data_5H9I # _model_server_result.job_id hHPDPD_ieLx3QArjR2oS3A _model_server_result.datetime_utc '2024-11-24 01:13:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h9i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5H9I # _exptl.entry_id 5H9I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.4 _cell.angle_gamma 90 _cell.entry_id 5H9I _cell.length_a 92.972 _cell.length_b 64.339 _cell.length_c 45.654 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 5H9I _atom_sites.fract_transf_matrix[1][1] 0.010756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004215 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015543 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XAN A 1 301 2 XAN XAN . C 3 GOL A 1 302 1 GOL GOL . D 3 GOL A 1 303 2 GOL GOL . E 3 GOL A 1 304 5 GOL GOL . F 4 BME A 1 305 2 BME BME . G 5 IPA A 1 306 1 IPA IPA . H 6 LEA A 1 307 1 LEA LEA . I 7 HOH A 1 401 112 HOH HOH . I 7 HOH A 2 402 117 HOH HOH . I 7 HOH A 3 403 32 HOH HOH . I 7 HOH A 4 404 161 HOH HOH . I 7 HOH A 5 405 83 HOH HOH . I 7 HOH A 6 406 137 HOH HOH . I 7 HOH A 7 407 190 HOH HOH . I 7 HOH A 8 408 144 HOH HOH . I 7 HOH A 9 409 21 HOH HOH . I 7 HOH A 10 410 98 HOH HOH . I 7 HOH A 11 411 49 HOH HOH . I 7 HOH A 12 412 2 HOH HOH . I 7 HOH A 13 413 140 HOH HOH . I 7 HOH A 14 414 145 HOH HOH . I 7 HOH A 15 415 129 HOH HOH . I 7 HOH A 16 416 147 HOH HOH . I 7 HOH A 17 417 59 HOH HOH . I 7 HOH A 18 418 29 HOH HOH . I 7 HOH A 19 419 199 HOH HOH . I 7 HOH A 20 420 10 HOH HOH . I 7 HOH A 21 421 86 HOH HOH . I 7 HOH A 22 422 46 HOH HOH . I 7 HOH A 23 423 61 HOH HOH . I 7 HOH A 24 424 139 HOH HOH . I 7 HOH A 25 425 4 HOH HOH . I 7 HOH A 26 426 206 HOH HOH . I 7 HOH A 27 427 191 HOH HOH . I 7 HOH A 28 428 3 HOH HOH . I 7 HOH A 29 429 82 HOH HOH . I 7 HOH A 30 430 213 HOH HOH . I 7 HOH A 31 431 87 HOH HOH . I 7 HOH A 32 432 23 HOH HOH . I 7 HOH A 33 433 39 HOH HOH . I 7 HOH A 34 434 71 HOH HOH . I 7 HOH A 35 435 162 HOH HOH . I 7 HOH A 36 436 18 HOH HOH . I 7 HOH A 37 437 149 HOH HOH . I 7 HOH A 38 438 5 HOH HOH . I 7 HOH A 39 439 134 HOH HOH . I 7 HOH A 40 440 17 HOH HOH . I 7 HOH A 41 441 159 HOH HOH . I 7 HOH A 42 442 126 HOH HOH . I 7 HOH A 43 443 26 HOH HOH . I 7 HOH A 44 444 31 HOH HOH . I 7 HOH A 45 445 77 HOH HOH . I 7 HOH A 46 446 7 HOH HOH . I 7 HOH A 47 447 57 HOH HOH . I 7 HOH A 48 448 157 HOH HOH . I 7 HOH A 49 449 91 HOH HOH . I 7 HOH A 50 450 20 HOH HOH . I 7 HOH A 51 451 78 HOH HOH . I 7 HOH A 52 452 48 HOH HOH . I 7 HOH A 53 453 118 HOH HOH . I 7 HOH A 54 454 97 HOH HOH . I 7 HOH A 55 455 200 HOH HOH . I 7 HOH A 56 456 9 HOH HOH . I 7 HOH A 57 457 45 HOH HOH . I 7 HOH A 58 458 12 HOH HOH . I 7 HOH A 59 459 27 HOH HOH . I 7 HOH A 60 460 138 HOH HOH . I 7 HOH A 61 461 188 HOH HOH . I 7 HOH A 62 462 104 HOH HOH . I 7 HOH A 63 463 25 HOH HOH . I 7 HOH A 64 464 114 HOH HOH . I 7 HOH A 65 465 19 HOH HOH . I 7 HOH A 66 466 88 HOH HOH . I 7 HOH A 67 467 15 HOH HOH . I 7 HOH A 68 468 74 HOH HOH . I 7 HOH A 69 469 33 HOH HOH . I 7 HOH A 70 470 90 HOH HOH . I 7 HOH A 71 471 37 HOH HOH . I 7 HOH A 72 472 154 HOH HOH . I 7 HOH A 73 473 72 HOH HOH . I 7 HOH A 74 474 22 HOH HOH . I 7 HOH A 75 475 43 HOH HOH . I 7 HOH A 76 476 196 HOH HOH . I 7 HOH A 77 477 101 HOH HOH . I 7 HOH A 78 478 13 HOH HOH . I 7 HOH A 79 479 110 HOH HOH . I 7 HOH A 80 480 120 HOH HOH . I 7 HOH A 81 481 41 HOH HOH . I 7 HOH A 82 482 93 HOH HOH . I 7 HOH A 83 483 73 HOH HOH . I 7 HOH A 84 484 89 HOH HOH . I 7 HOH A 85 485 207 HOH HOH . I 7 HOH A 86 486 113 HOH HOH . I 7 HOH A 87 487 42 HOH HOH . I 7 HOH A 88 488 211 HOH HOH . I 7 HOH A 89 489 44 HOH HOH . I 7 HOH A 90 490 100 HOH HOH . I 7 HOH A 91 491 28 HOH HOH . I 7 HOH A 92 492 153 HOH HOH . I 7 HOH A 93 493 79 HOH HOH . I 7 HOH A 94 494 105 HOH HOH . I 7 HOH A 95 495 58 HOH HOH . I 7 HOH A 96 496 197 HOH HOH . I 7 HOH A 97 497 11 HOH HOH . I 7 HOH A 98 498 67 HOH HOH . I 7 HOH A 99 499 136 HOH HOH . I 7 HOH A 100 500 24 HOH HOH . I 7 HOH A 101 501 111 HOH HOH . I 7 HOH A 102 502 36 HOH HOH . I 7 HOH A 103 503 209 HOH HOH . I 7 HOH A 104 504 76 HOH HOH . I 7 HOH A 105 505 92 HOH HOH . I 7 HOH A 106 506 156 HOH HOH . I 7 HOH A 107 507 70 HOH HOH . I 7 HOH A 108 508 54 HOH HOH . I 7 HOH A 109 509 1 HOH HOH . I 7 HOH A 110 510 170 HOH HOH . I 7 HOH A 111 511 107 HOH HOH . I 7 HOH A 112 512 56 HOH HOH . I 7 HOH A 113 513 35 HOH HOH . I 7 HOH A 114 514 95 HOH HOH . I 7 HOH A 115 515 14 HOH HOH . I 7 HOH A 116 516 52 HOH HOH . I 7 HOH A 117 517 163 HOH HOH . I 7 HOH A 118 518 34 HOH HOH . I 7 HOH A 119 519 141 HOH HOH . I 7 HOH A 120 520 167 HOH HOH . I 7 HOH A 121 521 6 HOH HOH . I 7 HOH A 122 522 75 HOH HOH . I 7 HOH A 123 523 38 HOH HOH . I 7 HOH A 124 524 47 HOH HOH . I 7 HOH A 125 525 124 HOH HOH . I 7 HOH A 126 526 80 HOH HOH . I 7 HOH A 127 527 143 HOH HOH . I 7 HOH A 128 528 203 HOH HOH . I 7 HOH A 129 529 119 HOH HOH . I 7 HOH A 130 530 50 HOH HOH . I 7 HOH A 131 531 69 HOH HOH . I 7 HOH A 132 532 125 HOH HOH . I 7 HOH A 133 533 177 HOH HOH . I 7 HOH A 134 534 212 HOH HOH . I 7 HOH A 135 535 122 HOH HOH . I 7 HOH A 136 536 151 HOH HOH . I 7 HOH A 137 537 142 HOH HOH . I 7 HOH A 138 538 40 HOH HOH . I 7 HOH A 139 539 84 HOH HOH . I 7 HOH A 140 540 193 HOH HOH . I 7 HOH A 141 541 164 HOH HOH . I 7 HOH A 142 542 150 HOH HOH . I 7 HOH A 143 543 96 HOH HOH . I 7 HOH A 144 544 106 HOH HOH . I 7 HOH A 145 545 194 HOH HOH . I 7 HOH A 146 546 109 HOH HOH . I 7 HOH A 147 547 201 HOH HOH . I 7 HOH A 148 548 181 HOH HOH . I 7 HOH A 149 549 208 HOH HOH . I 7 HOH A 150 550 152 HOH HOH . I 7 HOH A 151 551 168 HOH HOH . I 7 HOH A 152 552 148 HOH HOH . I 7 HOH A 153 553 195 HOH HOH . I 7 HOH A 154 554 108 HOH HOH . I 7 HOH A 155 555 214 HOH HOH . I 7 HOH A 156 556 81 HOH HOH . I 7 HOH A 157 557 155 HOH HOH . I 7 HOH A 158 558 179 HOH HOH . I 7 HOH A 159 559 189 HOH HOH . I 7 HOH A 160 560 210 HOH HOH . I 7 HOH A 161 561 103 HOH HOH . I 7 HOH A 162 562 160 HOH HOH . I 7 HOH A 163 563 174 HOH HOH . I 7 HOH A 164 564 115 HOH HOH . I 7 HOH A 165 565 192 HOH HOH . I 7 HOH A 166 566 158 HOH HOH . I 7 HOH A 167 567 127 HOH HOH . I 7 HOH A 168 568 99 HOH HOH . I 7 HOH A 169 569 128 HOH HOH . I 7 HOH A 170 570 186 HOH HOH . I 7 HOH A 171 571 53 HOH HOH . I 7 HOH A 172 572 176 HOH HOH . I 7 HOH A 173 573 16 HOH HOH . I 7 HOH A 174 574 198 HOH HOH . I 7 HOH A 175 575 205 HOH HOH . I 7 HOH A 176 576 60 HOH HOH . I 7 HOH A 177 577 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 99.206 -5.955 -2.317 1 19.74 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 3 98.143 -6.891 -2.221 1 21.96 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 3 99.583 -5.806 -3.803 1 19.16 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 3 98.389 -5.344 -4.514 1 17.73 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 3 100.748 -4.808 -3.971 1 19.38 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 3 101.955 -5.329 -3.254 1 21.69 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #