data_5HA9 # _model_server_result.job_id 7nV7yzhWlQhhgqxuh21e7A _model_server_result.datetime_utc '2024-11-23 21:53:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ha9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":406}' # _entry.id 5HA9 # _exptl.entry_id 5HA9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.403 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Amitriptyline _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HA9 _cell.length_a 48 _cell.length_b 92.431 _cell.length_c 162.932 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HA9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H23 N' _chem_comp.formula_weight 277.403 _chem_comp.id TP0 _chem_comp.mon_nstd_flag . _chem_comp.name Amitriptyline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-(10,11-dihydro-5H-dibenzo[a,d][7]annulen-5-ylidene)-N,N-dimethylpropan-1-amine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C14 TP0 sing 321 n n N1 C19 TP0 sing 322 n n N1 C20 TP0 sing 323 n n C3 C6 TP0 sing 324 n n C3 C7 TP0 sing 325 n n C3 C8 TP0 doub 326 n n C4 C6 TP0 doub 327 n y C4 C10 TP0 sing 328 n y C4 C21 TP0 sing 329 n n C5 C7 TP0 doub 330 n y C5 C11 TP0 sing 331 n y C5 C22 TP0 sing 332 n n C6 C12 TP0 sing 333 n y C7 C13 TP0 sing 334 n y C8 C29 TP0 sing 335 n n C10 C15 TP0 doub 336 n y C11 C16 TP0 doub 337 n y C12 C17 TP0 doub 338 n y C13 C18 TP0 doub 339 n y C14 C29 TP0 sing 340 n n C15 C17 TP0 sing 341 n y C16 C18 TP0 sing 342 n y C21 C22 TP0 sing 343 n n C8 H8 TP0 sing 344 n n C10 H10 TP0 sing 345 n n C11 H11 TP0 sing 346 n n C12 H12 TP0 sing 347 n n C13 H13 TP0 sing 348 n n C14 H14 TP0 sing 349 n n C14 H14A TP0 sing 350 n n C15 H15 TP0 sing 351 n n C16 H16 TP0 sing 352 n n C17 H17 TP0 sing 353 n n C18 H18 TP0 sing 354 n n C19 H19 TP0 sing 355 n n C19 H19A TP0 sing 356 n n C19 H19B TP0 sing 357 n n C20 H20 TP0 sing 358 n n C20 H20A TP0 sing 359 n n C20 H20B TP0 sing 360 n n C21 H21 TP0 sing 361 n n C21 H21A TP0 sing 362 n n C22 H22 TP0 sing 363 n n C22 H22A TP0 sing 364 n n C29 H29 TP0 sing 365 n n C29 H29A TP0 sing 366 n n # _atom_sites.entry_id 5HA9 _atom_sites.fract_transf_matrix[1][1] 0.020833 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 401 1 GOL GOL . D 3 SO4 A 1 402 1 SO4 SO4 . E 3 SO4 A 1 403 8 SO4 SO4 . F 2 GOL B 1 401 1 GOL GOL . G 3 SO4 B 1 402 2 SO4 SO4 . H 3 SO4 B 1 403 3 SO4 SO4 . I 3 SO4 B 1 404 5 SO4 SO4 . J 3 SO4 B 1 405 7 SO4 SO4 . K 4 TP0 B 1 406 1 TP0 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TP0 . . . K 4 -16.705 2.796 -6.441 1 112.53 ? N1 TP0 406 B 1 HETATM 2 C C3 TP0 . . . K 4 -12.064 3.931 -6.632 1 129.87 ? C3 TP0 406 B 1 HETATM 3 C C4 TP0 . . . K 4 -9.747 3.69 -7.265 1 131.5 ? C4 TP0 406 B 1 HETATM 4 C C5 TP0 . . . K 4 -11.359 6.175 -7.464 1 135.58 ? C5 TP0 406 B 1 HETATM 5 C C6 TP0 . . . K 4 -10.793 3.436 -6.389 1 129.81 ? C6 TP0 406 B 1 HETATM 6 C C7 TP0 . . . K 4 -12.216 5.315 -6.752 1 134.15 ? C7 TP0 406 B 1 HETATM 7 C C8 TP0 . . . K 4 -13.028 2.945 -6.924 1 124.92 ? C8 TP0 406 B 1 HETATM 8 C C10 TP0 . . . K 4 -8.477 3.17 -6.999 1 129.27 ? C10 TP0 406 B 1 HETATM 9 C C11 TP0 . . . K 4 -11.618 7.547 -7.473 1 136.44 ? C11 TP0 406 B 1 HETATM 10 C C12 TP0 . . . K 4 -10.597 2.676 -5.236 1 127.46 ? C12 TP0 406 B 1 HETATM 11 C C13 TP0 . . . K 4 -13.288 5.856 -6.041 1 135.43 ? C13 TP0 406 B 1 HETATM 12 C C14 TP0 . . . K 4 -15.44 3.529 -6.289 1 116.39 ? C14 TP0 406 B 1 HETATM 13 C C15 TP0 . . . K 4 -8.272 2.41 -5.848 1 126.77 ? C15 TP0 406 B 1 HETATM 14 C C16 TP0 . . . K 4 -12.705 8.071 -6.779 1 136.82 ? C16 TP0 406 B 1 HETATM 15 C C17 TP0 . . . K 4 -9.327 2.163 -4.972 1 125.9 ? C17 TP0 406 B 1 HETATM 16 C C18 TP0 . . . K 4 -13.543 7.224 -6.064 1 136.34 ? C18 TP0 406 B 1 HETATM 17 C C19 TP0 . . . K 4 -17.735 3.572 -5.736 1 110.76 ? C19 TP0 406 B 1 HETATM 18 C C20 TP0 . . . K 4 -17.133 2.581 -7.826 1 111.44 ? C20 TP0 406 B 1 HETATM 19 C C21 TP0 . . . K 4 -9.862 4.437 -8.456 1 133.27 ? C21 TP0 406 B 1 HETATM 20 C C22 TP0 . . . K 4 -10.197 5.923 -8.231 1 134.48 ? C22 TP0 406 B 1 HETATM 21 C C29 TP0 . . . K 4 -14.486 3.167 -7.418 1 120.85 ? C29 TP0 406 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 377 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #