data_5HBF
#
_model_server_result.job_id            HnaHRbx9c0TSvjGbCLrSrg 
_model_server_result.datetime_utc      '2024-11-29 17:20:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hbf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    5HBF 
#
_exptl.entry_id    5HBF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.13 
_cell.angle_gamma         90 
_cell.entry_id            5HBF 
_cell.length_a            51.143 
_cell.length_b            106.661 
_cell.length_c            85.67 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HBF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
A,B,C,D,E,F,G,H 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 51 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 307 A CYS 307 1_555 A SG CYS 370 A CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 420 A CYS 420 1_555 A SG CYS 440 A CYS 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 A SG CYS 450 A CYS 450 1_555 A SG CYS 463 A CYS 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf5 A SG CYS 460 A CYS 460 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf6 B SG CYS 26 B CYS 26 1_555 B SG CYS 51 B CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 B SG CYS 307 B CYS 307 1_555 B SG CYS 370 B CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 B SG CYS 420 B CYS 420 1_555 B SG CYS 440 B CYS 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? 
disulf ? disulf9 B SG CYS 450 B CYS 450 1_555 B SG CYS 463 B CYS 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf10 B SG CYS 460 B CYS 460 1_555 B SG CYS 462 B CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5HBF 
_atom_sites.fract_transf_matrix[1][1]    0.019553 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006026 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009375 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012214 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 501 1 GOL GOL . 
D 2 GOL A 1 502 1 GOL GOL . 
E 2 GOL B 1 501 1 GOL GOL . 
F 2 GOL B 1 502 1 GOL GOL . 
G 3 HOH A 1 601 182 HOH HOH . 
G 3 HOH A 2 602 89 HOH HOH . 
G 3 HOH A 3 603 131 HOH HOH . 
G 3 HOH A 4 604 154 HOH HOH . 
G 3 HOH A 5 605 169 HOH HOH . 
G 3 HOH A 6 606 80 HOH HOH . 
G 3 HOH A 7 607 143 HOH HOH . 
G 3 HOH A 8 608 121 HOH HOH . 
G 3 HOH A 9 609 57 HOH HOH . 
G 3 HOH A 10 610 38 HOH HOH . 
G 3 HOH A 11 611 24 HOH HOH . 
G 3 HOH A 12 612 65 HOH HOH . 
G 3 HOH A 13 613 106 HOH HOH . 
G 3 HOH A 14 614 10 HOH HOH . 
G 3 HOH A 15 615 42 HOH HOH . 
G 3 HOH A 16 616 144 HOH HOH . 
G 3 HOH A 17 617 146 HOH HOH . 
G 3 HOH A 18 618 59 HOH HOH . 
G 3 HOH A 19 619 16 HOH HOH . 
G 3 HOH A 20 620 69 HOH HOH . 
G 3 HOH A 21 621 29 HOH HOH . 
G 3 HOH A 22 622 122 HOH HOH . 
G 3 HOH A 23 623 78 HOH HOH . 
G 3 HOH A 24 624 172 HOH HOH . 
G 3 HOH A 25 625 135 HOH HOH . 
G 3 HOH A 26 626 104 HOH HOH . 
G 3 HOH A 27 627 21 HOH HOH . 
G 3 HOH A 28 628 39 HOH HOH . 
G 3 HOH A 29 629 46 HOH HOH . 
G 3 HOH A 30 630 33 HOH HOH . 
G 3 HOH A 31 631 156 HOH HOH . 
G 3 HOH A 32 632 36 HOH HOH . 
G 3 HOH A 33 633 94 HOH HOH . 
G 3 HOH A 34 634 178 HOH HOH . 
G 3 HOH A 35 635 56 HOH HOH . 
G 3 HOH A 36 636 116 HOH HOH . 
G 3 HOH A 37 637 150 HOH HOH . 
G 3 HOH A 38 638 12 HOH HOH . 
G 3 HOH A 39 639 166 HOH HOH . 
G 3 HOH A 40 640 138 HOH HOH . 
G 3 HOH A 41 641 87 HOH HOH . 
G 3 HOH A 42 642 2 HOH HOH . 
G 3 HOH A 43 643 124 HOH HOH . 
G 3 HOH A 44 644 99 HOH HOH . 
G 3 HOH A 45 645 62 HOH HOH . 
G 3 HOH A 46 646 171 HOH HOH . 
G 3 HOH A 47 647 66 HOH HOH . 
G 3 HOH A 48 648 88 HOH HOH . 
G 3 HOH A 49 649 11 HOH HOH . 
G 3 HOH A 50 650 34 HOH HOH . 
G 3 HOH A 51 651 133 HOH HOH . 
G 3 HOH A 52 652 161 HOH HOH . 
G 3 HOH A 53 653 157 HOH HOH . 
G 3 HOH A 54 654 53 HOH HOH . 
G 3 HOH A 55 655 180 HOH HOH . 
G 3 HOH A 56 656 19 HOH HOH . 
G 3 HOH A 57 657 111 HOH HOH . 
G 3 HOH A 58 658 28 HOH HOH . 
G 3 HOH A 59 659 159 HOH HOH . 
G 3 HOH A 60 660 132 HOH HOH . 
G 3 HOH A 61 661 37 HOH HOH . 
G 3 HOH A 62 662 52 HOH HOH . 
G 3 HOH A 63 663 68 HOH HOH . 
G 3 HOH A 64 664 22 HOH HOH . 
G 3 HOH A 65 665 71 HOH HOH . 
G 3 HOH A 66 666 82 HOH HOH . 
G 3 HOH A 67 667 96 HOH HOH . 
G 3 HOH A 68 668 14 HOH HOH . 
G 3 HOH A 69 669 177 HOH HOH . 
G 3 HOH A 70 670 155 HOH HOH . 
G 3 HOH A 71 671 8 HOH HOH . 
G 3 HOH A 72 672 98 HOH HOH . 
G 3 HOH A 73 673 81 HOH HOH . 
G 3 HOH A 74 674 145 HOH HOH . 
G 3 HOH A 75 675 102 HOH HOH . 
G 3 HOH A 76 676 118 HOH HOH . 
G 3 HOH A 77 677 101 HOH HOH . 
G 3 HOH A 78 678 32 HOH HOH . 
G 3 HOH A 79 679 153 HOH HOH . 
G 3 HOH A 80 680 140 HOH HOH . 
G 3 HOH A 81 681 174 HOH HOH . 
G 3 HOH A 82 682 31 HOH HOH . 
G 3 HOH A 83 683 181 HOH HOH . 
G 3 HOH A 84 684 63 HOH HOH . 
G 3 HOH A 85 685 175 HOH HOH . 
G 3 HOH A 86 686 117 HOH HOH . 
G 3 HOH A 87 687 164 HOH HOH . 
G 3 HOH A 88 688 35 HOH HOH . 
G 3 HOH A 89 689 134 HOH HOH . 
G 3 HOH A 90 690 54 HOH HOH . 
G 3 HOH A 91 691 184 HOH HOH . 
H 3 HOH B 1 601 158 HOH HOH . 
H 3 HOH B 2 602 26 HOH HOH . 
H 3 HOH B 3 603 92 HOH HOH . 
H 3 HOH B 4 604 49 HOH HOH . 
H 3 HOH B 5 605 100 HOH HOH . 
H 3 HOH B 6 606 147 HOH HOH . 
H 3 HOH B 7 607 112 HOH HOH . 
H 3 HOH B 8 608 41 HOH HOH . 
H 3 HOH B 9 609 25 HOH HOH . 
H 3 HOH B 10 610 4 HOH HOH . 
H 3 HOH B 11 611 64 HOH HOH . 
H 3 HOH B 12 612 187 HOH HOH . 
H 3 HOH B 13 613 75 HOH HOH . 
H 3 HOH B 14 614 83 HOH HOH . 
H 3 HOH B 15 615 74 HOH HOH . 
H 3 HOH B 16 616 141 HOH HOH . 
H 3 HOH B 17 617 44 HOH HOH . 
H 3 HOH B 18 618 76 HOH HOH . 
H 3 HOH B 19 619 13 HOH HOH . 
H 3 HOH B 20 620 50 HOH HOH . 
H 3 HOH B 21 621 129 HOH HOH . 
H 3 HOH B 22 622 9 HOH HOH . 
H 3 HOH B 23 623 186 HOH HOH . 
H 3 HOH B 24 624 3 HOH HOH . 
H 3 HOH B 25 625 176 HOH HOH . 
H 3 HOH B 26 626 127 HOH HOH . 
H 3 HOH B 27 627 6 HOH HOH . 
H 3 HOH B 28 628 170 HOH HOH . 
H 3 HOH B 29 629 67 HOH HOH . 
H 3 HOH B 30 630 123 HOH HOH . 
H 3 HOH B 31 631 1 HOH HOH . 
H 3 HOH B 32 632 185 HOH HOH . 
H 3 HOH B 33 633 137 HOH HOH . 
H 3 HOH B 34 634 167 HOH HOH . 
H 3 HOH B 35 635 148 HOH HOH . 
H 3 HOH B 36 636 162 HOH HOH . 
H 3 HOH B 37 637 103 HOH HOH . 
H 3 HOH B 38 638 136 HOH HOH . 
H 3 HOH B 39 639 40 HOH HOH . 
H 3 HOH B 40 640 61 HOH HOH . 
H 3 HOH B 41 641 30 HOH HOH . 
H 3 HOH B 42 642 151 HOH HOH . 
H 3 HOH B 43 643 119 HOH HOH . 
H 3 HOH B 44 644 23 HOH HOH . 
H 3 HOH B 45 645 15 HOH HOH . 
H 3 HOH B 46 646 97 HOH HOH . 
H 3 HOH B 47 647 84 HOH HOH . 
H 3 HOH B 48 648 125 HOH HOH . 
H 3 HOH B 49 649 108 HOH HOH . 
H 3 HOH B 50 650 72 HOH HOH . 
H 3 HOH B 51 651 85 HOH HOH . 
H 3 HOH B 52 652 17 HOH HOH . 
H 3 HOH B 53 653 7 HOH HOH . 
H 3 HOH B 54 654 58 HOH HOH . 
H 3 HOH B 55 655 173 HOH HOH . 
H 3 HOH B 56 656 70 HOH HOH . 
H 3 HOH B 57 657 20 HOH HOH . 
H 3 HOH B 58 658 60 HOH HOH . 
H 3 HOH B 59 659 114 HOH HOH . 
H 3 HOH B 60 660 43 HOH HOH . 
H 3 HOH B 61 661 93 HOH HOH . 
H 3 HOH B 62 662 18 HOH HOH . 
H 3 HOH B 63 663 55 HOH HOH . 
H 3 HOH B 64 664 47 HOH HOH . 
H 3 HOH B 65 665 5 HOH HOH . 
H 3 HOH B 66 666 27 HOH HOH . 
H 3 HOH B 67 667 126 HOH HOH . 
H 3 HOH B 68 668 113 HOH HOH . 
H 3 HOH B 69 669 105 HOH HOH . 
H 3 HOH B 70 670 73 HOH HOH . 
H 3 HOH B 71 671 120 HOH HOH . 
H 3 HOH B 72 672 139 HOH HOH . 
H 3 HOH B 73 673 115 HOH HOH . 
H 3 HOH B 74 674 110 HOH HOH . 
H 3 HOH B 75 675 79 HOH HOH . 
H 3 HOH B 76 676 128 HOH HOH . 
H 3 HOH B 77 677 165 HOH HOH . 
H 3 HOH B 78 678 142 HOH HOH . 
H 3 HOH B 79 679 130 HOH HOH . 
H 3 HOH B 80 680 91 HOH HOH . 
H 3 HOH B 81 681 149 HOH HOH . 
H 3 HOH B 82 682 189 HOH HOH . 
H 3 HOH B 83 683 179 HOH HOH . 
H 3 HOH B 84 684 188 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 2 35.721 22.809 29.427 1 30.64 ? C1 GOL 502 B 1 
HETATM 2 O O1 GOL . . . F 2 36.258 24.008 28.901 1 32.29 ? O1 GOL 502 B 1 
HETATM 3 C C2 GOL . . . F 2 36.788 21.712 29.444 1 25.83 ? C2 GOL 502 B 1 
HETATM 4 O O2 GOL . . . F 2 38.081 22.272 29.537 1 39.88 ? O2 GOL 502 B 1 
HETATM 5 C C3 GOL . . . F 2 36.707 20.832 28.212 1 26.15 ? C3 GOL 502 B 1 
HETATM 6 O O3 GOL . . . F 2 36.369 21.601 27.084 1 38.9 ? O3 GOL 502 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           506 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#