data_5H9P # _model_server_result.job_id RC4Mw_24kbsQJ8KKTbyG4A _model_server_result.datetime_utc '2025-01-11 02:49:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5H9P # _exptl.entry_id 5H9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 648.635 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranosyl 3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-1-thio-beta-D-galactopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H9P _cell.length_a 37.168 _cell.length_b 57.145 _cell.length_c 63.651 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H30 F2 N6 O8 S' _chem_comp.formula_weight 648.635 _chem_comp.id TD2 _chem_comp.mon_nstd_flag . _chem_comp.name '3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranosyl 3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-1-thio-beta-D-galactopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O61 C61 TD2 sing 290 n n C61 C51 TD2 sing 291 n n C51 O51 TD2 sing 292 n n C51 C41 TD2 sing 293 n n O51 C11 TD2 sing 294 n n O6 C6 TD2 sing 295 n n C5 C6 TD2 sing 296 n n C5 O5 TD2 sing 297 n n C5 C4 TD2 sing 298 n n C41 O41 TD2 sing 299 n n C41 C31 TD2 sing 300 n n O5 C1 TD2 sing 301 n n C4 C3 TD2 sing 302 n n C4 O4 TD2 sing 303 n n C1 C2 TD2 sing 304 n n C1 S1 TD2 sing 305 n n C3 C2 TD2 sing 306 n n C3 N71 TD2 sing 307 n n N8 N71 TD2 sing 308 n y N8 N9 TD2 doub 309 n y C11 S1 TD2 sing 310 n n C11 C21 TD2 sing 311 n n O21 C2 TD2 sing 312 n n C31 C21 TD2 sing 313 n n C31 N7 TD2 sing 314 n n N71 C71 TD2 sing 315 n y N9 C10 TD2 sing 316 n y C21 O2 TD2 sing 317 n n N11 N7 TD2 sing 318 n y N11 N10 TD2 doub 319 n y N7 C8 TD2 sing 320 n y C71 C10 TD2 doub 321 n y N10 C9 TD2 sing 322 n y C10 C22 TD2 sing 323 n n C8 C9 TD2 doub 324 n y C9 C12 TD2 sing 325 n n C23 C22 TD2 doub 326 n y C23 C24 TD2 sing 327 n y C22 C27 TD2 sing 328 n y C24 C25 TD2 doub 329 n y C12 C13 TD2 doub 330 n y C12 C17 TD2 sing 331 n y C27 C26 TD2 doub 332 n y C13 C14 TD2 sing 333 n y C17 C16 TD2 doub 334 n y C25 C26 TD2 sing 335 n y C26 F28 TD2 sing 336 n n C14 F18 TD2 sing 337 n n C14 C15 TD2 doub 338 n y C16 C15 TD2 sing 339 n y C1 H1 TD2 sing 340 n n C2 H2 TD2 sing 341 n n C3 H3 TD2 sing 342 n n C4 H4 TD2 sing 343 n n C5 H5 TD2 sing 344 n n C6 H6 TD2 sing 345 n n C6 H7 TD2 sing 346 n n C13 H8 TD2 sing 347 n n C11 H9 TD2 sing 348 n n C51 H10 TD2 sing 349 n n C61 H11 TD2 sing 350 n n C61 H12 TD2 sing 351 n n O6 H13 TD2 sing 352 n n O61 H14 TD2 sing 353 n n C41 H15 TD2 sing 354 n n O4 H16 TD2 sing 355 n n O41 H17 TD2 sing 356 n n C31 H18 TD2 sing 357 n n C21 H19 TD2 sing 358 n n O2 H20 TD2 sing 359 n n O21 H21 TD2 sing 360 n n C8 H22 TD2 sing 361 n n C71 H23 TD2 sing 362 n n C15 H24 TD2 sing 363 n n C16 H25 TD2 sing 364 n n C17 H26 TD2 sing 365 n n C23 H27 TD2 sing 366 n n C24 H28 TD2 sing 367 n n C25 H29 TD2 sing 368 n n C27 H30 TD2 sing 369 n n # _atom_sites.entry_id 5H9P _atom_sites.fract_transf_matrix[1][1] 0.026905 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017499 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TD2 A 1 301 1 TD2 TD1 . C 3 HOH A 1 401 59 HOH HOH . C 3 HOH A 2 402 58 HOH HOH . C 3 HOH A 3 403 76 HOH HOH . C 3 HOH A 4 404 66 HOH HOH . C 3 HOH A 5 405 7 HOH HOH . C 3 HOH A 6 406 21 HOH HOH . C 3 HOH A 7 407 39 HOH HOH . C 3 HOH A 8 408 56 HOH HOH . C 3 HOH A 9 409 61 HOH HOH . C 3 HOH A 10 410 30 HOH HOH . C 3 HOH A 11 411 3 HOH HOH . C 3 HOH A 12 412 75 HOH HOH . C 3 HOH A 13 413 13 HOH HOH . C 3 HOH A 14 414 42 HOH HOH . C 3 HOH A 15 415 26 HOH HOH . C 3 HOH A 16 416 8 HOH HOH . C 3 HOH A 17 417 55 HOH HOH . C 3 HOH A 18 418 2 HOH HOH . C 3 HOH A 19 419 36 HOH HOH . C 3 HOH A 20 420 20 HOH HOH . C 3 HOH A 21 421 10 HOH HOH . C 3 HOH A 22 422 45 HOH HOH . C 3 HOH A 23 423 1 HOH HOH . C 3 HOH A 24 424 5 HOH HOH . C 3 HOH A 25 425 6 HOH HOH . C 3 HOH A 26 426 65 HOH HOH . C 3 HOH A 27 427 28 HOH HOH . C 3 HOH A 28 428 63 HOH HOH . C 3 HOH A 29 429 16 HOH HOH . C 3 HOH A 30 430 38 HOH HOH . C 3 HOH A 31 431 22 HOH HOH . C 3 HOH A 32 432 41 HOH HOH . C 3 HOH A 33 433 62 HOH HOH . C 3 HOH A 34 434 4 HOH HOH . C 3 HOH A 35 435 47 HOH HOH . C 3 HOH A 36 436 34 HOH HOH . C 3 HOH A 37 437 53 HOH HOH . C 3 HOH A 38 438 43 HOH HOH . C 3 HOH A 39 439 12 HOH HOH . C 3 HOH A 40 440 14 HOH HOH . C 3 HOH A 41 441 9 HOH HOH . C 3 HOH A 42 442 60 HOH HOH . C 3 HOH A 43 443 35 HOH HOH . C 3 HOH A 44 444 31 HOH HOH . C 3 HOH A 45 445 78 HOH HOH . C 3 HOH A 46 446 68 HOH HOH . C 3 HOH A 47 447 81 HOH HOH . C 3 HOH A 48 448 33 HOH HOH . C 3 HOH A 49 449 44 HOH HOH . C 3 HOH A 50 450 67 HOH HOH . C 3 HOH A 51 451 49 HOH HOH . C 3 HOH A 52 452 29 HOH HOH . C 3 HOH A 53 453 19 HOH HOH . C 3 HOH A 54 454 77 HOH HOH . C 3 HOH A 55 455 40 HOH HOH . C 3 HOH A 56 456 57 HOH HOH . C 3 HOH A 57 457 23 HOH HOH . C 3 HOH A 58 458 51 HOH HOH . C 3 HOH A 59 459 64 HOH HOH . C 3 HOH A 60 460 24 HOH HOH . C 3 HOH A 61 461 79 HOH HOH . C 3 HOH A 62 462 71 HOH HOH . C 3 HOH A 63 463 50 HOH HOH . C 3 HOH A 64 464 18 HOH HOH . C 3 HOH A 65 465 17 HOH HOH . C 3 HOH A 66 466 54 HOH HOH . C 3 HOH A 67 467 11 HOH HOH . C 3 HOH A 68 468 32 HOH HOH . C 3 HOH A 69 469 70 HOH HOH . C 3 HOH A 70 470 15 HOH HOH . C 3 HOH A 71 471 84 HOH HOH . C 3 HOH A 72 472 83 HOH HOH . C 3 HOH A 73 473 27 HOH HOH . C 3 HOH A 74 474 46 HOH HOH . C 3 HOH A 75 475 72 HOH HOH . C 3 HOH A 76 476 25 HOH HOH . C 3 HOH A 77 477 52 HOH HOH . C 3 HOH A 78 478 73 HOH HOH . C 3 HOH A 79 479 37 HOH HOH . C 3 HOH A 80 480 69 HOH HOH . C 3 HOH A 81 481 82 HOH HOH . C 3 HOH A 82 482 74 HOH HOH . C 3 HOH A 83 483 80 HOH HOH . C 3 HOH A 84 484 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TD2 . . . B 2 -20.211 9.08 -1.185 1 33.94 ? C1 TD2 301 A 1 HETATM 2 C C2 TD2 . . . B 2 -18.724 9.283 -0.969 1 34.02 ? C2 TD2 301 A 1 HETATM 3 C C3 TD2 . . . B 2 -17.96 8.044 -1.204 1 30.75 ? C3 TD2 301 A 1 HETATM 4 C C4 TD2 . . . B 2 -18.45 6.861 -0.477 1 26.33 ? C4 TD2 301 A 1 HETATM 5 C C5 TD2 . . . B 2 -19.929 6.646 -0.72 1 33.3 ? C5 TD2 301 A 1 HETATM 6 C C6 TD2 . . . B 2 -20.476 5.571 0.118 1 24.73 ? C6 TD2 301 A 1 HETATM 7 N N9 TD2 . . . B 2 -14.42 8.319 -1.747 1 38.08 ? N9 TD2 301 A 1 HETATM 8 C C12 TD2 . . . B 2 -28.373 8.684 3.696 1 59.28 ? C12 TD2 301 A 1 HETATM 9 C C13 TD2 . . . B 2 -28.934 9.335 4.761 1 57.07 ? C13 TD2 301 A 1 HETATM 10 C C14 TD2 . . . B 2 -29.782 8.63 5.648 1 68.94 ? C14 TD2 301 A 1 HETATM 11 C C11 TD2 . . . B 2 -22.812 9.956 -0.83 1 31.31 ? C11 TD2 301 A 1 HETATM 12 S S1 TD2 . . . B 2 -21.135 10.399 -0.491 1 37.6 ? S1 TD2 301 A 1 HETATM 13 O O5 TD2 . . . B 2 -20.753 7.855 -0.567 1 32.42 ? O5 TD2 301 A 1 HETATM 14 O O51 TD2 . . . B 2 -23.286 10.574 -2.101 1 34.16 ? O51 TD2 301 A 1 HETATM 15 C C51 TD2 . . . B 2 -24.66 10.143 -2.418 1 40.96 ? C51 TD2 301 A 1 HETATM 16 C C61 TD2 . . . B 2 -25.14 10.887 -3.627 1 46.46 ? C61 TD2 301 A 1 HETATM 17 O O6 TD2 . . . B 2 -21.756 5.322 -0.334 1 24.37 ? O6 TD2 301 A 1 HETATM 18 O O61 TD2 . . . B 2 -24.305 10.526 -4.689 1 56.65 ? O61 TD2 301 A 1 HETATM 19 C C41 TD2 . . . B 2 -25.611 10.342 -1.265 1 41.1 ? C41 TD2 301 A 1 HETATM 20 O O4 TD2 . . . B 2 -18.236 7.025 0.916 1 22.47 ? O4 TD2 301 A 1 HETATM 21 O O41 TD2 . . . B 2 -25.914 11.77 -1.086 1 45.02 ? O41 TD2 301 A 1 HETATM 22 C C31 TD2 . . . B 2 -25.078 9.751 -0.016 1 41.6 ? C31 TD2 301 A 1 HETATM 23 C C21 TD2 . . . B 2 -23.716 10.25 0.314 1 38.47 ? C21 TD2 301 A 1 HETATM 24 O O2 TD2 . . . B 2 -23.211 9.592 1.523 1 28.9 ? O2 TD2 301 A 1 HETATM 25 O O21 TD2 . . . B 2 -18.218 10.335 -1.779 1 32.79 ? O21 TD2 301 A 1 HETATM 26 N N7 TD2 . . . B 2 -26.009 9.9 1.135 1 45.03 ? N7 TD2 301 A 1 HETATM 27 C C8 TD2 . . . B 2 -26.707 8.857 1.704 1 46.67 ? C8 TD2 301 A 1 HETATM 28 C C9 TD2 . . . B 2 -27.448 9.43 2.748 1 51.02 ? C9 TD2 301 A 1 HETATM 29 N N10 TD2 . . . B 2 -27.141 10.764 2.746 1 46.57 ? N10 TD2 301 A 1 HETATM 30 N N11 TD2 . . . B 2 -26.284 10.993 1.768 1 46.61 ? N11 TD2 301 A 1 HETATM 31 N N71 TD2 . . . B 2 -16.504 8.226 -1.096 1 31.57 ? N71 TD2 301 A 1 HETATM 32 N N8 TD2 . . . B 2 -15.646 8.118 -2.137 1 36.49 ? N8 TD2 301 A 1 HETATM 33 C C10 TD2 . . . B 2 -14.423 8.571 -0.411 1 38.14 ? C10 TD2 301 A 1 HETATM 34 C C71 TD2 . . . B 2 -15.82 8.499 0.014 1 33.4 ? C71 TD2 301 A 1 HETATM 35 C C15 TD2 . . . B 2 -30.044 7.239 5.435 1 70.02 ? C15 TD2 301 A 1 HETATM 36 C C16 TD2 . . . B 2 -29.483 6.594 4.387 1 63.11 ? C16 TD2 301 A 1 HETATM 37 C C17 TD2 . . . B 2 -28.626 7.308 3.488 1 54.07 ? C17 TD2 301 A 1 HETATM 38 C C22 TD2 . . . B 2 -13.201 8.85 0.436 1 40.1 ? C22 TD2 301 A 1 HETATM 39 C C23 TD2 . . . B 2 -12.015 9.292 -0.196 1 45.95 ? C23 TD2 301 A 1 HETATM 40 C C24 TD2 . . . B 2 -10.862 9.548 0.567 1 44.33 ? C24 TD2 301 A 1 HETATM 41 C C25 TD2 . . . B 2 -10.893 9.364 1.932 1 32.41 ? C25 TD2 301 A 1 HETATM 42 C C26 TD2 . . . B 2 -12.057 8.929 2.554 1 28.66 ? C26 TD2 301 A 1 HETATM 43 C C27 TD2 . . . B 2 -13.23 8.666 1.779 1 26.89 ? C27 TD2 301 A 1 HETATM 44 F F18 TD2 . . . B 2 -30.342 9.267 6.692 1 73.66 ? F18 TD2 301 A 1 HETATM 45 F F28 TD2 . . . B 2 -12.075 8.75 3.896 1 36.96 ? F28 TD2 301 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 45 #