data_5H8B # _model_server_result.job_id AIIiWfp9g1cwyyoH2QgRUw _model_server_result.datetime_utc '2024-11-24 17:43:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h8b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":416}' # _entry.id 5H8B # _exptl.entry_id 5H8B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 23 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H8B _cell.length_a 126.62 _cell.length_b 126.62 _cell.length_c 124.62 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H8B _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,NA 1 1 B,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,OA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 FA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N ? 3 JA N N ? 3 KA N N ? 3 LA N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 132 n n C1 C2 EDO sing 133 n n C1 H11 EDO sing 134 n n C1 H12 EDO sing 135 n n O1 HO1 EDO sing 136 n n C2 O2 EDO sing 137 n n C2 H21 EDO sing 138 n n C2 H22 EDO sing 139 n n O2 HO2 EDO sing 140 n n # _atom_sites.entry_id 5H8B _atom_sites.fract_transf_matrix[1][1] 0.007898 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007898 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 401 1 SO4 SO4 . D 2 SO4 A 1 402 2 SO4 SO4 . E 2 SO4 A 1 403 4 SO4 SO4 . F 2 SO4 A 1 404 5 SO4 SO4 . G 2 SO4 A 1 405 8 SO4 SO4 . H 2 SO4 A 1 406 10 SO4 SO4 . I 2 SO4 A 1 407 12 SO4 SO4 . J 3 EDO A 1 408 2 EDO EDO . K 3 EDO A 1 409 3 EDO EDO . L 3 EDO A 1 410 8 EDO EDO . M 3 EDO A 1 411 12 EDO EDO . N 3 EDO A 1 412 20 EDO EDO . O 3 EDO A 1 413 21 EDO EDO . P 3 EDO A 1 414 22 EDO EDO . Q 3 EDO A 1 415 26 EDO EDO . R 3 EDO A 1 416 27 EDO EDO . S 4 5Y2 A 1 417 1 5Y2 INH . T 2 SO4 B 1 401 3 SO4 SO4 . U 2 SO4 B 1 402 7 SO4 SO4 . V 2 SO4 B 1 403 9 SO4 SO4 . W 2 SO4 B 1 404 11 SO4 SO4 . X 2 SO4 B 1 405 13 SO4 SO4 . Y 3 EDO B 1 406 1 EDO EDO . Z 3 EDO B 1 407 4 EDO EDO . AA 3 EDO B 1 408 7 EDO EDO . BA 3 EDO B 1 409 9 EDO EDO . CA 3 EDO B 1 410 11 EDO EDO . DA 3 EDO B 1 411 13 EDO EDO . EA 3 EDO B 1 412 14 EDO EDO . FA 3 EDO B 1 413 16 EDO EDO . GA 3 EDO B 1 414 17 EDO EDO . HA 3 EDO B 1 415 18 EDO EDO . IA 3 EDO B 1 416 19 EDO EDO . JA 3 EDO B 1 417 23 EDO EDO . KA 3 EDO B 1 418 24 EDO EDO . LA 3 EDO B 1 419 25 EDO EDO . MA 4 5Y2 B 1 420 2 5Y2 INH . NA 5 HOH A 1 501 64 HOH HOH . NA 5 HOH A 2 502 134 HOH HOH . NA 5 HOH A 3 503 20 HOH HOH . NA 5 HOH A 4 504 24 HOH HOH . NA 5 HOH A 5 505 135 HOH HOH . NA 5 HOH A 6 506 143 HOH HOH . NA 5 HOH A 7 507 21 HOH HOH . NA 5 HOH A 8 508 179 HOH HOH . NA 5 HOH A 9 509 103 HOH HOH . NA 5 HOH A 10 510 133 HOH HOH . NA 5 HOH A 11 511 233 HOH HOH . NA 5 HOH A 12 512 48 HOH HOH . NA 5 HOH A 13 513 145 HOH HOH . NA 5 HOH A 14 514 11 HOH HOH . NA 5 HOH A 15 515 142 HOH HOH . NA 5 HOH A 16 516 92 HOH HOH . NA 5 HOH A 17 517 33 HOH HOH . NA 5 HOH A 18 518 169 HOH HOH . NA 5 HOH A 19 519 199 HOH HOH . NA 5 HOH A 20 520 224 HOH HOH . NA 5 HOH A 21 521 256 HOH HOH . NA 5 HOH A 22 522 157 HOH HOH . NA 5 HOH A 23 523 68 HOH HOH . NA 5 HOH A 24 524 54 HOH HOH . NA 5 HOH A 25 525 173 HOH HOH . NA 5 HOH A 26 526 23 HOH HOH . NA 5 HOH A 27 527 148 HOH HOH . NA 5 HOH A 28 528 9 HOH HOH . NA 5 HOH A 29 529 17 HOH HOH . NA 5 HOH A 30 530 108 HOH HOH . NA 5 HOH A 31 531 111 HOH HOH . NA 5 HOH A 32 532 82 HOH HOH . NA 5 HOH A 33 533 163 HOH HOH . NA 5 HOH A 34 534 244 HOH HOH . NA 5 HOH A 35 535 69 HOH HOH . NA 5 HOH A 36 536 115 HOH HOH . NA 5 HOH A 37 537 22 HOH HOH . NA 5 HOH A 38 538 112 HOH HOH . NA 5 HOH A 39 539 46 HOH HOH . NA 5 HOH A 40 540 131 HOH HOH . NA 5 HOH A 41 541 245 HOH HOH . NA 5 HOH A 42 542 255 HOH HOH . NA 5 HOH A 43 543 228 HOH HOH . NA 5 HOH A 44 544 95 HOH HOH . NA 5 HOH A 45 545 212 HOH HOH . NA 5 HOH A 46 546 8 HOH HOH . NA 5 HOH A 47 547 195 HOH HOH . NA 5 HOH A 48 548 1 HOH HOH . NA 5 HOH A 49 549 97 HOH HOH . NA 5 HOH A 50 550 53 HOH HOH . NA 5 HOH A 51 551 102 HOH HOH . NA 5 HOH A 52 552 172 HOH HOH . NA 5 HOH A 53 553 165 HOH HOH . NA 5 HOH A 54 554 189 HOH HOH . NA 5 HOH A 55 555 153 HOH HOH . NA 5 HOH A 56 556 34 HOH HOH . NA 5 HOH A 57 557 31 HOH HOH . NA 5 HOH A 58 558 75 HOH HOH . NA 5 HOH A 59 559 222 HOH HOH . NA 5 HOH A 60 560 214 HOH HOH . NA 5 HOH A 61 561 188 HOH HOH . NA 5 HOH A 62 562 81 HOH HOH . NA 5 HOH A 63 563 198 HOH HOH . NA 5 HOH A 64 564 205 HOH HOH . NA 5 HOH A 65 565 56 HOH HOH . NA 5 HOH A 66 566 257 HOH HOH . NA 5 HOH A 67 567 85 HOH HOH . NA 5 HOH A 68 568 110 HOH HOH . NA 5 HOH A 69 569 171 HOH HOH . NA 5 HOH A 70 570 96 HOH HOH . NA 5 HOH A 71 571 223 HOH HOH . NA 5 HOH A 72 572 248 HOH HOH . NA 5 HOH A 73 573 259 HOH HOH . NA 5 HOH A 74 574 39 HOH HOH . NA 5 HOH A 75 575 242 HOH HOH . NA 5 HOH A 76 576 187 HOH HOH . NA 5 HOH A 77 577 59 HOH HOH . NA 5 HOH A 78 578 175 HOH HOH . NA 5 HOH A 79 579 57 HOH HOH . NA 5 HOH A 80 580 114 HOH HOH . NA 5 HOH A 81 581 13 HOH HOH . NA 5 HOH A 82 582 186 HOH HOH . NA 5 HOH A 83 583 265 HOH HOH . NA 5 HOH A 84 584 229 HOH HOH . NA 5 HOH A 85 585 116 HOH HOH . NA 5 HOH A 86 586 37 HOH HOH . NA 5 HOH A 87 587 5 HOH HOH . NA 5 HOH A 88 588 123 HOH HOH . NA 5 HOH A 89 589 99 HOH HOH . NA 5 HOH A 90 590 58 HOH HOH . NA 5 HOH A 91 591 62 HOH HOH . NA 5 HOH A 92 592 120 HOH HOH . NA 5 HOH A 93 593 162 HOH HOH . NA 5 HOH A 94 594 146 HOH HOH . NA 5 HOH A 95 595 19 HOH HOH . NA 5 HOH A 96 596 232 HOH HOH . NA 5 HOH A 97 597 234 HOH HOH . NA 5 HOH A 98 598 90 HOH HOH . NA 5 HOH A 99 599 100 HOH HOH . NA 5 HOH A 100 600 109 HOH HOH . NA 5 HOH A 101 601 87 HOH HOH . NA 5 HOH A 102 602 164 HOH HOH . NA 5 HOH A 103 603 29 HOH HOH . NA 5 HOH A 104 604 225 HOH HOH . NA 5 HOH A 105 605 261 HOH HOH . NA 5 HOH A 106 606 215 HOH HOH . NA 5 HOH A 107 607 183 HOH HOH . NA 5 HOH A 108 608 89 HOH HOH . NA 5 HOH A 109 609 149 HOH HOH . NA 5 HOH A 110 610 226 HOH HOH . NA 5 HOH A 111 611 7 HOH HOH . NA 5 HOH A 112 612 204 HOH HOH . NA 5 HOH A 113 613 104 HOH HOH . NA 5 HOH A 114 614 177 HOH HOH . NA 5 HOH A 115 615 4 HOH HOH . NA 5 HOH A 116 616 209 HOH HOH . NA 5 HOH A 117 617 201 HOH HOH . NA 5 HOH A 118 618 98 HOH HOH . NA 5 HOH A 119 619 121 HOH HOH . NA 5 HOH A 120 620 210 HOH HOH . NA 5 HOH A 121 621 260 HOH HOH . NA 5 HOH A 122 622 194 HOH HOH . NA 5 HOH A 123 623 213 HOH HOH . NA 5 HOH A 124 624 180 HOH HOH . NA 5 HOH A 125 625 216 HOH HOH . NA 5 HOH A 126 626 118 HOH HOH . NA 5 HOH A 127 627 254 HOH HOH . NA 5 HOH A 128 628 262 HOH HOH . NA 5 HOH A 129 629 147 HOH HOH . NA 5 HOH A 130 630 258 HOH HOH . OA 5 HOH B 1 501 32 HOH HOH . OA 5 HOH B 2 502 206 HOH HOH . OA 5 HOH B 3 503 15 HOH HOH . OA 5 HOH B 4 504 93 HOH HOH . OA 5 HOH B 5 505 155 HOH HOH . OA 5 HOH B 6 506 141 HOH HOH . OA 5 HOH B 7 507 14 HOH HOH . OA 5 HOH B 8 508 30 HOH HOH . OA 5 HOH B 9 509 152 HOH HOH . OA 5 HOH B 10 510 159 HOH HOH . OA 5 HOH B 11 511 246 HOH HOH . OA 5 HOH B 12 512 79 HOH HOH . OA 5 HOH B 13 513 138 HOH HOH . OA 5 HOH B 14 514 77 HOH HOH . OA 5 HOH B 15 515 249 HOH HOH . OA 5 HOH B 16 516 240 HOH HOH . OA 5 HOH B 17 517 151 HOH HOH . OA 5 HOH B 18 518 105 HOH HOH . OA 5 HOH B 19 519 2 HOH HOH . OA 5 HOH B 20 520 61 HOH HOH . OA 5 HOH B 21 521 144 HOH HOH . OA 5 HOH B 22 522 101 HOH HOH . OA 5 HOH B 23 523 150 HOH HOH . OA 5 HOH B 24 524 49 HOH HOH . OA 5 HOH B 25 525 16 HOH HOH . OA 5 HOH B 26 526 140 HOH HOH . OA 5 HOH B 27 527 70 HOH HOH . OA 5 HOH B 28 528 52 HOH HOH . OA 5 HOH B 29 529 132 HOH HOH . OA 5 HOH B 30 530 129 HOH HOH . OA 5 HOH B 31 531 40 HOH HOH . OA 5 HOH B 32 532 168 HOH HOH . OA 5 HOH B 33 533 128 HOH HOH . OA 5 HOH B 34 534 84 HOH HOH . OA 5 HOH B 35 535 12 HOH HOH . OA 5 HOH B 36 536 166 HOH HOH . OA 5 HOH B 37 537 139 HOH HOH . OA 5 HOH B 38 538 263 HOH HOH . OA 5 HOH B 39 539 26 HOH HOH . OA 5 HOH B 40 540 42 HOH HOH . OA 5 HOH B 41 541 219 HOH HOH . OA 5 HOH B 42 542 182 HOH HOH . OA 5 HOH B 43 543 45 HOH HOH . OA 5 HOH B 44 544 238 HOH HOH . OA 5 HOH B 45 545 184 HOH HOH . OA 5 HOH B 46 546 35 HOH HOH . OA 5 HOH B 47 547 176 HOH HOH . OA 5 HOH B 48 548 80 HOH HOH . OA 5 HOH B 49 549 227 HOH HOH . OA 5 HOH B 50 550 44 HOH HOH . OA 5 HOH B 51 551 60 HOH HOH . OA 5 HOH B 52 552 202 HOH HOH . OA 5 HOH B 53 553 86 HOH HOH . OA 5 HOH B 54 554 36 HOH HOH . OA 5 HOH B 55 555 251 HOH HOH . OA 5 HOH B 56 556 170 HOH HOH . OA 5 HOH B 57 557 156 HOH HOH . OA 5 HOH B 58 558 72 HOH HOH . OA 5 HOH B 59 559 88 HOH HOH . OA 5 HOH B 60 560 203 HOH HOH . OA 5 HOH B 61 561 43 HOH HOH . OA 5 HOH B 62 562 25 HOH HOH . OA 5 HOH B 63 563 28 HOH HOH . OA 5 HOH B 64 564 83 HOH HOH . OA 5 HOH B 65 565 252 HOH HOH . OA 5 HOH B 66 566 47 HOH HOH . OA 5 HOH B 67 567 76 HOH HOH . OA 5 HOH B 68 568 136 HOH HOH . OA 5 HOH B 69 569 217 HOH HOH . OA 5 HOH B 70 570 178 HOH HOH . OA 5 HOH B 71 571 167 HOH HOH . OA 5 HOH B 72 572 235 HOH HOH . OA 5 HOH B 73 573 91 HOH HOH . OA 5 HOH B 74 574 50 HOH HOH . OA 5 HOH B 75 575 125 HOH HOH . OA 5 HOH B 76 576 200 HOH HOH . OA 5 HOH B 77 577 94 HOH HOH . OA 5 HOH B 78 578 130 HOH HOH . OA 5 HOH B 79 579 67 HOH HOH . OA 5 HOH B 80 580 63 HOH HOH . OA 5 HOH B 81 581 220 HOH HOH . OA 5 HOH B 82 582 65 HOH HOH . OA 5 HOH B 83 583 106 HOH HOH . OA 5 HOH B 84 584 207 HOH HOH . OA 5 HOH B 85 585 239 HOH HOH . OA 5 HOH B 86 586 190 HOH HOH . OA 5 HOH B 87 587 253 HOH HOH . OA 5 HOH B 88 588 113 HOH HOH . OA 5 HOH B 89 589 192 HOH HOH . OA 5 HOH B 90 590 55 HOH HOH . OA 5 HOH B 91 591 10 HOH HOH . OA 5 HOH B 92 592 73 HOH HOH . OA 5 HOH B 93 593 66 HOH HOH . OA 5 HOH B 94 594 124 HOH HOH . OA 5 HOH B 95 595 74 HOH HOH . OA 5 HOH B 96 596 161 HOH HOH . OA 5 HOH B 97 597 264 HOH HOH . OA 5 HOH B 98 598 197 HOH HOH . OA 5 HOH B 99 599 78 HOH HOH . OA 5 HOH B 100 600 185 HOH HOH . OA 5 HOH B 101 601 3 HOH HOH . OA 5 HOH B 102 602 51 HOH HOH . OA 5 HOH B 103 603 160 HOH HOH . OA 5 HOH B 104 604 250 HOH HOH . OA 5 HOH B 105 605 154 HOH HOH . OA 5 HOH B 106 606 6 HOH HOH . OA 5 HOH B 107 607 243 HOH HOH . OA 5 HOH B 108 608 18 HOH HOH . OA 5 HOH B 109 609 127 HOH HOH . OA 5 HOH B 110 610 237 HOH HOH . OA 5 HOH B 111 611 231 HOH HOH . OA 5 HOH B 112 612 137 HOH HOH . OA 5 HOH B 113 613 218 HOH HOH . OA 5 HOH B 114 614 174 HOH HOH . OA 5 HOH B 115 615 247 HOH HOH . OA 5 HOH B 116 616 208 HOH HOH . OA 5 HOH B 117 617 158 HOH HOH . OA 5 HOH B 118 618 126 HOH HOH . OA 5 HOH B 119 619 266 HOH HOH . OA 5 HOH B 120 620 71 HOH HOH . OA 5 HOH B 121 621 122 HOH HOH . OA 5 HOH B 122 622 221 HOH HOH . OA 5 HOH B 123 623 230 HOH HOH . OA 5 HOH B 124 624 191 HOH HOH . OA 5 HOH B 125 625 236 HOH HOH . OA 5 HOH B 126 626 211 HOH HOH . OA 5 HOH B 127 627 193 HOH HOH . OA 5 HOH B 128 628 241 HOH HOH . OA 5 HOH B 129 629 119 HOH HOH . OA 5 HOH B 130 630 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . IA 3 -9.552 -49.421 38.266 1 36.64 ? C1 EDO 416 B 1 HETATM 2 O O1 EDO . . . IA 3 -10.641 -50.29 38.02 1 32.5 ? O1 EDO 416 B 1 HETATM 3 C C2 EDO . . . IA 3 -9.477 -48.381 37.142 1 40.86 ? C2 EDO 416 B 1 HETATM 4 O O2 EDO . . . IA 3 -9.542 -49.06 35.882 1 45.42 ? O2 EDO 416 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #