? N1 GCP 801 B 1 HETATM 29 C C2 GCP . . . C 2 -23.758 -25.852 36.748 0.69 57.98 ? C2 GCP 801 B 1 HETATM 30 N N2 GCP . . . C 2 -24.906 -26.547 36.552 0.69 61.24 ? N2 GCP 801 B 1 HETATM 31 N N3 GCP . . . C 2 -23.795 -24.515 36.58 0.69 62.66 ? N3 GCP 801 B 1 HETATM 32 C C4 GCP . . . C 2 -22.684 -23.77 36.757 0.69 62.21 ? C4 GCP 801 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #