data_5H7L # _model_server_result.job_id hkKxs_yjS41Yj_bbPIPOkw _model_server_result.datetime_utc '2025-02-18 23:37:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h7l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 5H7L # _exptl.entry_id 5H7L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H7L _cell.length_a 79.774 _cell.length_b 121.902 _cell.length_c 199.265 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H7L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E 1 1 B,C,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 616 A CYS 616 1_555 A SG CYS 732 A CYS 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 B SG CYS 616 B CYS 616 1_555 B SG CYS 732 B CYS 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'C11 H18 N5 O13 P3' _chem_comp.formula_weight 521.208 _chem_comp.id GCP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GCP doub 83 n n PG O2G GCP sing 84 n n PG O3G GCP sing 85 n n PG C3B GCP sing 86 n n O2G HOG2 GCP sing 87 n n O3G HOG3 GCP sing 88 n n C3B PB GCP sing 89 n n C3B H3B1 GCP sing 90 n n C3B H3B2 GCP sing 91 n n PB O1B GCP doub 92 n n PB O2B GCP sing 93 n n PB O3A GCP sing 94 n n O2B HOB2 GCP sing 95 n n O3A PA GCP sing 96 n n PA O1A GCP doub 97 n n PA O2A GCP sing 98 n n PA O5' GCP sing 99 n n O2A HOA2 GCP sing 100 n n O5' C5' GCP sing 101 n n C5' C4' GCP sing 102 n n C5' "H5'2" GCP sing 103 n n C5' "H5'1" GCP sing 104 n n C4' O4' GCP sing 105 n n C4' C3' GCP sing 106 n n C4' H4' GCP sing 107 n n O4' C1' GCP sing 108 n n C3' O3' GCP sing 109 n n C3' C2' GCP sing 110 n n C3' H3' GCP sing 111 n n O3' HO3' GCP sing 112 n n C2' O2' GCP sing 113 n n C2' C1' GCP sing 114 n n C2' H2' GCP sing 115 n n O2' HO2' GCP sing 116 n n C1' N9 GCP sing 117 n n C1' H1' GCP sing 118 n n N9 C8 GCP sing 119 n y N9 C4 GCP sing 120 n y C8 N7 GCP doub 121 n y C8 H8 GCP sing 122 n n N7 C5 GCP sing 123 n y C5 C6 GCP sing 124 n y C5 C4 GCP doub 125 n y C6 O6 GCP doub 126 n n C6 N1 GCP sing 127 n y N1 C2 GCP sing 128 n y N1 HN1 GCP sing 129 n n C2 N2 GCP sing 130 n n C2 N3 GCP doub 131 n y N2 HN21 GCP sing 132 n n N2 HN22 GCP sing 133 n n N3 C4 GCP sing 134 n y # _atom_sites.entry_id 5H7L _atom_sites.fract_transf_matrix[1][1] 0.012535 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005018 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GCP A 1 801 1 GCP GCP . F 3 GCP B 1 801 1 GCP GCP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GCP . . . E 3 -6.465 -22.779 23.237 1 135.29 ? PG GCP 801 A 1 HETATM 2 O O1G GCP . . . E 3 -7.679 -21.817 22.801 1 118.46 ? O1G GCP 801 A 1 HETATM 3 O O2G GCP . . . E 3 -5.222 -21.985 23.385 1 123.29 ? O2G GCP 801 A 1 HETATM 4 O O3G GCP . . . E 3 -6.873 -23.397 24.674 1 127.39 ? O3G GCP 801 A 1 HETATM 5 C C3B GCP . . . E 3 -6.223 -24.033 21.932 1 115.22 ? C3B GCP 801 A 1 HETATM 6 P PB GCP . . . E 3 -5.312 -25.516 22.458 1 115.03 ? PB GCP 801 A 1 HETATM 7 O O1B GCP . . . E 3 -3.983 -25.578 21.828 1 108.05 ? O1B GCP 801 A 1 HETATM 8 O O2B GCP . . . E 3 -5.231 -25.428 24.059 1 113.19 ? O2B GCP 801 A 1 HETATM 9 O O3A GCP . . . E 3 -6.11 -26.852 22.092 1 106.46 ? O3A GCP 801 A 1 HETATM 10 P PA GCP . . . E 3 -6.681 -27.771 23.288 1 113.51 ? PA GCP 801 A 1 HETATM 11 O O1A GCP . . . E 3 -5.693 -28.874 23.531 1 108.25 ? O1A GCP 801 A 1 HETATM 12 O O2A GCP . . . E 3 -7.111 -26.922 24.474 1 108.72 ? O2A GCP 801 A 1 HETATM 13 O O5' GCP . . . E 3 -7.967 -28.403 22.533 1 105.68 ? O5' GCP 801 A 1 HETATM 14 C C5' GCP . . . E 3 -9.24 -27.775 22.592 1 103.39 ? C5' GCP 801 A 1 HETATM 15 C C4' GCP . . . E 3 -10.295 -28.841 22.803 1 98.95 ? C4' GCP 801 A 1 HETATM 16 O O4' GCP . . . E 3 -10.043 -29.898 21.889 1 104.39 ? O4' GCP 801 A 1 HETATM 17 C C3' GCP . . . E 3 -10.191 -29.411 24.21 1 98.31 ? C3' GCP 801 A 1 HETATM 18 O O3' GCP . . . E 3 -11.437 -29.254 24.881 1 101.3 ? O3' GCP 801 A 1 HETATM 19 C C2' GCP . . . E 3 -9.975 -30.888 24.066 1 106.92 ? C2' GCP 801 A 1 HETATM 20 O O2' GCP . . . E 3 -10.963 -31.576 24.836 1 114.88 ? O2' GCP 801 A 1 HETATM 21 C C1' GCP . . . E 3 -10.18 -31.145 22.581 1 109.29 ? C1' GCP 801 A 1 HETATM 22 N N9 GCP . . . E 3 -9.194 -32.172 22.163 1 107 ? N9 GCP 801 A 1 HETATM 23 C C8 GCP . . . E 3 -7.85 -32.096 22.231 1 102.36 ? C8 GCP 801 A 1 HETATM 24 N N7 GCP . . . E 3 -7.274 -33.238 21.774 1 101.79 ? N7 GCP 801 A 1 HETATM 25 C C5 GCP . . . E 3 -8.275 -34.086 21.423 1 106.12 ? C5 GCP 801 A 1 HETATM 26 C C6 GCP . . . E 3 -8.401 -35.468 20.871 1 94.6 ? C6 GCP 801 A 1 HETATM 27 O O6 GCP . . . E 3 -7.401 -36.174 20.597 1 82.98 ? O6 GCP 801 A 1 HETATM 28 N N1 GCP . . . E 3 -9.644 -35.932 20.653 1 94.74 ? N1 GCP 801 A 1 HETATM 29 C C2 GCP . . . E 3 -10.758 -35.218 20.921 1 98.88 ? C2 GCP 801 A 1 HETATM 30 N N2 GCP . . . E 3 -11.979 -35.745 20.679 1 104.61 ? N2 GCP 801 A 1 HETATM 31 N N3 GCP . . . E 3 -10.709 -33.968 21.426 1 104.37 ? N3 GCP 801 A 1 HETATM 32 C C4 GCP . . . E 3 -9.529 -33.367 21.69 1 104.84 ? C4 GCP 801 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 513 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 32 #