data_5HBE # _model_server_result.job_id Ze7xFLsBxKG7AjMv1UBIyg _model_server_result.datetime_utc '2024-11-15 03:13:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hbe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5HBE # _exptl.entry_id 5HBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 448.923 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-[3-chloranyl-5-[1-methyl-2,2-bis(oxidanylidene)-3~{H}-2,1-benzothiazol-5-yl]pyridin-4-yl]-1-oxa-3,8-diazaspiro[4.5]decan-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HBE _cell.length_a 71.007 _cell.length_b 71.115 _cell.length_c 173.152 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H21 Cl N4 O4 S' _chem_comp.formula_weight 448.923 _chem_comp.id 5Y6 _chem_comp.mon_nstd_flag . _chem_comp.name 8-[3-chloranyl-5-[1-methyl-2,2-bis(oxidanylidene)-3~{H}-2,1-benzothiazol-5-yl]pyridin-4-yl]-1-oxa-3,8-diazaspiro[4.5]decan-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 5Y6 doub 1 n n C2 O30 5Y6 sing 2 n n C2 N3 5Y6 sing 3 n n O30 C5 5Y6 sing 4 n n CL C12 5Y6 sing 5 n n C6 C5 5Y6 sing 6 n n C6 C7 5Y6 sing 7 n n N3 C4 5Y6 sing 8 n n C5 C4 5Y6 sing 9 n n C5 C10 5Y6 sing 10 n n C7 N8 5Y6 sing 11 n n C12 C14 5Y6 doub 12 n y C12 C11 5Y6 sing 13 n y C10 C9 5Y6 sing 14 n n N8 C11 5Y6 sing 15 n n N8 C9 5Y6 sing 16 n n C14 N15 5Y6 sing 17 n y C11 C17 5Y6 doub 18 n y N15 C16 5Y6 doub 19 n y C17 C16 5Y6 sing 20 n y C17 C18 5Y6 sing 21 n n C19 C18 5Y6 doub 22 n y C19 C20 5Y6 sing 23 n y C18 C29 5Y6 sing 24 n y C21 C20 5Y6 sing 25 n n C21 S22 5Y6 sing 26 n n C20 C27 5Y6 doub 27 n y C29 C28 5Y6 doub 28 n y O24 S22 5Y6 doub 29 n n S22 O23 5Y6 doub 30 n n S22 N25 5Y6 sing 31 n n C27 C28 5Y6 sing 32 n y C27 N25 5Y6 sing 33 n n N25 C26 5Y6 sing 34 n n C4 H1 5Y6 sing 35 n n C4 H2 5Y6 sing 36 n n C6 H3 5Y6 sing 37 n n C6 H4 5Y6 sing 38 n n C7 H5 5Y6 sing 39 n n C7 H6 5Y6 sing 40 n n C16 H7 5Y6 sing 41 n n C19 H8 5Y6 sing 42 n n C21 H9 5Y6 sing 43 n n C21 H10 5Y6 sing 44 n n N3 H11 5Y6 sing 45 n n C9 H12 5Y6 sing 46 n n C9 H13 5Y6 sing 47 n n C10 H14 5Y6 sing 48 n n C10 H15 5Y6 sing 49 n n C14 H16 5Y6 sing 50 n n C26 H17 5Y6 sing 51 n n C26 H18 5Y6 sing 52 n n C26 H19 5Y6 sing 53 n n C28 H20 5Y6 sing 54 n n C29 H21 5Y6 sing 55 n n # _atom_sites.entry_id 5HBE _atom_sites.fract_transf_matrix[1][1] 0.014083 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 5Y6 A 1 401 1 5Y6 INX . D 4 DMS A 1 402 1 DMS DMS . E 5 EDO A 1 403 2 EDO EDO . F 6 FMT A 1 404 3 FMT FMT . G 6 FMT B 1 301 4 FMT FMT . H 6 FMT B 1 302 5 FMT FMT . I 6 FMT B 1 303 6 FMT FMT . J 7 HOH A 1 501 47 HOH HOH . J 7 HOH A 2 502 6 HOH HOH . J 7 HOH A 3 503 11 HOH HOH . J 7 HOH A 4 504 42 HOH HOH . J 7 HOH A 5 505 3 HOH HOH . J 7 HOH A 6 506 48 HOH HOH . J 7 HOH A 7 507 37 HOH HOH . J 7 HOH A 8 508 43 HOH HOH . J 7 HOH A 9 509 46 HOH HOH . J 7 HOH A 10 510 12 HOH HOH . J 7 HOH A 11 511 44 HOH HOH . J 7 HOH A 12 512 10 HOH HOH . J 7 HOH A 13 513 38 HOH HOH . J 7 HOH A 14 514 31 HOH HOH . J 7 HOH A 15 515 16 HOH HOH . J 7 HOH A 16 516 13 HOH HOH . J 7 HOH A 17 517 14 HOH HOH . J 7 HOH A 18 518 51 HOH HOH . J 7 HOH A 19 519 45 HOH HOH . J 7 HOH A 20 520 49 HOH HOH . J 7 HOH A 21 521 1 HOH HOH . J 7 HOH A 22 522 39 HOH HOH . J 7 HOH A 23 523 4 HOH HOH . J 7 HOH A 24 524 8 HOH HOH . J 7 HOH A 25 525 15 HOH HOH . J 7 HOH A 26 526 55 HOH HOH . J 7 HOH A 27 527 35 HOH HOH . J 7 HOH A 28 528 2 HOH HOH . J 7 HOH A 29 529 5 HOH HOH . J 7 HOH A 30 530 9 HOH HOH . J 7 HOH A 31 531 26 HOH HOH . J 7 HOH A 32 532 17 HOH HOH . J 7 HOH A 33 533 7 HOH HOH . J 7 HOH A 34 534 50 HOH HOH . J 7 HOH A 35 535 41 HOH HOH . J 7 HOH A 36 536 52 HOH HOH . J 7 HOH A 37 537 40 HOH HOH . J 7 HOH A 38 538 36 HOH HOH . K 7 HOH B 1 401 54 HOH HOH . K 7 HOH B 2 402 19 HOH HOH . K 7 HOH B 3 403 18 HOH HOH . K 7 HOH B 4 404 25 HOH HOH . K 7 HOH B 5 405 24 HOH HOH . K 7 HOH B 6 406 28 HOH HOH . K 7 HOH B 7 407 53 HOH HOH . K 7 HOH B 8 408 22 HOH HOH . K 7 HOH B 9 409 30 HOH HOH . K 7 HOH B 10 410 32 HOH HOH . K 7 HOH B 11 411 33 HOH HOH . K 7 HOH B 12 412 21 HOH HOH . K 7 HOH B 13 413 27 HOH HOH . K 7 HOH B 14 414 29 HOH HOH . K 7 HOH B 15 415 20 HOH HOH . K 7 HOH B 16 416 23 HOH HOH . K 7 HOH B 17 417 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 5Y6 . . . C 3 -3.892 16.501 -14.266 1 85.91 ? C2 5Y6 401 A 1 HETATM 2 C C4 5Y6 . . . C 3 -3.347 15.232 -12.432 1 82.94 ? C4 5Y6 401 A 1 HETATM 3 C C5 5Y6 . . . C 3 -4.692 14.785 -13.038 1 82.23 ? C5 5Y6 401 A 1 HETATM 4 C C6 5Y6 . . . C 3 -4.588 13.397 -13.665 1 81.3 ? C6 5Y6 401 A 1 HETATM 5 C C7 5Y6 . . . C 3 -4.505 12.285 -12.613 1 78.93 ? C7 5Y6 401 A 1 HETATM 6 C C11 5Y6 . . . C 3 -6.308 11.315 -11.169 1 69.84 ? C11 5Y6 401 A 1 HETATM 7 C C12 5Y6 . . . C 3 -7.174 10.627 -12.037 1 70.14 ? C12 5Y6 401 A 1 HETATM 8 C C16 5Y6 . . . C 3 -6.951 9.72 -9.445 1 64.31 ? C16 5Y6 401 A 1 HETATM 9 C C17 5Y6 . . . C 3 -6.205 10.828 -9.833 1 63.24 ? C17 5Y6 401 A 1 HETATM 10 C C18 5Y6 . . . C 3 -5.319 11.477 -8.844 1 61.64 ? C18 5Y6 401 A 1 HETATM 11 C C19 5Y6 . . . C 3 -3.951 11.51 -9.081 1 61.47 ? C19 5Y6 401 A 1 HETATM 12 C C21 5Y6 . . . C 3 -1.589 12.218 -8.341 1 62.86 ? C21 5Y6 401 A 1 HETATM 13 C C27 5Y6 . . . C 3 -3.567 12.723 -7.035 1 62.65 ? C27 5Y6 401 A 1 HETATM 14 O O1 5Y6 . . . C 3 -3.819 17.3 -15.175 1 91.49 ? O1 5Y6 401 A 1 HETATM 15 N N3 5Y6 . . . C 3 -2.907 16.264 -13.382 1 85.33 ? N3 5Y6 401 A 1 HETATM 16 N N8 5Y6 . . . C 3 -5.56 12.423 -11.593 1 75.03 ? N8 5Y6 401 A 1 HETATM 17 C C9 5Y6 . . . C 3 -5.741 13.745 -10.971 1 77.9 ? C9 5Y6 401 A 1 HETATM 18 C C10 5Y6 . . . C 3 -5.825 14.855 -12.021 1 80.07 ? C10 5Y6 401 A 1 HETATM 19 CL CL 5Y6 . . . C 3 -7.419 11.089 -13.694 1 75.53 ? CL 5Y6 401 A 1 HETATM 20 C C14 5Y6 . . . C 3 -7.874 9.534 -11.554 1 68.79 ? C14 5Y6 401 A 1 HETATM 21 N N15 5Y6 . . . C 3 -7.751 9.114 -10.303 1 66.3 ? N15 5Y6 401 A 1 HETATM 22 C C20 5Y6 . . . C 3 -3.092 12.122 -8.189 1 62.12 ? C20 5Y6 401 A 1 HETATM 23 S S22 5Y6 . . . C 3 -1.209 13.449 -7.067 1 60.95 ? S22 5Y6 401 A 1 HETATM 24 O O23 5Y6 . . . C 3 -0.166 13.003 -6.22 1 63.09 ? O23 5Y6 401 A 1 HETATM 25 O O24 5Y6 . . . C 3 -1.235 14.752 -7.624 1 61.65 ? O24 5Y6 401 A 1 HETATM 26 N N25 5Y6 . . . C 3 -2.621 13.332 -6.201 1 61.78 ? N25 5Y6 401 A 1 HETATM 27 C C26 5Y6 . . . C 3 -2.836 13.821 -4.84 1 58.44 ? C26 5Y6 401 A 1 HETATM 28 C C28 5Y6 . . . C 3 -4.964 12.695 -6.802 1 61.16 ? C28 5Y6 401 A 1 HETATM 29 C C29 5Y6 . . . C 3 -5.824 12.086 -7.69 1 61.38 ? C29 5Y6 401 A 1 HETATM 30 O O30 5Y6 . . . C 3 -4.979 15.766 -14.064 1 83.8 ? O30 5Y6 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 30 #