data_5H84 # _model_server_result.job_id YajcOmhloH56SZ1OnuFctQ _model_server_result.datetime_utc '2024-12-01 08:05:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5H84 # _exptl.entry_id 5H84 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 823.597 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'propionyl Coenzyme A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5H84 _cell.length_a 38.087 _cell.length_b 38.087 _cell.length_c 187.057 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H40 N7 O17 P3 S' _chem_comp.formula_weight 823.597 _chem_comp.id 1VU _chem_comp.mon_nstd_flag . _chem_comp.name 'propionyl Coenzyme A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 P 1VU doub 1 n n C C1 1VU sing 2 n n O9 P1 1VU doub 3 n n C13 O4 1VU sing 4 n n C13 C10 1VU sing 5 n n C12 C10 1VU sing 6 n n P O4 1VU sing 7 n n P O6 1VU sing 8 n n P O7 1VU sing 9 n n C11 C10 1VU sing 10 n n C1 C2 1VU sing 11 n n C10 C9 1VU sing 12 n n O7 P1 1VU sing 13 n n P1 O8 1VU sing 14 n n P1 O10 1VU sing 15 n n C2 S 1VU sing 16 n n C2 O 1VU doub 17 n n S C3 1VU sing 18 n n C9 O3 1VU sing 19 n n C9 C8 1VU sing 20 n n O10 C14 1VU sing 21 n n O2 C8 1VU doub 22 n n C8 N1 1VU sing 23 n n N C4 1VU sing 24 n n N C5 1VU sing 25 n n C14 C15 1VU sing 26 n n C6 C5 1VU sing 27 n n C6 C7 1VU sing 28 n n N1 C7 1VU sing 29 n n C4 C3 1VU sing 30 n n C5 O1 1VU doub 31 n n C23 C22 1VU sing 32 n n C23 C15 1VU sing 33 n n C23 O13 1VU sing 34 n n C17 N3 1VU doub 35 n y C17 N2 1VU sing 36 n y C22 O12 1VU sing 37 n n C22 C16 1VU sing 38 n n C15 O11 1VU sing 39 n n N3 C18 1VU sing 40 n y O14 P2 1VU doub 41 n n O15 P2 1VU sing 42 n n O11 C16 1VU sing 43 n n O13 P2 1VU sing 44 n n N2 C16 1VU sing 45 n n N2 C21 1VU sing 46 n y P2 O16 1VU sing 47 n n C18 C21 1VU doub 48 n y C18 C19 1VU sing 49 n y C21 N6 1VU sing 50 n y N4 C19 1VU sing 51 n n C19 N5 1VU doub 52 n y N6 C20 1VU doub 53 n y N5 C20 1VU sing 54 n y O15 H1 1VU sing 55 n n O16 H2 1VU sing 56 n n C23 H3 1VU sing 57 n n C22 H4 1VU sing 58 n n O12 H5 1VU sing 59 n n C16 H6 1VU sing 60 n n C20 H7 1VU sing 61 n n N4 H8 1VU sing 62 n n N4 H9 1VU sing 63 n n C17 H10 1VU sing 64 n n C15 H11 1VU sing 65 n n C14 H12 1VU sing 66 n n C14 H13 1VU sing 67 n n O8 H14 1VU sing 68 n n O6 H15 1VU sing 69 n n C13 H16 1VU sing 70 n n C13 H17 1VU sing 71 n n C11 H18 1VU sing 72 n n C11 H19 1VU sing 73 n n C11 H20 1VU sing 74 n n C12 H21 1VU sing 75 n n C12 H22 1VU sing 76 n n C12 H23 1VU sing 77 n n C9 H24 1VU sing 78 n n O3 H25 1VU sing 79 n n N1 H26 1VU sing 80 n n C7 H27 1VU sing 81 n n C7 H28 1VU sing 82 n n C6 H29 1VU sing 83 n n C6 H30 1VU sing 84 n n N H31 1VU sing 85 n n C4 H32 1VU sing 86 n n C4 H33 1VU sing 87 n n C3 H34 1VU sing 88 n n C3 H35 1VU sing 89 n n C1 H36 1VU sing 90 n n C1 H37 1VU sing 91 n n C H38 1VU sing 92 n n C H39 1VU sing 93 n n C H40 1VU sing 94 n n # _atom_sites.entry_id 5H84 _atom_sites.fract_transf_matrix[1][1] 0.026256 _atom_sites.fract_transf_matrix[1][2] 0.015159 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1VU A 1 201 1 1VU 1VU . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 3 EDO A 1 204 3 EDO EDO . F 4 IPA A 1 205 1 IPA IPA . G 5 HOH A 1 301 1 HOH HOH . G 5 HOH A 2 302 73 HOH HOH . G 5 HOH A 3 303 57 HOH HOH . G 5 HOH A 4 304 96 HOH HOH . G 5 HOH A 5 305 10 HOH HOH . G 5 HOH A 6 306 98 HOH HOH . G 5 HOH A 7 307 45 HOH HOH . G 5 HOH A 8 308 90 HOH HOH . G 5 HOH A 9 309 39 HOH HOH . G 5 HOH A 10 310 21 HOH HOH . G 5 HOH A 11 311 7 HOH HOH . G 5 HOH A 12 312 16 HOH HOH . G 5 HOH A 13 313 37 HOH HOH . G 5 HOH A 14 314 28 HOH HOH . G 5 HOH A 15 315 24 HOH HOH . G 5 HOH A 16 316 33 HOH HOH . G 5 HOH A 17 317 32 HOH HOH . G 5 HOH A 18 318 3 HOH HOH . G 5 HOH A 19 319 26 HOH HOH . G 5 HOH A 20 320 9 HOH HOH . G 5 HOH A 21 321 20 HOH HOH . G 5 HOH A 22 322 8 HOH HOH . G 5 HOH A 23 323 47 HOH HOH . G 5 HOH A 24 324 43 HOH HOH . G 5 HOH A 25 325 53 HOH HOH . G 5 HOH A 26 326 30 HOH HOH . G 5 HOH A 27 327 79 HOH HOH . G 5 HOH A 28 328 88 HOH HOH . G 5 HOH A 29 329 44 HOH HOH . G 5 HOH A 30 330 67 HOH HOH . G 5 HOH A 31 331 55 HOH HOH . G 5 HOH A 32 332 63 HOH HOH . G 5 HOH A 33 333 27 HOH HOH . G 5 HOH A 34 334 64 HOH HOH . G 5 HOH A 35 335 52 HOH HOH . G 5 HOH A 36 336 15 HOH HOH . G 5 HOH A 37 337 77 HOH HOH . G 5 HOH A 38 338 36 HOH HOH . G 5 HOH A 39 339 56 HOH HOH . G 5 HOH A 40 340 23 HOH HOH . G 5 HOH A 41 341 59 HOH HOH . G 5 HOH A 42 342 22 HOH HOH . G 5 HOH A 43 343 17 HOH HOH . G 5 HOH A 44 344 80 HOH HOH . G 5 HOH A 45 345 12 HOH HOH . G 5 HOH A 46 346 61 HOH HOH . G 5 HOH A 47 347 81 HOH HOH . G 5 HOH A 48 348 51 HOH HOH . G 5 HOH A 49 349 14 HOH HOH . G 5 HOH A 50 350 65 HOH HOH . G 5 HOH A 51 351 29 HOH HOH . G 5 HOH A 52 352 11 HOH HOH . G 5 HOH A 53 353 4 HOH HOH . G 5 HOH A 54 354 100 HOH HOH . G 5 HOH A 55 355 19 HOH HOH . G 5 HOH A 56 356 92 HOH HOH . G 5 HOH A 57 357 69 HOH HOH . G 5 HOH A 58 358 70 HOH HOH . G 5 HOH A 59 359 42 HOH HOH . G 5 HOH A 60 360 48 HOH HOH . G 5 HOH A 61 361 60 HOH HOH . G 5 HOH A 62 362 18 HOH HOH . G 5 HOH A 63 363 102 HOH HOH . G 5 HOH A 64 364 6 HOH HOH . G 5 HOH A 65 365 103 HOH HOH . G 5 HOH A 66 366 94 HOH HOH . G 5 HOH A 67 367 72 HOH HOH . G 5 HOH A 68 368 41 HOH HOH . G 5 HOH A 69 369 78 HOH HOH . G 5 HOH A 70 370 50 HOH HOH . G 5 HOH A 71 371 71 HOH HOH . G 5 HOH A 72 372 99 HOH HOH . G 5 HOH A 73 373 35 HOH HOH . G 5 HOH A 74 374 89 HOH HOH . G 5 HOH A 75 375 101 HOH HOH . G 5 HOH A 76 376 5 HOH HOH . G 5 HOH A 77 377 105 HOH HOH . G 5 HOH A 78 378 87 HOH HOH . G 5 HOH A 79 379 68 HOH HOH . G 5 HOH A 80 380 54 HOH HOH . G 5 HOH A 81 381 49 HOH HOH . G 5 HOH A 82 382 58 HOH HOH . G 5 HOH A 83 383 93 HOH HOH . G 5 HOH A 84 384 31 HOH HOH . G 5 HOH A 85 385 85 HOH HOH . G 5 HOH A 86 386 66 HOH HOH . G 5 HOH A 87 387 25 HOH HOH . G 5 HOH A 88 388 91 HOH HOH . G 5 HOH A 89 389 82 HOH HOH . G 5 HOH A 90 390 95 HOH HOH . G 5 HOH A 91 391 2 HOH HOH . G 5 HOH A 92 392 75 HOH HOH . G 5 HOH A 93 393 83 HOH HOH . G 5 HOH A 94 394 38 HOH HOH . G 5 HOH A 95 395 86 HOH HOH . G 5 HOH A 96 396 97 HOH HOH . G 5 HOH A 97 397 40 HOH HOH . G 5 HOH A 98 398 104 HOH HOH . G 5 HOH A 99 399 34 HOH HOH . G 5 HOH A 100 400 13 HOH HOH . G 5 HOH A 101 401 76 HOH HOH . G 5 HOH A 102 402 74 HOH HOH . G 5 HOH A 103 403 46 HOH HOH . G 5 HOH A 104 404 84 HOH HOH . G 5 HOH A 105 405 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O14 1VU . . . B 2 -8.519 1.384 -14.192 1 26.5 ? O14 1VU 201 A 1 HETATM 2 P P2 1VU . . . B 2 -8.131 2.365 -15.267 1 25.77 ? P2 1VU 201 A 1 HETATM 3 O O15 1VU . . . B 2 -7.423 1.632 -16.391 1 27.48 -1 O15 1VU 201 A 1 HETATM 4 O O16 1VU . . . B 2 -9.327 3.093 -15.836 1 25.34 -1 O16 1VU 201 A 1 HETATM 5 O O13 1VU . . . B 2 -7.166 3.474 -14.653 1 21.9 ? O13 1VU 201 A 1 HETATM 6 C C23 1VU . . . B 2 -5.919 3.14 -13.984 1 18.72 ? C23 1VU 201 A 1 HETATM 7 C C22 1VU . . . B 2 -4.787 3.415 -14.85 1 17.58 ? C22 1VU 201 A 1 HETATM 8 O O12 1VU . . . B 2 -4.987 2.908 -16.197 1 17.62 ? O12 1VU 201 A 1 HETATM 9 C C16 1VU . . . B 2 -4.732 4.879 -14.828 1 16.68 ? C16 1VU 201 A 1 HETATM 10 N N2 1VU . . . B 2 -3.488 5.391 -15.22 1 15.9 ? N2 1VU 201 A 1 HETATM 11 C C21 1VU . . . B 2 -2.327 5.143 -14.575 1 15.26 ? C21 1VU 201 A 1 HETATM 12 N N6 1VU . . . B 2 -1.926 4.435 -13.494 1 14.67 ? N6 1VU 201 A 1 HETATM 13 C C20 1VU . . . B 2 -0.628 4.422 -13.146 1 14.74 ? C20 1VU 201 A 1 HETATM 14 N N5 1VU . . . B 2 0.306 5.091 -13.833 1 14.69 ? N5 1VU 201 A 1 HETATM 15 C C19 1VU . . . B 2 -0.004 5.821 -14.92 1 14.7 ? C19 1VU 201 A 1 HETATM 16 N N4 1VU . . . B 2 1.002 6.524 -15.622 1 14.6 ? N4 1VU 201 A 1 HETATM 17 C C18 1VU . . . B 2 -1.345 5.878 -15.338 1 14.87 ? C18 1VU 201 A 1 HETATM 18 N N3 1VU . . . B 2 -2.079 6.52 -16.418 1 14.87 ? N3 1VU 201 A 1 HETATM 19 C C17 1VU . . . B 2 -3.377 6.181 -16.274 1 15.49 ? C17 1VU 201 A 1 HETATM 20 O O11 1VU . . . B 2 -5.079 5.302 -13.417 1 16.92 ? O11 1VU 201 A 1 HETATM 21 C C15 1VU . . . B 2 -5.737 4.078 -12.859 1 17.97 ? C15 1VU 201 A 1 HETATM 22 C C14 1VU . . . B 2 -4.852 3.538 -11.805 1 17.64 ? C14 1VU 201 A 1 HETATM 23 O O10 1VU . . . B 2 -5.425 2.283 -11.401 1 17.77 ? O10 1VU 201 A 1 HETATM 24 P P1 1VU . . . B 2 -5.557 1.935 -9.857 1 16.21 ? P1 1VU 201 A 1 HETATM 25 O O8 1VU . . . B 2 -6.712 2.721 -9.29 1 16.68 -1 O8 1VU 201 A 1 HETATM 26 O O9 1VU . . . B 2 -5.762 0.441 -9.767 1 16.73 ? O9 1VU 201 A 1 HETATM 27 O O7 1VU . . . B 2 -4.249 2.422 -9.101 1 16.01 ? O7 1VU 201 A 1 HETATM 28 P P 1VU . . . B 2 -3.041 1.533 -8.548 1 16.01 ? P 1VU 201 A 1 HETATM 29 O O5 1VU . . . B 2 -3.505 0.773 -7.324 1 15.85 ? O5 1VU 201 A 1 HETATM 30 O O6 1VU . . . B 2 -2.493 0.614 -9.611 1 15.21 -1 O6 1VU 201 A 1 HETATM 31 O O4 1VU . . . B 2 -1.973 2.605 -8.06 1 16.25 ? O4 1VU 201 A 1 HETATM 32 C C13 1VU . . . B 2 -1.576 3.69 -8.906 1 16.51 ? C13 1VU 201 A 1 HETATM 33 C C10 1VU . . . B 2 -0.213 4.202 -8.406 1 16.89 ? C10 1VU 201 A 1 HETATM 34 C C11 1VU . . . B 2 0.203 5.436 -9.233 1 16.85 ? C11 1VU 201 A 1 HETATM 35 C C12 1VU . . . B 2 -0.364 4.604 -6.931 1 16.64 ? C12 1VU 201 A 1 HETATM 36 C C9 1VU . . . B 2 0.824 3.066 -8.576 1 17.38 ? C9 1VU 201 A 1 HETATM 37 O O3 1VU . . . B 2 1.12 2.893 -9.932 1 17.8 ? O3 1VU 201 A 1 HETATM 38 C C8 1VU . . . B 2 2.134 3.331 -7.855 1 18.03 ? C8 1VU 201 A 1 HETATM 39 O O2 1VU . . . B 2 2.245 3.128 -6.664 1 17.62 ? O2 1VU 201 A 1 HETATM 40 N N1 1VU . . . B 2 3.263 3.824 -8.592 1 19.33 ? N1 1VU 201 A 1 HETATM 41 C C7 1VU . . . B 2 4.52 4.062 -7.932 1 20.29 ? C7 1VU 201 A 1 HETATM 42 C C6 1VU . . . B 2 4.443 5.297 -7.017 1 21.16 ? C6 1VU 201 A 1 HETATM 43 C C5 1VU . . . B 2 4.205 6.555 -7.86 1 22.77 ? C5 1VU 201 A 1 HETATM 44 O O1 1VU . . . B 2 4.672 6.619 -8.977 1 22.97 ? O1 1VU 201 A 1 HETATM 45 N N 1VU . . . B 2 3.441 7.66 -7.316 1 24.26 ? N 1VU 201 A 1 HETATM 46 C C4 1VU . . . B 2 3.219 8.862 -8.1 1 26.8 ? C4 1VU 201 A 1 HETATM 47 C C3 1VU . . . B 2 4.582 9.51 -8.438 1 28.84 ? C3 1VU 201 A 1 HETATM 48 S S 1VU . . . B 2 4.617 11.245 -7.994 1 31.61 ? S 1VU 201 A 1 HETATM 49 C C2 1VU . . . B 2 4.205 11.262 -6.232 1 31.93 ? C2 1VU 201 A 1 HETATM 50 O O 1VU . . . B 2 4.292 10.245 -5.558 1 31.27 ? O 1VU 201 A 1 HETATM 51 C C1 1VU . . . B 2 3.729 12.543 -5.557 1 31.41 ? C1 1VU 201 A 1 HETATM 52 C C 1VU . . . B 2 3.111 13.465 -6.596 1 31.34 ? C 1VU 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 52 #