data_5H8X # _model_server_result.job_id eszld5mbdmm0SzAHNdGuyQ _model_server_result.datetime_utc '2024-11-15 06:58:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5H8X # _exptl.entry_id 5H8X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H8X _cell.length_a 32.91 _cell.length_b 68.46 _cell.length_c 68.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H8X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 58 A ASP 137 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc2 A NE2 HIS 68 A HIS 147 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc3 A OD2 ASP 70 A ASP 149 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc4 A OD1 ASP 75 A ASP 154 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc5 A O GLY 76 A GLY 155 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc6 A O ASN 78 A ASN 157 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc7 A O ILE 80 A ILE 159 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc8 A NE2 HIS 83 A HIS 162 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc9 A O GLY 90 A GLY 169 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc10 A O GLY 92 A GLY 171 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc11 A OD1 ASP 94 A ASP 173 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc12 A ND1 HIS 96 A HIS 175 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc13 A OD2 ASP 98 A ASP 177 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc14 A OE2 GLU 101 A GLU 180 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc15 A NE2 HIS 118 A HIS 197 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc16 A NE2 HIS 122 A HIS 201 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc17 A NE2 HIS 128 A HIS 207 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc18 B CA CA . A CA 301 1_555 I O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc19 B CA CA . A CA 301 1_555 I O HOH . A HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc20 E ZN ZN . A ZN 304 1_555 G OAD 7FY . A 7FY 306 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.843 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5H8X _atom_sites.fract_transf_matrix[1][1] 0.030386 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 996 CA CA . C 2 CA A 1 302 997 CA CA . D 3 ZN A 1 303 998 ZN ZN . E 3 ZN A 1 304 999 ZN ZN . F 4 5XT A 1 305 1 5XT WHX . G 5 7FY A 1 306 1 7FY WHH . H 6 MES A 1 307 250 MES MES . I 7 HOH A 1 401 29 HOH HOH . I 7 HOH A 2 402 3 HOH HOH . I 7 HOH A 3 403 77 HOH HOH . I 7 HOH A 4 404 111 HOH HOH . I 7 HOH A 5 405 151 HOH HOH . I 7 HOH A 6 406 154 HOH HOH . I 7 HOH A 7 407 70 HOH HOH . I 7 HOH A 8 408 145 HOH HOH . I 7 HOH A 9 409 133 HOH HOH . I 7 HOH A 10 410 165 HOH HOH . I 7 HOH A 11 411 32 HOH HOH . I 7 HOH A 12 412 161 HOH HOH . I 7 HOH A 13 413 44 HOH HOH . I 7 HOH A 14 414 166 HOH HOH . I 7 HOH A 15 415 122 HOH HOH . I 7 HOH A 16 416 16 HOH HOH . I 7 HOH A 17 417 115 HOH HOH . I 7 HOH A 18 418 18 HOH HOH . I 7 HOH A 19 419 116 HOH HOH . I 7 HOH A 20 420 152 HOH HOH . I 7 HOH A 21 421 4 HOH HOH . I 7 HOH A 22 422 99 HOH HOH . I 7 HOH A 23 423 13 HOH HOH . I 7 HOH A 24 424 137 HOH HOH . I 7 HOH A 25 425 37 HOH HOH . I 7 HOH A 26 426 113 HOH HOH . I 7 HOH A 27 427 83 HOH HOH . I 7 HOH A 28 428 164 HOH HOH . I 7 HOH A 29 429 103 HOH HOH . I 7 HOH A 30 430 50 HOH HOH . I 7 HOH A 31 431 98 HOH HOH . I 7 HOH A 32 432 14 HOH HOH . I 7 HOH A 33 433 74 HOH HOH . I 7 HOH A 34 434 5 HOH HOH . I 7 HOH A 35 435 39 HOH HOH . I 7 HOH A 36 436 12 HOH HOH . I 7 HOH A 37 437 60 HOH HOH . I 7 HOH A 38 438 49 HOH HOH . I 7 HOH A 39 439 121 HOH HOH . I 7 HOH A 40 440 84 HOH HOH . I 7 HOH A 41 441 81 HOH HOH . I 7 HOH A 42 442 46 HOH HOH . I 7 HOH A 43 443 65 HOH HOH . I 7 HOH A 44 444 34 HOH HOH . I 7 HOH A 45 445 21 HOH HOH . I 7 HOH A 46 446 25 HOH HOH . I 7 HOH A 47 447 11 HOH HOH . I 7 HOH A 48 448 54 HOH HOH . I 7 HOH A 49 449 129 HOH HOH . I 7 HOH A 50 450 15 HOH HOH . I 7 HOH A 51 451 89 HOH HOH . I 7 HOH A 52 452 127 HOH HOH . I 7 HOH A 53 453 51 HOH HOH . I 7 HOH A 54 454 131 HOH HOH . I 7 HOH A 55 455 102 HOH HOH . I 7 HOH A 56 456 17 HOH HOH . I 7 HOH A 57 457 40 HOH HOH . I 7 HOH A 58 458 62 HOH HOH . I 7 HOH A 59 459 45 HOH HOH . I 7 HOH A 60 460 157 HOH HOH . I 7 HOH A 61 461 2 HOH HOH . I 7 HOH A 62 462 119 HOH HOH . I 7 HOH A 63 463 47 HOH HOH . I 7 HOH A 64 464 8 HOH HOH . I 7 HOH A 65 465 48 HOH HOH . I 7 HOH A 66 466 79 HOH HOH . I 7 HOH A 67 467 55 HOH HOH . I 7 HOH A 68 468 105 HOH HOH . I 7 HOH A 69 469 91 HOH HOH . I 7 HOH A 70 470 156 HOH HOH . I 7 HOH A 71 471 128 HOH HOH . I 7 HOH A 72 472 136 HOH HOH . I 7 HOH A 73 473 106 HOH HOH . I 7 HOH A 74 474 20 HOH HOH . I 7 HOH A 75 475 163 HOH HOH . I 7 HOH A 76 476 108 HOH HOH . I 7 HOH A 77 477 30 HOH HOH . I 7 HOH A 78 478 7 HOH HOH . I 7 HOH A 79 479 9 HOH HOH . I 7 HOH A 80 480 78 HOH HOH . I 7 HOH A 81 481 59 HOH HOH . I 7 HOH A 82 482 61 HOH HOH . I 7 HOH A 83 483 82 HOH HOH . I 7 HOH A 84 484 155 HOH HOH . I 7 HOH A 85 485 38 HOH HOH . I 7 HOH A 86 486 63 HOH HOH . I 7 HOH A 87 487 80 HOH HOH . I 7 HOH A 88 488 68 HOH HOH . I 7 HOH A 89 489 6 HOH HOH . I 7 HOH A 90 490 52 HOH HOH . I 7 HOH A 91 491 125 HOH HOH . I 7 HOH A 92 492 97 HOH HOH . I 7 HOH A 93 493 141 HOH HOH . I 7 HOH A 94 494 35 HOH HOH . I 7 HOH A 95 495 138 HOH HOH . I 7 HOH A 96 496 28 HOH HOH . I 7 HOH A 97 497 26 HOH HOH . I 7 HOH A 98 498 69 HOH HOH . I 7 HOH A 99 499 43 HOH HOH . I 7 HOH A 100 500 33 HOH HOH . I 7 HOH A 101 501 10 HOH HOH . I 7 HOH A 102 502 75 HOH HOH . I 7 HOH A 103 503 58 HOH HOH . I 7 HOH A 104 504 73 HOH HOH . I 7 HOH A 105 505 76 HOH HOH . I 7 HOH A 106 506 95 HOH HOH . I 7 HOH A 107 507 150 HOH HOH . I 7 HOH A 108 508 31 HOH HOH . I 7 HOH A 109 509 64 HOH HOH . I 7 HOH A 110 510 107 HOH HOH . I 7 HOH A 111 511 41 HOH HOH . I 7 HOH A 112 512 142 HOH HOH . I 7 HOH A 113 513 23 HOH HOH . I 7 HOH A 114 514 153 HOH HOH . I 7 HOH A 115 515 96 HOH HOH . I 7 HOH A 116 516 139 HOH HOH . I 7 HOH A 117 517 124 HOH HOH . I 7 HOH A 118 518 146 HOH HOH . I 7 HOH A 119 519 100 HOH HOH . I 7 HOH A 120 520 72 HOH HOH . I 7 HOH A 121 521 144 HOH HOH . I 7 HOH A 122 522 24 HOH HOH . I 7 HOH A 123 523 123 HOH HOH . I 7 HOH A 124 524 87 HOH HOH . I 7 HOH A 125 525 56 HOH HOH . I 7 HOH A 126 526 132 HOH HOH . I 7 HOH A 127 527 92 HOH HOH . I 7 HOH A 128 528 66 HOH HOH . I 7 HOH A 129 529 36 HOH HOH . I 7 HOH A 130 530 147 HOH HOH . I 7 HOH A 131 531 94 HOH HOH . I 7 HOH A 132 532 19 HOH HOH . I 7 HOH A 133 533 135 HOH HOH . I 7 HOH A 134 534 149 HOH HOH . I 7 HOH A 135 535 140 HOH HOH . I 7 HOH A 136 536 167 HOH HOH . I 7 HOH A 137 537 90 HOH HOH . I 7 HOH A 138 538 160 HOH HOH . I 7 HOH A 139 539 93 HOH HOH . I 7 HOH A 140 540 67 HOH HOH . I 7 HOH A 141 541 57 HOH HOH . I 7 HOH A 142 542 42 HOH HOH . I 7 HOH A 143 543 104 HOH HOH . I 7 HOH A 144 544 53 HOH HOH . I 7 HOH A 145 545 117 HOH HOH . I 7 HOH A 146 546 85 HOH HOH . I 7 HOH A 147 547 148 HOH HOH . I 7 HOH A 148 548 71 HOH HOH . I 7 HOH A 149 549 118 HOH HOH . I 7 HOH A 150 550 110 HOH HOH . I 7 HOH A 151 551 158 HOH HOH . I 7 HOH A 152 552 86 HOH HOH . I 7 HOH A 153 553 109 HOH HOH . I 7 HOH A 154 554 101 HOH HOH . I 7 HOH A 155 555 114 HOH HOH . I 7 HOH A 156 556 130 HOH HOH . I 7 HOH A 157 557 159 HOH HOH . I 7 HOH A 158 558 22 HOH HOH . I 7 HOH A 159 559 120 HOH HOH . I 7 HOH A 160 560 88 HOH HOH . I 7 HOH A 161 561 112 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.005 _atom_site.Cartn_y -2.877 _atom_site.Cartn_z 11.746 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.22 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 601 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #