data_5H9R # _model_server_result.job_id qPIRrWZ8YT3FNZVxV9TErw _model_server_result.datetime_utc '2024-11-21 23:25:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h9r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5H9R # _exptl.entry_id 5H9R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 503.499 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S},3~{R},4~{S},5~{R},6~{R})-2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-4-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]sulfanyl-6-(hydroxymethyl)oxane-3,4,5-triol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H9R _cell.length_a 36.814 _cell.length_b 57.69 _cell.length_c 62.983 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H9R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H26 F N3 O9 S' _chem_comp.formula_weight 503.499 _chem_comp.id TGZ _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S},3~{R},4~{S},5~{R},6~{R})-2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-4-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]sulfanyl-6-(hydroxymethyl)oxane-3,4,5-triol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F18 C14 TGZ sing 290 n n C14 C15 TGZ doub 291 n y C14 C13 TGZ sing 292 n y C15 C16 TGZ sing 293 n y C13 C12 TGZ doub 294 n y O2' C2' TGZ sing 295 n n O3' C3' TGZ sing 296 n n O4 C4 TGZ sing 297 n n C16 C17 TGZ doub 298 n y C2' C3' TGZ sing 299 n n C2' C1' TGZ sing 300 n n C12 C17 TGZ sing 301 n y C12 C10 TGZ sing 302 n n C3' C4' TGZ sing 303 n n C6 O6 TGZ sing 304 n n C6 C5 TGZ sing 305 n n C11 C10 TGZ doub 306 n y C11 N7 TGZ sing 307 n y O5 C5 TGZ sing 308 n n O5 C1 TGZ sing 309 n n C10 N9 TGZ sing 310 n y S1 C1' TGZ sing 311 n n S1 C1 TGZ sing 312 n n C4 C5 TGZ sing 313 n n C4 C3 TGZ sing 314 n n C1' O5' TGZ sing 315 n n C2 C1 TGZ sing 316 n n C2 C3 TGZ sing 317 n n C2 O2 TGZ sing 318 n n N7 C3 TGZ sing 319 n n N7 N8 TGZ sing 320 n y O4' C4' TGZ sing 321 n n C4' C5' TGZ sing 322 n n N9 N8 TGZ doub 323 n y O5' C5' TGZ sing 324 n n C5' C6' TGZ sing 325 n n C6' O6' TGZ sing 326 n n C2 H1 TGZ sing 327 n n C3 H2 TGZ sing 328 n n C5 H3 TGZ sing 329 n n C6 H4 TGZ sing 330 n n C6 H5 TGZ sing 331 n n C1 H6 TGZ sing 332 n n C1' H7 TGZ sing 333 n n C5' H8 TGZ sing 334 n n C6' H9 TGZ sing 335 n n C6' H10 TGZ sing 336 n n O6 H11 TGZ sing 337 n n O6' H12 TGZ sing 338 n n C4 H13 TGZ sing 339 n n C4' H14 TGZ sing 340 n n O4 H15 TGZ sing 341 n n O4' H16 TGZ sing 342 n n C3' H17 TGZ sing 343 n n O3' H18 TGZ sing 344 n n C2' H19 TGZ sing 345 n n O2 H20 TGZ sing 346 n n O2' H21 TGZ sing 347 n n C11 H22 TGZ sing 348 n n C13 H23 TGZ sing 349 n n C15 H24 TGZ sing 350 n n C16 H25 TGZ sing 351 n n C17 H26 TGZ sing 352 n n # _atom_sites.entry_id 5H9R _atom_sites.fract_transf_matrix[1][1] 0.027164 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TGZ A 1 301 1 TGZ TAZ . C 3 HOH A 1 401 117 HOH HOH . C 3 HOH A 2 402 91 HOH HOH . C 3 HOH A 3 403 51 HOH HOH . C 3 HOH A 4 404 73 HOH HOH . C 3 HOH A 5 405 101 HOH HOH . C 3 HOH A 6 406 122 HOH HOH . C 3 HOH A 7 407 56 HOH HOH . C 3 HOH A 8 408 93 HOH HOH . C 3 HOH A 9 409 38 HOH HOH . C 3 HOH A 10 410 85 HOH HOH . C 3 HOH A 11 411 46 HOH HOH . C 3 HOH A 12 412 11 HOH HOH . C 3 HOH A 13 413 70 HOH HOH . C 3 HOH A 14 414 71 HOH HOH . C 3 HOH A 15 415 52 HOH HOH . C 3 HOH A 16 416 19 HOH HOH . C 3 HOH A 17 417 83 HOH HOH . C 3 HOH A 18 418 22 HOH HOH . C 3 HOH A 19 419 12 HOH HOH . C 3 HOH A 20 420 27 HOH HOH . C 3 HOH A 21 421 4 HOH HOH . C 3 HOH A 22 422 82 HOH HOH . C 3 HOH A 23 423 13 HOH HOH . C 3 HOH A 24 424 24 HOH HOH . C 3 HOH A 25 425 43 HOH HOH . C 3 HOH A 26 426 37 HOH HOH . C 3 HOH A 27 427 3 HOH HOH . C 3 HOH A 28 428 103 HOH HOH . C 3 HOH A 29 429 90 HOH HOH . C 3 HOH A 30 430 8 HOH HOH . C 3 HOH A 31 431 32 HOH HOH . C 3 HOH A 32 432 36 HOH HOH . C 3 HOH A 33 433 18 HOH HOH . C 3 HOH A 34 434 81 HOH HOH . C 3 HOH A 35 435 53 HOH HOH . C 3 HOH A 36 436 2 HOH HOH . C 3 HOH A 37 437 119 HOH HOH . C 3 HOH A 38 438 14 HOH HOH . C 3 HOH A 39 439 89 HOH HOH . C 3 HOH A 40 440 94 HOH HOH . C 3 HOH A 41 441 41 HOH HOH . C 3 HOH A 42 442 47 HOH HOH . C 3 HOH A 43 443 60 HOH HOH . C 3 HOH A 44 444 84 HOH HOH . C 3 HOH A 45 445 7 HOH HOH . C 3 HOH A 46 446 6 HOH HOH . C 3 HOH A 47 447 1 HOH HOH . C 3 HOH A 48 448 69 HOH HOH . C 3 HOH A 49 449 62 HOH HOH . C 3 HOH A 50 450 9 HOH HOH . C 3 HOH A 51 451 28 HOH HOH . C 3 HOH A 52 452 25 HOH HOH . C 3 HOH A 53 453 120 HOH HOH . C 3 HOH A 54 454 78 HOH HOH . C 3 HOH A 55 455 54 HOH HOH . C 3 HOH A 56 456 108 HOH HOH . C 3 HOH A 57 457 31 HOH HOH . C 3 HOH A 58 458 49 HOH HOH . C 3 HOH A 59 459 34 HOH HOH . C 3 HOH A 60 460 50 HOH HOH . C 3 HOH A 61 461 40 HOH HOH . C 3 HOH A 62 462 74 HOH HOH . C 3 HOH A 63 463 39 HOH HOH . C 3 HOH A 64 464 33 HOH HOH . C 3 HOH A 65 465 116 HOH HOH . C 3 HOH A 66 466 66 HOH HOH . C 3 HOH A 67 467 126 HOH HOH . C 3 HOH A 68 468 17 HOH HOH . C 3 HOH A 69 469 87 HOH HOH . C 3 HOH A 70 470 68 HOH HOH . C 3 HOH A 71 471 98 HOH HOH . C 3 HOH A 72 472 42 HOH HOH . C 3 HOH A 73 473 118 HOH HOH . C 3 HOH A 74 474 44 HOH HOH . C 3 HOH A 75 475 110 HOH HOH . C 3 HOH A 76 476 48 HOH HOH . C 3 HOH A 77 477 15 HOH HOH . C 3 HOH A 78 478 58 HOH HOH . C 3 HOH A 79 479 88 HOH HOH . C 3 HOH A 80 480 106 HOH HOH . C 3 HOH A 81 481 35 HOH HOH . C 3 HOH A 82 482 5 HOH HOH . C 3 HOH A 83 483 109 HOH HOH . C 3 HOH A 84 484 92 HOH HOH . C 3 HOH A 85 485 23 HOH HOH . C 3 HOH A 86 486 111 HOH HOH . C 3 HOH A 87 487 107 HOH HOH . C 3 HOH A 88 488 21 HOH HOH . C 3 HOH A 89 489 77 HOH HOH . C 3 HOH A 90 490 29 HOH HOH . C 3 HOH A 91 491 63 HOH HOH . C 3 HOH A 92 492 127 HOH HOH . C 3 HOH A 93 493 45 HOH HOH . C 3 HOH A 94 494 115 HOH HOH . C 3 HOH A 95 495 61 HOH HOH . C 3 HOH A 96 496 20 HOH HOH . C 3 HOH A 97 497 16 HOH HOH . C 3 HOH A 98 498 75 HOH HOH . C 3 HOH A 99 499 10 HOH HOH . C 3 HOH A 100 500 55 HOH HOH . C 3 HOH A 101 501 30 HOH HOH . C 3 HOH A 102 502 96 HOH HOH . C 3 HOH A 103 503 105 HOH HOH . C 3 HOH A 104 504 76 HOH HOH . C 3 HOH A 105 505 80 HOH HOH . C 3 HOH A 106 506 113 HOH HOH . C 3 HOH A 107 507 124 HOH HOH . C 3 HOH A 108 508 114 HOH HOH . C 3 HOH A 109 509 100 HOH HOH . C 3 HOH A 110 510 104 HOH HOH . C 3 HOH A 111 511 112 HOH HOH . C 3 HOH A 112 512 123 HOH HOH . C 3 HOH A 113 513 79 HOH HOH . C 3 HOH A 114 514 95 HOH HOH . C 3 HOH A 115 515 125 HOH HOH . C 3 HOH A 116 516 102 HOH HOH . C 3 HOH A 117 517 57 HOH HOH . C 3 HOH A 118 518 72 HOH HOH . C 3 HOH A 119 519 26 HOH HOH . C 3 HOH A 120 520 86 HOH HOH . C 3 HOH A 121 521 67 HOH HOH . C 3 HOH A 122 522 97 HOH HOH . C 3 HOH A 123 523 59 HOH HOH . C 3 HOH A 124 524 121 HOH HOH . C 3 HOH A 125 525 99 HOH HOH . C 3 HOH A 126 526 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 TGZ . . . B 2 -2.703 -10.271 0.781 1 19.18 ? S1 TGZ 301 A 1 HETATM 2 C C2 TGZ . . . B 2 -0.234 -9.215 1.32 1 18.67 ? C2 TGZ 301 A 1 HETATM 3 C C3 TGZ . . . B 2 0.556 -7.95 1.642 1 17.68 ? C3 TGZ 301 A 1 HETATM 4 C C5 TGZ . . . B 2 -1.452 -6.603 1.056 1 14.57 ? C5 TGZ 301 A 1 HETATM 5 C C6 TGZ . . . B 2 -2.009 -5.426 0.259 1 14.27 ? C6 TGZ 301 A 1 HETATM 6 C C14 TGZ . . . B 2 6.315 -8.811 -2.299 1 19.97 ? C14 TGZ 301 A 1 HETATM 7 C C1 TGZ . . . B 2 -1.735 -8.944 1.428 1 16.93 ? C1 TGZ 301 A 1 HETATM 8 C C1' TGZ . . . B 2 -4.373 -9.782 1.048 1 21.47 ? C1' TGZ 301 A 1 HETATM 9 O O5 TGZ . . . B 2 -2.117 -7.804 0.659 1 18.01 ? O5 TGZ 301 A 1 HETATM 10 O O5' TGZ . . . B 2 -4.862 -10.433 2.226 1 26.56 ? O5' TGZ 301 A 1 HETATM 11 C C5' TGZ . . . B 2 -6.151 -9.932 2.584 1 26.21 ? C5' TGZ 301 A 1 HETATM 12 C C6' TGZ . . . B 2 -6.563 -10.513 3.93 1 32.41 ? C6' TGZ 301 A 1 HETATM 13 O O6 TGZ . . . B 2 -3.406 -5.275 0.527 1 17.64 ? O6 TGZ 301 A 1 HETATM 14 O O6' TGZ . . . B 2 -5.69 -9.996 4.942 1 34.6 ? O6' TGZ 301 A 1 HETATM 15 C C4 TGZ . . . B 2 0.042 -6.771 0.828 1 18.35 ? C4 TGZ 301 A 1 HETATM 16 C C4' TGZ . . . B 2 -7.153 -10.295 1.494 1 26.85 ? C4' TGZ 301 A 1 HETATM 17 O O4 TGZ . . . B 2 0.317 -6.993 -0.566 1 14.78 ? O4 TGZ 301 A 1 HETATM 18 O O4' TGZ . . . B 2 -7.213 -11.721 1.378 1 26.83 ? O4' TGZ 301 A 1 HETATM 19 C C3' TGZ . . . B 2 -6.701 -9.675 0.175 1 24.82 ? C3' TGZ 301 A 1 HETATM 20 O O3' TGZ . . . B 2 -7.564 -10.025 -0.916 1 30 ? O3' TGZ 301 A 1 HETATM 21 C C2' TGZ . . . B 2 -5.277 -10.103 -0.141 1 25.17 ? C2' TGZ 301 A 1 HETATM 22 O O2 TGZ . . . B 2 0.145 -10.25 2.24 1 23.52 ? O2 TGZ 301 A 1 HETATM 23 O O2' TGZ . . . B 2 -4.869 -9.351 -1.287 1 18.87 ? O2' TGZ 301 A 1 HETATM 24 N N7 TGZ . . . B 2 2.008 -8.121 1.376 1 18.92 ? N7 TGZ 301 A 1 HETATM 25 N N8 TGZ . . . B 2 2.82 -7.943 2.495 1 26.26 ? N8 TGZ 301 A 1 HETATM 26 N N9 TGZ . . . B 2 4.13 -8.14 2.03 1 26.51 ? N9 TGZ 301 A 1 HETATM 27 C C10 TGZ . . . B 2 4.076 -8.417 0.707 1 21.28 ? C10 TGZ 301 A 1 HETATM 28 C C11 TGZ . . . B 2 2.745 -8.4 0.29 1 21.94 ? C11 TGZ 301 A 1 HETATM 29 C C12 TGZ . . . B 2 5.275 -8.678 -0.14 1 20.95 ? C12 TGZ 301 A 1 HETATM 30 C C13 TGZ . . . B 2 5.189 -8.572 -1.519 1 15.73 ? C13 TGZ 301 A 1 HETATM 31 C C15 TGZ . . . B 2 7.524 -9.141 -1.711 1 17.96 ? C15 TGZ 301 A 1 HETATM 32 C C16 TGZ . . . B 2 7.619 -9.235 -0.324 1 26.11 ? C16 TGZ 301 A 1 HETATM 33 C C17 TGZ . . . B 2 6.492 -9 0.458 1 28.61 ? C17 TGZ 301 A 1 HETATM 34 F F18 TGZ . . . B 2 6.241 -8.728 -3.638 1 22.03 ? F18 TGZ 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #