data_5HA9
#
_model_server_result.job_id            b93C0-IH3AJLag3sypOM6g 
_model_server_result.datetime_utc      '2024-11-04 20:34:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ha9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":406}' 
#
_entry.id    5HA9 
#
_exptl.entry_id    5HA9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              277.403 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Amitriptyline 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HA9 
_cell.length_a            48 
_cell.length_b            92.431 
_cell.length_c            162.932 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HA9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H23 N' 
_chem_comp.formula_weight    277.403 
_chem_comp.id                TP0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Amitriptyline 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-(10,11-dihydro-5H-dibenzo[a,d][7]annulen-5-ylidene)-N,N-dimethylpropan-1-amine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C14 TP0 sing 321 n n 
N1 C19 TP0 sing 322 n n 
N1 C20 TP0 sing 323 n n 
C3 C6 TP0 sing 324 n n 
C3 C7 TP0 sing 325 n n 
C3 C8 TP0 doub 326 n n 
C4 C6 TP0 doub 327 n y 
C4 C10 TP0 sing 328 n y 
C4 C21 TP0 sing 329 n n 
C5 C7 TP0 doub 330 n y 
C5 C11 TP0 sing 331 n y 
C5 C22 TP0 sing 332 n n 
C6 C12 TP0 sing 333 n y 
C7 C13 TP0 sing 334 n y 
C8 C29 TP0 sing 335 n n 
C10 C15 TP0 doub 336 n y 
C11 C16 TP0 doub 337 n y 
C12 C17 TP0 doub 338 n y 
C13 C18 TP0 doub 339 n y 
C14 C29 TP0 sing 340 n n 
C15 C17 TP0 sing 341 n y 
C16 C18 TP0 sing 342 n y 
C21 C22 TP0 sing 343 n n 
C8 H8 TP0 sing 344 n n 
C10 H10 TP0 sing 345 n n 
C11 H11 TP0 sing 346 n n 
C12 H12 TP0 sing 347 n n 
C13 H13 TP0 sing 348 n n 
C14 H14 TP0 sing 349 n n 
C14 H14A TP0 sing 350 n n 
C15 H15 TP0 sing 351 n n 
C16 H16 TP0 sing 352 n n 
C17 H17 TP0 sing 353 n n 
C18 H18 TP0 sing 354 n n 
C19 H19 TP0 sing 355 n n 
C19 H19A TP0 sing 356 n n 
C19 H19B TP0 sing 357 n n 
C20 H20 TP0 sing 358 n n 
C20 H20A TP0 sing 359 n n 
C20 H20B TP0 sing 360 n n 
C21 H21 TP0 sing 361 n n 
C21 H21A TP0 sing 362 n n 
C22 H22 TP0 sing 363 n n 
C22 H22A TP0 sing 364 n n 
C29 H29 TP0 sing 365 n n 
C29 H29A TP0 sing 366 n n 
#
_atom_sites.entry_id                     5HA9 
_atom_sites.fract_transf_matrix[1][1]    0.020833 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010819 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006138 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 401 1 GOL GOL . 
D 3 SO4 A 1 402 1 SO4 SO4 . 
E 3 SO4 A 1 403 8 SO4 SO4 . 
F 2 GOL B 1 401 1 GOL GOL . 
G 3 SO4 B 1 402 2 SO4 SO4 . 
H 3 SO4 B 1 403 3 SO4 SO4 . 
I 3 SO4 B 1 404 5 SO4 SO4 . 
J 3 SO4 B 1 405 7 SO4 SO4 . 
K 4 TP0 B 1 406 1 TP0 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 TP0 . . . K 4 -16.705 2.796 -6.441 1 112.53 ? N1 TP0 406 B 1 
HETATM 2 C C3 TP0 . . . K 4 -12.064 3.931 -6.632 1 129.87 ? C3 TP0 406 B 1 
HETATM 3 C C4 TP0 . . . K 4 -9.747 3.69 -7.265 1 131.5 ? C4 TP0 406 B 1 
HETATM 4 C C5 TP0 . . . K 4 -11.359 6.175 -7.464 1 135.58 ? C5 TP0 406 B 1 
HETATM 5 C C6 TP0 . . . K 4 -10.793 3.436 -6.389 1 129.81 ? C6 TP0 406 B 1 
HETATM 6 C C7 TP0 . . . K 4 -12.216 5.315 -6.752 1 134.15 ? C7 TP0 406 B 1 
HETATM 7 C C8 TP0 . . . K 4 -13.028 2.945 -6.924 1 124.92 ? C8 TP0 406 B 1 
HETATM 8 C C10 TP0 . . . K 4 -8.477 3.17 -6.999 1 129.27 ? C10 TP0 406 B 1 
HETATM 9 C C11 TP0 . . . K 4 -11.618 7.547 -7.473 1 136.44 ? C11 TP0 406 B 1 
HETATM 10 C C12 TP0 . . . K 4 -10.597 2.676 -5.236 1 127.46 ? C12 TP0 406 B 1 
HETATM 11 C C13 TP0 . . . K 4 -13.288 5.856 -6.041 1 135.43 ? C13 TP0 406 B 1 
HETATM 12 C C14 TP0 . . . K 4 -15.44 3.529 -6.289 1 116.39 ? C14 TP0 406 B 1 
HETATM 13 C C15 TP0 . . . K 4 -8.272 2.41 -5.848 1 126.77 ? C15 TP0 406 B 1 
HETATM 14 C C16 TP0 . . . K 4 -12.705 8.071 -6.779 1 136.82 ? C16 TP0 406 B 1 
HETATM 15 C C17 TP0 . . . K 4 -9.327 2.163 -4.972 1 125.9 ? C17 TP0 406 B 1 
HETATM 16 C C18 TP0 . . . K 4 -13.543 7.224 -6.064 1 136.34 ? C18 TP0 406 B 1 
HETATM 17 C C19 TP0 . . . K 4 -17.735 3.572 -5.736 1 110.76 ? C19 TP0 406 B 1 
HETATM 18 C C20 TP0 . . . K 4 -17.133 2.581 -7.826 1 111.44 ? C20 TP0 406 B 1 
HETATM 19 C C21 TP0 . . . K 4 -9.862 4.437 -8.456 1 133.27 ? C21 TP0 406 B 1 
HETATM 20 C C22 TP0 . . . K 4 -10.197 5.923 -8.231 1 134.48 ? C22 TP0 406 B 1 
HETATM 21 C C29 TP0 . . . K 4 -14.486 3.167 -7.418 1 120.85 ? C29 TP0 406 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           21 
#