data_5H8N # _model_server_result.job_id '_KpWVPuoLKgAlpJBbnA0YQ' _model_server_result.datetime_utc '2024-11-05 06:49:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5H8N # _exptl.entry_id 5H8N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.439 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[[(4-fluorophenyl)sulfonylamino]methyl]-~{N}-(pyridin-3-ylmethyl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H8N _cell.length_a 54.655 _cell.length_b 89.791 _cell.length_c 124.695 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 31 1_555 A SG CYS 57 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 38 A CYS 38 1_555 A SG CYS 58 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 228 A CYS 228 1_555 A SG CYS 283 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 B SG CYS 29 B CYS 29 1_555 B SG CYS 63 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 B SG CYS 45 B CYS 45 1_555 B SG CYS 64 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C20 H18 F N3 O3 S' _chem_comp.formula_weight 399.439 _chem_comp.id 5YD _chem_comp.mon_nstd_flag . _chem_comp.name 4-[[(4-fluorophenyl)sulfonylamino]methyl]-~{N}-(pyridin-3-ylmethyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C12 5YD doub 1 n y C13 C14 5YD sing 2 n y C12 C11 5YD sing 3 n y O10 C9 5YD doub 4 n n O21 S19 5YD doub 5 n n C24 C23 5YD doub 6 n y C24 C25 5YD sing 7 n y C23 C22 5YD sing 8 n y C17 C14 5YD sing 9 n n C17 N18 5YD sing 10 n n C14 C15 5YD doub 11 n y C11 C9 5YD sing 12 n n C11 C16 5YD doub 13 n y C9 N8 5YD sing 14 n n F28 C25 5YD sing 15 n n N18 S19 5YD sing 16 n n C25 C26 5YD doub 17 n y C22 S19 5YD sing 18 n n C22 C27 5YD doub 19 n y S19 O20 5YD doub 20 n n C15 C16 5YD sing 21 n y N8 C7 5YD sing 22 n n C7 C3 5YD sing 23 n n C3 C4 5YD doub 24 n y C3 C2 5YD sing 25 n y C26 C27 5YD sing 26 n y C4 N5 5YD sing 27 n y C2 C1 5YD doub 28 n y N5 C6 5YD doub 29 n y C1 C6 5YD sing 30 n y C4 H1 5YD sing 31 n n C6 H2 5YD sing 32 n n C7 H3 5YD sing 33 n n C7 H4 5YD sing 34 n n C12 H5 5YD sing 35 n n C13 H6 5YD sing 36 n n C1 H7 5YD sing 37 n n C2 H8 5YD sing 38 n n N8 H9 5YD sing 39 n n C15 H10 5YD sing 40 n n C16 H11 5YD sing 41 n n C17 H12 5YD sing 42 n n C17 H13 5YD sing 43 n n N18 H14 5YD sing 44 n n C23 H15 5YD sing 45 n n C24 H16 5YD sing 46 n n C26 H17 5YD sing 47 n n C27 H18 5YD sing 48 n n # _atom_sites.entry_id 5H8N _atom_sites.fract_transf_matrix[1][1] 0.018297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00802 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GLU A 1 301 1 GLU GLU . D 4 5YD A 1 302 1 5YD DRG . E 5 CA B 1 301 1 CA CA . F 6 GLY B 1 302 1 GLY GLY . G 7 HOH A 1 401 8 HOH HOH . G 7 HOH A 2 402 6 HOH HOH . G 7 HOH A 3 403 77 HOH HOH . G 7 HOH A 4 404 61 HOH HOH . G 7 HOH A 5 405 44 HOH HOH . G 7 HOH A 6 406 103 HOH HOH . G 7 HOH A 7 407 18 HOH HOH . G 7 HOH A 8 408 23 HOH HOH . G 7 HOH A 9 409 7 HOH HOH . G 7 HOH A 10 410 95 HOH HOH . G 7 HOH A 11 411 30 HOH HOH . G 7 HOH A 12 412 4 HOH HOH . G 7 HOH A 13 413 27 HOH HOH . G 7 HOH A 14 414 106 HOH HOH . G 7 HOH A 15 415 2 HOH HOH . G 7 HOH A 16 416 57 HOH HOH . G 7 HOH A 17 417 37 HOH HOH . G 7 HOH A 18 418 92 HOH HOH . G 7 HOH A 19 419 11 HOH HOH . G 7 HOH A 20 420 28 HOH HOH . G 7 HOH A 21 421 16 HOH HOH . G 7 HOH A 22 422 80 HOH HOH . G 7 HOH A 23 423 13 HOH HOH . G 7 HOH A 24 424 55 HOH HOH . G 7 HOH A 25 425 87 HOH HOH . G 7 HOH A 26 426 72 HOH HOH . G 7 HOH A 27 427 36 HOH HOH . G 7 HOH A 28 428 12 HOH HOH . G 7 HOH A 29 429 50 HOH HOH . G 7 HOH A 30 430 20 HOH HOH . G 7 HOH A 31 431 120 HOH HOH . G 7 HOH A 32 432 38 HOH HOH . G 7 HOH A 33 433 48 HOH HOH . G 7 HOH A 34 434 17 HOH HOH . G 7 HOH A 35 435 111 HOH HOH . G 7 HOH A 36 436 135 HOH HOH . G 7 HOH A 37 437 35 HOH HOH . G 7 HOH A 38 438 1 HOH HOH . G 7 HOH A 39 439 82 HOH HOH . G 7 HOH A 40 440 110 HOH HOH . G 7 HOH A 41 441 121 HOH HOH . G 7 HOH A 42 442 109 HOH HOH . G 7 HOH A 43 443 133 HOH HOH . G 7 HOH A 44 444 53 HOH HOH . G 7 HOH A 45 445 93 HOH HOH . G 7 HOH A 46 446 42 HOH HOH . G 7 HOH A 47 447 74 HOH HOH . G 7 HOH A 48 448 102 HOH HOH . G 7 HOH A 49 449 134 HOH HOH . G 7 HOH A 50 450 21 HOH HOH . G 7 HOH A 51 451 19 HOH HOH . G 7 HOH A 52 452 118 HOH HOH . G 7 HOH A 53 453 54 HOH HOH . G 7 HOH A 54 454 125 HOH HOH . G 7 HOH A 55 455 46 HOH HOH . G 7 HOH A 56 456 63 HOH HOH . G 7 HOH A 57 457 47 HOH HOH . G 7 HOH A 58 458 94 HOH HOH . G 7 HOH A 59 459 117 HOH HOH . G 7 HOH A 60 460 33 HOH HOH . G 7 HOH A 61 461 132 HOH HOH . G 7 HOH A 62 462 90 HOH HOH . G 7 HOH A 63 463 136 HOH HOH . G 7 HOH A 64 464 59 HOH HOH . G 7 HOH A 65 465 115 HOH HOH . G 7 HOH A 66 466 64 HOH HOH . G 7 HOH A 67 467 119 HOH HOH . G 7 HOH A 68 468 116 HOH HOH . G 7 HOH A 69 469 126 HOH HOH . G 7 HOH A 70 470 137 HOH HOH . G 7 HOH A 71 471 85 HOH HOH . G 7 HOH A 72 472 99 HOH HOH . H 7 HOH B 1 401 31 HOH HOH . H 7 HOH B 2 402 71 HOH HOH . H 7 HOH B 3 403 112 HOH HOH . H 7 HOH B 4 404 41 HOH HOH . H 7 HOH B 5 405 15 HOH HOH . H 7 HOH B 6 406 40 HOH HOH . H 7 HOH B 7 407 49 HOH HOH . H 7 HOH B 8 408 114 HOH HOH . H 7 HOH B 9 409 83 HOH HOH . H 7 HOH B 10 410 62 HOH HOH . H 7 HOH B 11 411 130 HOH HOH . H 7 HOH B 12 412 34 HOH HOH . H 7 HOH B 13 413 97 HOH HOH . H 7 HOH B 14 414 26 HOH HOH . H 7 HOH B 15 415 105 HOH HOH . H 7 HOH B 16 416 52 HOH HOH . H 7 HOH B 17 417 25 HOH HOH . H 7 HOH B 18 418 66 HOH HOH . H 7 HOH B 19 419 5 HOH HOH . H 7 HOH B 20 420 39 HOH HOH . H 7 HOH B 21 421 84 HOH HOH . H 7 HOH B 22 422 79 HOH HOH . H 7 HOH B 23 423 14 HOH HOH . H 7 HOH B 24 424 65 HOH HOH . H 7 HOH B 25 425 108 HOH HOH . H 7 HOH B 26 426 43 HOH HOH . H 7 HOH B 27 427 101 HOH HOH . H 7 HOH B 28 428 122 HOH HOH . H 7 HOH B 29 429 88 HOH HOH . H 7 HOH B 30 430 67 HOH HOH . H 7 HOH B 31 431 91 HOH HOH . H 7 HOH B 32 432 78 HOH HOH . H 7 HOH B 33 433 89 HOH HOH . H 7 HOH B 34 434 70 HOH HOH . H 7 HOH B 35 435 22 HOH HOH . H 7 HOH B 36 436 56 HOH HOH . H 7 HOH B 37 437 3 HOH HOH . H 7 HOH B 38 438 45 HOH HOH . H 7 HOH B 39 439 32 HOH HOH . H 7 HOH B 40 440 60 HOH HOH . H 7 HOH B 41 441 51 HOH HOH . H 7 HOH B 42 442 10 HOH HOH . H 7 HOH B 43 443 131 HOH HOH . H 7 HOH B 44 444 24 HOH HOH . H 7 HOH B 45 445 9 HOH HOH . H 7 HOH B 46 446 124 HOH HOH . H 7 HOH B 47 447 96 HOH HOH . H 7 HOH B 48 448 113 HOH HOH . H 7 HOH B 49 449 29 HOH HOH . H 7 HOH B 50 450 81 HOH HOH . H 7 HOH B 51 451 100 HOH HOH . H 7 HOH B 52 452 107 HOH HOH . H 7 HOH B 53 453 68 HOH HOH . H 7 HOH B 54 454 76 HOH HOH . H 7 HOH B 55 455 75 HOH HOH . H 7 HOH B 56 456 98 HOH HOH . H 7 HOH B 57 457 73 HOH HOH . H 7 HOH B 58 458 127 HOH HOH . H 7 HOH B 59 459 129 HOH HOH . H 7 HOH B 60 460 69 HOH HOH . H 7 HOH B 61 461 86 HOH HOH . H 7 HOH B 62 462 104 HOH HOH . H 7 HOH B 63 463 138 HOH HOH . H 7 HOH B 64 464 123 HOH HOH . H 7 HOH B 65 465 128 HOH HOH . H 7 HOH B 66 466 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 5YD . . . D 4 21.16 -13.378 -26.279 1 29.15 ? C4 5YD 302 A 1 HETATM 2 C C14 5YD . . . D 4 16.633 -8.842 -28.21 1 35.58 ? C14 5YD 302 A 1 HETATM 3 C C6 5YD . . . D 4 22.098 -15.43 -25.728 1 32.59 ? C6 5YD 302 A 1 HETATM 4 C C11 5YD . . . D 4 19.23 -9.811 -27.982 1 31.67 ? C11 5YD 302 A 1 HETATM 5 C C7 5YD . . . D 4 22.552 -11.303 -26.699 1 34.24 ? C7 5YD 302 A 1 HETATM 6 C C9 5YD . . . D 4 20.597 -10.375 -27.956 1 34.56 ? C9 5YD 302 A 1 HETATM 7 C C12 5YD . . . D 4 18.479 -10.011 -29.156 1 31.07 ? C12 5YD 302 A 1 HETATM 8 C C13 5YD . . . D 4 17.195 -9.538 -29.269 1 31.62 ? C13 5YD 302 A 1 HETATM 9 C C3 5YD . . . D 4 22.421 -12.77 -26.358 1 32.25 ? C3 5YD 302 A 1 HETATM 10 C C1 5YD . . . D 4 23.394 -14.906 -25.799 1 32.4 ? C1 5YD 302 A 1 HETATM 11 C C2 5YD . . . D 4 23.564 -13.544 -26.107 1 32.38 ? C2 5YD 302 A 1 HETATM 12 N N5 5YD . . . D 4 21.03 -14.662 -25.966 1 29.73 ? N5 5YD 302 A 1 HETATM 13 N N8 5YD . . . D 4 21.207 -10.689 -26.786 1 35.1 ? N8 5YD 302 A 1 HETATM 14 O O10 5YD . . . D 4 21.158 -10.581 -29.024 1 37.55 ? O10 5YD 302 A 1 HETATM 15 C C15 5YD . . . D 4 17.358 -8.618 -27.026 1 35.45 ? C15 5YD 302 A 1 HETATM 16 C C16 5YD . . . D 4 18.665 -9.106 -26.902 1 33.13 ? C16 5YD 302 A 1 HETATM 17 C C17 5YD . . . D 4 15.219 -8.353 -28.406 1 38.6 ? C17 5YD 302 A 1 HETATM 18 N N18 5YD . . . D 4 14.278 -8.863 -27.414 1 40.92 ? N18 5YD 302 A 1 HETATM 19 S S19 5YD . . . D 4 13.719 -10.427 -27.344 1 42.91 ? S19 5YD 302 A 1 HETATM 20 O O20 5YD . . . D 4 13.228 -10.464 -26.018 1 47.01 ? O20 5YD 302 A 1 HETATM 21 O O21 5YD . . . D 4 12.913 -10.646 -28.482 1 41.15 ? O21 5YD 302 A 1 HETATM 22 C C22 5YD . . . D 4 15.092 -11.545 -27.361 1 39.99 ? C22 5YD 302 A 1 HETATM 23 C C23 5YD . . . D 4 15.273 -12.44 -28.418 1 39.13 ? C23 5YD 302 A 1 HETATM 24 C C24 5YD . . . D 4 16.392 -13.26 -28.446 1 38.73 ? C24 5YD 302 A 1 HETATM 25 C C25 5YD . . . D 4 17.322 -13.17 -27.406 1 39.47 ? C25 5YD 302 A 1 HETATM 26 C C26 5YD . . . D 4 17.16 -12.282 -26.35 1 36.14 ? C26 5YD 302 A 1 HETATM 27 C C27 5YD . . . D 4 16.023 -11.49 -26.322 1 36.46 ? C27 5YD 302 A 1 HETATM 28 F F28 5YD . . . D 4 18.394 -13.968 -27.417 1 43.49 ? F28 5YD 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #