data_5H84 # _model_server_result.job_id 5gfr26HO3PHW-RRprw1vNg _model_server_result.datetime_utc '2024-12-01 07:21:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5H84 # _exptl.entry_id 5H84 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5H84 _cell.length_a 38.087 _cell.length_b 38.087 _cell.length_c 187.057 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 177 n n C1 C2 EDO sing 178 n n C1 H11 EDO sing 179 n n C1 H12 EDO sing 180 n n O1 HO1 EDO sing 181 n n C2 O2 EDO sing 182 n n C2 H21 EDO sing 183 n n C2 H22 EDO sing 184 n n O2 HO2 EDO sing 185 n n # _atom_sites.entry_id 5H84 _atom_sites.fract_transf_matrix[1][1] 0.026256 _atom_sites.fract_transf_matrix[1][2] 0.015159 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1VU A 1 201 1 1VU 1VU . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 3 EDO A 1 204 3 EDO EDO . F 4 IPA A 1 205 1 IPA IPA . G 5 HOH A 1 301 1 HOH HOH . G 5 HOH A 2 302 73 HOH HOH . G 5 HOH A 3 303 57 HOH HOH . G 5 HOH A 4 304 96 HOH HOH . G 5 HOH A 5 305 10 HOH HOH . G 5 HOH A 6 306 98 HOH HOH . G 5 HOH A 7 307 45 HOH HOH . G 5 HOH A 8 308 90 HOH HOH . G 5 HOH A 9 309 39 HOH HOH . G 5 HOH A 10 310 21 HOH HOH . G 5 HOH A 11 311 7 HOH HOH . G 5 HOH A 12 312 16 HOH HOH . G 5 HOH A 13 313 37 HOH HOH . G 5 HOH A 14 314 28 HOH HOH . G 5 HOH A 15 315 24 HOH HOH . G 5 HOH A 16 316 33 HOH HOH . G 5 HOH A 17 317 32 HOH HOH . G 5 HOH A 18 318 3 HOH HOH . G 5 HOH A 19 319 26 HOH HOH . G 5 HOH A 20 320 9 HOH HOH . G 5 HOH A 21 321 20 HOH HOH . G 5 HOH A 22 322 8 HOH HOH . G 5 HOH A 23 323 47 HOH HOH . G 5 HOH A 24 324 43 HOH HOH . G 5 HOH A 25 325 53 HOH HOH . G 5 HOH A 26 326 30 HOH HOH . G 5 HOH A 27 327 79 HOH HOH . G 5 HOH A 28 328 88 HOH HOH . G 5 HOH A 29 329 44 HOH HOH . G 5 HOH A 30 330 67 HOH HOH . G 5 HOH A 31 331 55 HOH HOH . G 5 HOH A 32 332 63 HOH HOH . G 5 HOH A 33 333 27 HOH HOH . G 5 HOH A 34 334 64 HOH HOH . G 5 HOH A 35 335 52 HOH HOH . G 5 HOH A 36 336 15 HOH HOH . G 5 HOH A 37 337 77 HOH HOH . G 5 HOH A 38 338 36 HOH HOH . G 5 HOH A 39 339 56 HOH HOH . G 5 HOH A 40 340 23 HOH HOH . G 5 HOH A 41 341 59 HOH HOH . G 5 HOH A 42 342 22 HOH HOH . G 5 HOH A 43 343 17 HOH HOH . G 5 HOH A 44 344 80 HOH HOH . G 5 HOH A 45 345 12 HOH HOH . G 5 HOH A 46 346 61 HOH HOH . G 5 HOH A 47 347 81 HOH HOH . G 5 HOH A 48 348 51 HOH HOH . G 5 HOH A 49 349 14 HOH HOH . G 5 HOH A 50 350 65 HOH HOH . G 5 HOH A 51 351 29 HOH HOH . G 5 HOH A 52 352 11 HOH HOH . G 5 HOH A 53 353 4 HOH HOH . G 5 HOH A 54 354 100 HOH HOH . G 5 HOH A 55 355 19 HOH HOH . G 5 HOH A 56 356 92 HOH HOH . G 5 HOH A 57 357 69 HOH HOH . G 5 HOH A 58 358 70 HOH HOH . G 5 HOH A 59 359 42 HOH HOH . G 5 HOH A 60 360 48 HOH HOH . G 5 HOH A 61 361 60 HOH HOH . G 5 HOH A 62 362 18 HOH HOH . G 5 HOH A 63 363 102 HOH HOH . G 5 HOH A 64 364 6 HOH HOH . G 5 HOH A 65 365 103 HOH HOH . G 5 HOH A 66 366 94 HOH HOH . G 5 HOH A 67 367 72 HOH HOH . G 5 HOH A 68 368 41 HOH HOH . G 5 HOH A 69 369 78 HOH HOH . G 5 HOH A 70 370 50 HOH HOH . G 5 HOH A 71 371 71 HOH HOH . G 5 HOH A 72 372 99 HOH HOH . G 5 HOH A 73 373 35 HOH HOH . G 5 HOH A 74 374 89 HOH HOH . G 5 HOH A 75 375 101 HOH HOH . G 5 HOH A 76 376 5 HOH HOH . G 5 HOH A 77 377 105 HOH HOH . G 5 HOH A 78 378 87 HOH HOH . G 5 HOH A 79 379 68 HOH HOH . G 5 HOH A 80 380 54 HOH HOH . G 5 HOH A 81 381 49 HOH HOH . G 5 HOH A 82 382 58 HOH HOH . G 5 HOH A 83 383 93 HOH HOH . G 5 HOH A 84 384 31 HOH HOH . G 5 HOH A 85 385 85 HOH HOH . G 5 HOH A 86 386 66 HOH HOH . G 5 HOH A 87 387 25 HOH HOH . G 5 HOH A 88 388 91 HOH HOH . G 5 HOH A 89 389 82 HOH HOH . G 5 HOH A 90 390 95 HOH HOH . G 5 HOH A 91 391 2 HOH HOH . G 5 HOH A 92 392 75 HOH HOH . G 5 HOH A 93 393 83 HOH HOH . G 5 HOH A 94 394 38 HOH HOH . G 5 HOH A 95 395 86 HOH HOH . G 5 HOH A 96 396 97 HOH HOH . G 5 HOH A 97 397 40 HOH HOH . G 5 HOH A 98 398 104 HOH HOH . G 5 HOH A 99 399 34 HOH HOH . G 5 HOH A 100 400 13 HOH HOH . G 5 HOH A 101 401 76 HOH HOH . G 5 HOH A 102 402 74 HOH HOH . G 5 HOH A 103 403 46 HOH HOH . G 5 HOH A 104 404 84 HOH HOH . G 5 HOH A 105 405 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 5.317 -5.716 -3.138 1 35.06 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . D 3 3.939 -6.048 -3.37 1 33.67 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . D 3 6.242 -6.44 -4.112 1 34.63 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . D 3 5.527 -7.37 -4.938 1 35.77 ? O2 EDO 203 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #