data_5H8H
#
_model_server_result.job_id            8sfjKSDS7MkylGhqZJbdzA 
_model_server_result.datetime_utc      '2025-06-20 16:40:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5h8h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":303}' 
#
_entry.id    5H8H 
#
_exptl.entry_id    5H8H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              300.379 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7-[[ethyl(phenyl)amino]methyl]-2-methyl-[1,3,4]thiadiazolo[3,2-a]pyrimidin-5-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5H8H 
_cell.length_a            55.591 
_cell.length_b            89.659 
_cell.length_c            122.439 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5H8H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 31 A CYS 31 1_555 A SG CYS 57 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 A SG CYS 38 A CYS 38 1_555 A SG CYS 58 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 A SG CYS 228 A CYS 228 1_555 A SG CYS 283 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 B SG CYS 29 B CYS 29 1_555 B SG CYS 63 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 B SG CYS 45 B CYS 45 1_555 B SG CYS 64 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'C15 H16 N4 O S' 
_chem_comp.formula_weight    300.379 
_chem_comp.id                5YC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7-[[ethyl(phenyl)amino]methyl]-2-methyl-[1,3,4]thiadiazolo[3,2-a]pyrimidin-5-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C5 5YC doub 1 n n 
C8 C7 5YC sing 2 n n 
N3 C7 5YC doub 3 n n 
N3 N1 5YC sing 4 n n 
C5 N1 5YC sing 5 n n 
C5 C4 5YC sing 6 n n 
C7 S 5YC sing 7 n n 
N1 C6 5YC sing 8 n n 
C C1 5YC sing 9 n n 
C4 C3 5YC doub 10 n n 
C6 S 5YC sing 11 n n 
C6 N2 5YC doub 12 n n 
C3 N2 5YC sing 13 n n 
C3 C2 5YC sing 14 n n 
C1 N 5YC sing 15 n n 
C2 N 5YC sing 16 n n 
N C9 5YC sing 17 n n 
C9 C14 5YC doub 18 n y 
C9 C10 5YC sing 19 n y 
C14 C13 5YC sing 20 n y 
C10 C11 5YC doub 21 n y 
C13 C12 5YC doub 22 n y 
C11 C12 5YC sing 23 n y 
C4 H1 5YC sing 24 n n 
C14 H2 5YC sing 25 n n 
C11 H3 5YC sing 26 n n 
C8 H4 5YC sing 27 n n 
C8 H5 5YC sing 28 n n 
C8 H6 5YC sing 29 n n 
C10 H7 5YC sing 30 n n 
C12 H8 5YC sing 31 n n 
C13 H9 5YC sing 32 n n 
C2 H11 5YC sing 33 n n 
C2 H12 5YC sing 34 n n 
C1 H13 5YC sing 35 n n 
C1 H14 5YC sing 36 n n 
C H15 5YC sing 37 n n 
C H16 5YC sing 38 n n 
C H17 5YC sing 39 n n 
#
_atom_sites.entry_id                     5H8H 
_atom_sites.fract_transf_matrix[1][1]    0.017989 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011153 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008167 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ACT A 1 301 1 ACT ACT . 
D 4 GLU A 1 302 1 GLU GLU . 
E 5 CA B 1 301 1 CA CA . 
F 6 GLY B 1 302 1 GLY GLY . 
G 7 5YC B 1 303 1 5YC 5YC . 
H 8 HOH A 1 401 61 HOH HOH . 
H 8 HOH A 2 402 81 HOH HOH . 
H 8 HOH A 3 403 6 HOH HOH . 
H 8 HOH A 4 404 51 HOH HOH . 
H 8 HOH A 5 405 7 HOH HOH . 
H 8 HOH A 6 406 33 HOH HOH . 
H 8 HOH A 7 407 112 HOH HOH . 
H 8 HOH A 8 408 14 HOH HOH . 
H 8 HOH A 9 409 3 HOH HOH . 
H 8 HOH A 10 410 73 HOH HOH . 
H 8 HOH A 11 411 8 HOH HOH . 
H 8 HOH A 12 412 115 HOH HOH . 
H 8 HOH A 13 413 39 HOH HOH . 
H 8 HOH A 14 414 41 HOH HOH . 
H 8 HOH A 15 415 84 HOH HOH . 
H 8 HOH A 16 416 117 HOH HOH . 
H 8 HOH A 17 417 21 HOH HOH . 
H 8 HOH A 18 418 65 HOH HOH . 
H 8 HOH A 19 419 22 HOH HOH . 
H 8 HOH A 20 420 2 HOH HOH . 
H 8 HOH A 21 421 69 HOH HOH . 
H 8 HOH A 22 422 75 HOH HOH . 
H 8 HOH A 23 423 43 HOH HOH . 
H 8 HOH A 24 424 30 HOH HOH . 
H 8 HOH A 25 425 76 HOH HOH . 
H 8 HOH A 26 426 93 HOH HOH . 
H 8 HOH A 27 427 133 HOH HOH . 
H 8 HOH A 28 428 31 HOH HOH . 
H 8 HOH A 29 429 68 HOH HOH . 
H 8 HOH A 30 430 57 HOH HOH . 
H 8 HOH A 31 431 102 HOH HOH . 
H 8 HOH A 32 432 36 HOH HOH . 
H 8 HOH A 33 433 10 HOH HOH . 
H 8 HOH A 34 434 99 HOH HOH . 
H 8 HOH A 35 435 109 HOH HOH . 
H 8 HOH A 36 436 32 HOH HOH . 
H 8 HOH A 37 437 145 HOH HOH . 
H 8 HOH A 38 438 1 HOH HOH . 
H 8 HOH A 39 439 27 HOH HOH . 
H 8 HOH A 40 440 83 HOH HOH . 
H 8 HOH A 41 441 72 HOH HOH . 
H 8 HOH A 42 442 13 HOH HOH . 
H 8 HOH A 43 443 101 HOH HOH . 
H 8 HOH A 44 444 139 HOH HOH . 
H 8 HOH A 45 445 140 HOH HOH . 
H 8 HOH A 46 446 19 HOH HOH . 
H 8 HOH A 47 447 138 HOH HOH . 
H 8 HOH A 48 448 49 HOH HOH . 
H 8 HOH A 49 449 111 HOH HOH . 
H 8 HOH A 50 450 17 HOH HOH . 
H 8 HOH A 51 451 64 HOH HOH . 
H 8 HOH A 52 452 29 HOH HOH . 
H 8 HOH A 53 453 80 HOH HOH . 
H 8 HOH A 54 454 63 HOH HOH . 
H 8 HOH A 55 455 89 HOH HOH . 
H 8 HOH A 56 456 28 HOH HOH . 
H 8 HOH A 57 457 53 HOH HOH . 
H 8 HOH A 58 458 48 HOH HOH . 
H 8 HOH A 59 459 146 HOH HOH . 
H 8 HOH A 60 460 12 HOH HOH . 
H 8 HOH A 61 461 118 HOH HOH . 
H 8 HOH A 62 462 87 HOH HOH . 
H 8 HOH A 63 463 143 HOH HOH . 
H 8 HOH A 64 464 16 HOH HOH . 
H 8 HOH A 65 465 52 HOH HOH . 
H 8 HOH A 66 466 113 HOH HOH . 
H 8 HOH A 67 467 20 HOH HOH . 
H 8 HOH A 68 468 45 HOH HOH . 
H 8 HOH A 69 469 23 HOH HOH . 
H 8 HOH A 70 470 70 HOH HOH . 
H 8 HOH A 71 471 141 HOH HOH . 
H 8 HOH A 72 472 94 HOH HOH . 
H 8 HOH A 73 473 5 HOH HOH . 
H 8 HOH A 74 474 38 HOH HOH . 
H 8 HOH A 75 475 96 HOH HOH . 
H 8 HOH A 76 476 137 HOH HOH . 
H 8 HOH A 77 477 97 HOH HOH . 
H 8 HOH A 78 478 134 HOH HOH . 
H 8 HOH A 79 479 131 HOH HOH . 
H 8 HOH A 80 480 120 HOH HOH . 
H 8 HOH A 81 481 127 HOH HOH . 
H 8 HOH A 82 482 98 HOH HOH . 
H 8 HOH A 83 483 95 HOH HOH . 
H 8 HOH A 84 484 110 HOH HOH . 
H 8 HOH A 85 485 100 HOH HOH . 
H 8 HOH A 86 486 123 HOH HOH . 
H 8 HOH A 87 487 135 HOH HOH . 
H 8 HOH A 88 488 78 HOH HOH . 
I 8 HOH B 1 401 37 HOH HOH . 
I 8 HOH B 2 402 79 HOH HOH . 
I 8 HOH B 3 403 58 HOH HOH . 
I 8 HOH B 4 404 15 HOH HOH . 
I 8 HOH B 5 405 105 HOH HOH . 
I 8 HOH B 6 406 114 HOH HOH . 
I 8 HOH B 7 407 67 HOH HOH . 
I 8 HOH B 8 408 18 HOH HOH . 
I 8 HOH B 9 409 132 HOH HOH . 
I 8 HOH B 10 410 86 HOH HOH . 
I 8 HOH B 11 411 35 HOH HOH . 
I 8 HOH B 12 412 59 HOH HOH . 
I 8 HOH B 13 413 77 HOH HOH . 
I 8 HOH B 14 414 104 HOH HOH . 
I 8 HOH B 15 415 144 HOH HOH . 
I 8 HOH B 16 416 116 HOH HOH . 
I 8 HOH B 17 417 4 HOH HOH . 
I 8 HOH B 18 418 82 HOH HOH . 
I 8 HOH B 19 419 26 HOH HOH . 
I 8 HOH B 20 420 9 HOH HOH . 
I 8 HOH B 21 421 34 HOH HOH . 
I 8 HOH B 22 422 121 HOH HOH . 
I 8 HOH B 23 423 54 HOH HOH . 
I 8 HOH B 24 424 11 HOH HOH . 
I 8 HOH B 25 425 50 HOH HOH . 
I 8 HOH B 26 426 55 HOH HOH . 
I 8 HOH B 27 427 125 HOH HOH . 
I 8 HOH B 28 428 129 HOH HOH . 
I 8 HOH B 29 429 124 HOH HOH . 
I 8 HOH B 30 430 47 HOH HOH . 
I 8 HOH B 31 431 66 HOH HOH . 
I 8 HOH B 32 432 74 HOH HOH . 
I 8 HOH B 33 433 88 HOH HOH . 
I 8 HOH B 34 434 122 HOH HOH . 
I 8 HOH B 35 435 25 HOH HOH . 
I 8 HOH B 36 436 42 HOH HOH . 
I 8 HOH B 37 437 46 HOH HOH . 
I 8 HOH B 38 438 71 HOH HOH . 
I 8 HOH B 39 439 119 HOH HOH . 
I 8 HOH B 40 440 56 HOH HOH . 
I 8 HOH B 41 441 24 HOH HOH . 
I 8 HOH B 42 442 62 HOH HOH . 
I 8 HOH B 43 443 130 HOH HOH . 
I 8 HOH B 44 444 44 HOH HOH . 
I 8 HOH B 45 445 60 HOH HOH . 
I 8 HOH B 46 446 91 HOH HOH . 
I 8 HOH B 47 447 90 HOH HOH . 
I 8 HOH B 48 448 40 HOH HOH . 
I 8 HOH B 49 449 142 HOH HOH . 
I 8 HOH B 50 450 85 HOH HOH . 
I 8 HOH B 51 451 136 HOH HOH . 
I 8 HOH B 52 452 92 HOH HOH . 
I 8 HOH B 53 453 128 HOH HOH . 
I 8 HOH B 54 454 106 HOH HOH . 
I 8 HOH B 55 455 126 HOH HOH . 
I 8 HOH B 56 456 103 HOH HOH . 
I 8 HOH B 57 457 107 HOH HOH . 
I 8 HOH B 58 458 108 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 5YC . . . G 7 14.822 -14.3 -26.478 1 41.35 ? C4 5YC 303 B 1 
HETATM 2 C C14 5YC . . . G 7 11.908 -16.005 -23.249 1 28.45 ? C14 5YC 303 B 1 
HETATM 3 C C5 5YC . . . G 7 15.264 -13.083 -27.121 1 41.98 ? C5 5YC 303 B 1 
HETATM 4 C C6 5YC . . . G 7 17.346 -13.574 -26.05 1 39.32 ? C6 5YC 303 B 1 
HETATM 5 C C11 5YC . . . G 7 13.364 -14.049 -21.928 1 30.66 ? C11 5YC 303 B 1 
HETATM 6 C C7 5YC . . . G 7 18.48 -11.637 -26.932 1 41.17 ? C7 5YC 303 B 1 
HETATM 7 C C8 5YC . . . G 7 19.439 -10.569 -27.34 1 39.16 ? C8 5YC 303 B 1 
HETATM 8 C C9 5YC . . . G 7 13.225 -15.727 -23.66 1 28.77 ? C9 5YC 303 B 1 
HETATM 9 C C10 5YC . . . G 7 13.932 -14.711 -23.008 1 27.13 ? C10 5YC 303 B 1 
HETATM 10 C C12 5YC . . . G 7 12.079 -14.348 -21.517 1 34.1 ? C12 5YC 303 B 1 
HETATM 11 C C13 5YC . . . G 7 11.347 -15.311 -22.189 1 28.89 ? C13 5YC 303 B 1 
HETATM 12 N N1 5YC . . . G 7 16.6 -12.748 -26.836 1 40.58 ? N1 5YC 303 B 1 
HETATM 13 N N2 5YC . . . G 7 16.962 -14.667 -25.463 1 42.05 ? N2 5YC 303 B 1 
HETATM 14 C C3 5YC . . . G 7 15.664 -15.033 -25.698 1 39.59 ? C3 5YC 303 B 1 
HETATM 15 N N3 5YC . . . G 7 17.249 -11.641 -27.309 1 43.31 ? N3 5YC 303 B 1 
HETATM 16 O O 5YC . . . G 7 14.627 -12.412 -27.911 1 42.86 ? O 5YC 303 B 1 
HETATM 17 S S 5YC . . . G 7 18.965 -12.966 -25.933 1 36.83 ? S 5YC 303 B 1 
HETATM 18 C C2 5YC . . . G 7 15.24 -16.327 -25.063 1 34.91 ? C2 5YC 303 B 1 
HETATM 19 N N 5YC . . . G 7 13.83 -16.475 -24.73 1 33.02 ? N 5YC 303 B 1 
HETATM 20 C C1 5YC . . . G 7 13.117 -17.649 -25.407 1 33.59 ? C1 5YC 303 B 1 
HETATM 21 C C 5YC . . . G 7 12.148 -17.35 -26.509 1 31.03 ? C 5YC 303 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#