data_5H7L
#
_model_server_result.job_id            HaT7L637v7Cb1D8ZZDDwzA 
_model_server_result.datetime_utc      '2024-11-12 20:29:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5h7l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":801}' 
#
_entry.id    5H7L 
#
_exptl.entry_id    5H7L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              521.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5H7L 
_cell.length_a            79.774 
_cell.length_b            121.902 
_cell.length_c            199.265 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5H7L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E 1 1 
B,C,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 616 A CYS 616 1_555 A SG CYS 732 A CYS 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf2 B SG CYS 616 B CYS 616 1_555 B SG CYS 732 B CYS 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
#
_chem_comp.formula           'C11 H18 N5 O13 P3' 
_chem_comp.formula_weight    521.208 
_chem_comp.id                GCP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GCP doub 83 n n 
PG O2G GCP sing 84 n n 
PG O3G GCP sing 85 n n 
PG C3B GCP sing 86 n n 
O2G HOG2 GCP sing 87 n n 
O3G HOG3 GCP sing 88 n n 
C3B PB GCP sing 89 n n 
C3B H3B1 GCP sing 90 n n 
C3B H3B2 GCP sing 91 n n 
PB O1B GCP doub 92 n n 
PB O2B GCP sing 93 n n 
PB O3A GCP sing 94 n n 
O2B HOB2 GCP sing 95 n n 
O3A PA GCP sing 96 n n 
PA O1A GCP doub 97 n n 
PA O2A GCP sing 98 n n 
PA O5' GCP sing 99 n n 
O2A HOA2 GCP sing 100 n n 
O5' C5' GCP sing 101 n n 
C5' C4' GCP sing 102 n n 
C5' "H5'2" GCP sing 103 n n 
C5' "H5'1" GCP sing 104 n n 
C4' O4' GCP sing 105 n n 
C4' C3' GCP sing 106 n n 
C4' H4' GCP sing 107 n n 
O4' C1' GCP sing 108 n n 
C3' O3' GCP sing 109 n n 
C3' C2' GCP sing 110 n n 
C3' H3' GCP sing 111 n n 
O3' HO3' GCP sing 112 n n 
C2' O2' GCP sing 113 n n 
C2' C1' GCP sing 114 n n 
C2' H2' GCP sing 115 n n 
O2' HO2' GCP sing 116 n n 
C1' N9 GCP sing 117 n n 
C1' H1' GCP sing 118 n n 
N9 C8 GCP sing 119 n y 
N9 C4 GCP sing 120 n y 
C8 N7 GCP doub 121 n y 
C8 H8 GCP sing 122 n n 
N7 C5 GCP sing 123 n y 
C5 C6 GCP sing 124 n y 
C5 C4 GCP doub 125 n y 
C6 O6 GCP doub 126 n n 
C6 N1 GCP sing 127 n y 
N1 C2 GCP sing 128 n y 
N1 HN1 GCP sing 129 n n 
C2 N2 GCP sing 130 n n 
C2 N3 GCP doub 131 n y 
N2 HN21 GCP sing 132 n n 
N2 HN22 GCP sing 133 n n 
N3 C4 GCP sing 134 n y 
#
_atom_sites.entry_id                     5H7L 
_atom_sites.fract_transf_matrix[1][1]    0.012535 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008203 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005018 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GCP A 1 801 1 GCP GCP . 
F 3 GCP B 1 801 1 GCP GCP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GCP . . . F 3 21.887 -10.092 -36.826 1 137.11 ? PG GCP 801 B 1 
HETATM 2 O O1G GCP . . . F 3 21.915 -9.981 -38.435 1 119.73 ? O1G GCP 801 B 1 
HETATM 3 O O2G GCP . . . F 3 23.135 -9.276 -36.209 1 134.86 ? O2G GCP 801 B 1 
HETATM 4 O O3G GCP . . . F 3 20.596 -9.559 -36.3 1 135.23 ? O3G GCP 801 B 1 
HETATM 5 C C3B GCP . . . F 3 22.116 -11.812 -36.332 1 121.83 ? C3B GCP 801 B 1 
HETATM 6 P PB GCP . . . F 3 20.632 -12.827 -36.534 1 114.32 ? PB GCP 801 B 1 
HETATM 7 O O1B GCP . . . F 3 19.583 -12.156 -37.551 1 108.02 ? O1B GCP 801 B 1 
HETATM 8 O O2B GCP . . . F 3 20.026 -13.009 -35.202 1 118.92 ? O2B GCP 801 B 1 
HETATM 9 O O3A GCP . . . F 3 21.131 -14.266 -37.033 1 114.46 ? O3A GCP 801 B 1 
HETATM 10 P PA GCP . . . F 3 21.434 -14.627 -38.571 1 108.23 ? PA GCP 801 B 1 
HETATM 11 O O1A GCP . . . F 3 22.089 -13.48 -39.333 1 95.23 ? O1A GCP 801 B 1 
HETATM 12 O O2A GCP . . . F 3 20.299 -15.398 -39.187 1 103.91 ? O2A GCP 801 B 1 
HETATM 13 O O5' GCP . . . F 3 22.586 -15.691 -38.335 1 108.87 ? O5' GCP 801 B 1 
HETATM 14 C C5' GCP . . . F 3 23.499 -15.651 -39.411 1 115.58 ? C5' GCP 801 B 1 
HETATM 15 C C4' GCP . . . F 3 24.634 -16.581 -39.139 1 95.15 ? C4' GCP 801 B 1 
HETATM 16 O O4' GCP . . . F 3 24.038 -17.702 -38.523 1 100.28 ? O4' GCP 801 B 1 
HETATM 17 C C3' GCP . . . F 3 25.196 -16.931 -40.498 1 96.35 ? C3' GCP 801 B 1 
HETATM 18 O O3' GCP . . . F 3 26.563 -16.521 -40.545 1 108.62 ? O3' GCP 801 B 1 
HETATM 19 C C2' GCP . . . F 3 25.074 -18.427 -40.592 1 114.92 ? C2' GCP 801 B 1 
HETATM 20 O O2' GCP . . . F 3 26.383 -19.019 -40.691 1 112.98 ? O2' GCP 801 B 1 
HETATM 21 C C1' GCP . . . F 3 24.351 -18.845 -39.309 1 113.47 ? C1' GCP 801 B 1 
HETATM 22 N N9 GCP . . . F 3 23.108 -19.569 -39.64 1 105.25 ? N9 GCP 801 B 1 
HETATM 23 C C8 GCP . . . F 3 21.857 -19.099 -39.766 1 104.16 ? C8 GCP 801 B 1 
HETATM 24 N N7 GCP . . . F 3 21.006 -20.113 -40.079 1 104.89 ? N7 GCP 801 B 1 
HETATM 25 C C5 GCP . . . F 3 21.724 -21.249 -40.158 1 103.98 ? C5 GCP 801 B 1 
HETATM 26 C C6 GCP . . . F 3 21.488 -22.681 -40.438 1 97.24 ? C6 GCP 801 B 1 
HETATM 27 O O6 GCP . . . F 3 20.368 -23.133 -40.7 1 97.42 ? O6 GCP 801 B 1 
HETATM 28 N N1 GCP . . . F 3 22.535 -23.508 -40.406 1 104.63 ? N1 GCP 801 B 1 
HETATM 29 C C2 GCP . . . F 3 23.798 -23.083 -40.129 1 107.85 ? C2 GCP 801 B 1 
HETATM 30 N N2 GCP . . . F 3 24.827 -23.968 -40.112 1 106.14 ? N2 GCP 801 B 1 
HETATM 31 N N3 GCP . . . F 3 24.093 -21.793 -39.859 1 102.63 ? N3 GCP 801 B 1 
HETATM 32 C C4 GCP . . . F 3 23.111 -20.869 -39.873 1 103.9 ? C4 GCP 801 B 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#