data_5HBE # _model_server_result.job_id 1f23TA0AjICtvWZE1CZagg _model_server_result.datetime_utc '2024-11-15 03:15:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hbe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5HBE # _exptl.entry_id 5HBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HBE _cell.length_a 71.007 _cell.length_b 71.115 _cell.length_c 173.152 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 138 n n S C1 DMS sing 139 n n S C2 DMS sing 140 n n C1 H11 DMS sing 141 n n C1 H12 DMS sing 142 n n C1 H13 DMS sing 143 n n C2 H21 DMS sing 144 n n C2 H22 DMS sing 145 n n C2 H23 DMS sing 146 n n # _atom_sites.entry_id 5HBE _atom_sites.fract_transf_matrix[1][1] 0.014083 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 5Y6 A 1 401 1 5Y6 INX . D 4 DMS A 1 402 1 DMS DMS . E 5 EDO A 1 403 2 EDO EDO . F 6 FMT A 1 404 3 FMT FMT . G 6 FMT B 1 301 4 FMT FMT . H 6 FMT B 1 302 5 FMT FMT . I 6 FMT B 1 303 6 FMT FMT . J 7 HOH A 1 501 47 HOH HOH . J 7 HOH A 2 502 6 HOH HOH . J 7 HOH A 3 503 11 HOH HOH . J 7 HOH A 4 504 42 HOH HOH . J 7 HOH A 5 505 3 HOH HOH . J 7 HOH A 6 506 48 HOH HOH . J 7 HOH A 7 507 37 HOH HOH . J 7 HOH A 8 508 43 HOH HOH . J 7 HOH A 9 509 46 HOH HOH . J 7 HOH A 10 510 12 HOH HOH . J 7 HOH A 11 511 44 HOH HOH . J 7 HOH A 12 512 10 HOH HOH . J 7 HOH A 13 513 38 HOH HOH . J 7 HOH A 14 514 31 HOH HOH . J 7 HOH A 15 515 16 HOH HOH . J 7 HOH A 16 516 13 HOH HOH . J 7 HOH A 17 517 14 HOH HOH . J 7 HOH A 18 518 51 HOH HOH . J 7 HOH A 19 519 45 HOH HOH . J 7 HOH A 20 520 49 HOH HOH . J 7 HOH A 21 521 1 HOH HOH . J 7 HOH A 22 522 39 HOH HOH . J 7 HOH A 23 523 4 HOH HOH . J 7 HOH A 24 524 8 HOH HOH . J 7 HOH A 25 525 15 HOH HOH . J 7 HOH A 26 526 55 HOH HOH . J 7 HOH A 27 527 35 HOH HOH . J 7 HOH A 28 528 2 HOH HOH . J 7 HOH A 29 529 5 HOH HOH . J 7 HOH A 30 530 9 HOH HOH . J 7 HOH A 31 531 26 HOH HOH . J 7 HOH A 32 532 17 HOH HOH . J 7 HOH A 33 533 7 HOH HOH . J 7 HOH A 34 534 50 HOH HOH . J 7 HOH A 35 535 41 HOH HOH . J 7 HOH A 36 536 52 HOH HOH . J 7 HOH A 37 537 40 HOH HOH . J 7 HOH A 38 538 36 HOH HOH . K 7 HOH B 1 401 54 HOH HOH . K 7 HOH B 2 402 19 HOH HOH . K 7 HOH B 3 403 18 HOH HOH . K 7 HOH B 4 404 25 HOH HOH . K 7 HOH B 5 405 24 HOH HOH . K 7 HOH B 6 406 28 HOH HOH . K 7 HOH B 7 407 53 HOH HOH . K 7 HOH B 8 408 22 HOH HOH . K 7 HOH B 9 409 30 HOH HOH . K 7 HOH B 10 410 32 HOH HOH . K 7 HOH B 11 411 33 HOH HOH . K 7 HOH B 12 412 21 HOH HOH . K 7 HOH B 13 413 27 HOH HOH . K 7 HOH B 14 414 29 HOH HOH . K 7 HOH B 15 415 20 HOH HOH . K 7 HOH B 16 416 23 HOH HOH . K 7 HOH B 17 417 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 -5.286 13.758 -17.395 1 94.68 ? S DMS 402 A 1 HETATM 2 O O DMS . . . D 4 -5.214 12.052 -16.866 1 96.6 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . D 4 -5.823 13.799 -19.12 1 96.23 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . D 4 -6.693 14.528 -16.556 1 97.55 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #