data_5HBH # _model_server_result.job_id oDhpk2gYd0WywphPh98uzw _model_server_result.datetime_utc '2024-12-17 12:36:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5HBH # _exptl.entry_id 5HBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.046 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[5-chloranyl-4-[1-(2-methoxyethyl)-1,8-diazaspiro[4.5]decan-8-yl]pyridin-3-yl]-1-methyl-3~{H}-2,1-benzothiazole 2,2-dioxide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HBH _cell.length_a 70.143 _cell.length_b 70.663 _cell.length_c 169.467 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H31 Cl N4 O3 S' _chem_comp.formula_weight 491.046 _chem_comp.id 5Y7 _chem_comp.mon_nstd_flag . _chem_comp.name '5-[5-chloranyl-4-[1-(2-methoxyethyl)-1,8-diazaspiro[4.5]decan-8-yl]pyridin-3-yl]-1-methyl-3~{H}-2,1-benzothiazole 2,2-dioxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 5Y7 sing 1 n n C3 C4 5Y7 sing 2 n n C3 O2 5Y7 sing 3 n n C4 N5 5Y7 sing 4 n n C6 C7 5Y7 sing 5 n n C6 N5 5Y7 sing 6 n n C7 C8 5Y7 sing 7 n n C8 C9 5Y7 sing 8 n n C11 C10 5Y7 sing 9 n n C11 N12 5Y7 sing 10 n n C15 C16 5Y7 doub 11 n y C15 C21 5Y7 sing 12 n y C15 N12 5Y7 sing 13 n n C16 C18 5Y7 sing 14 n y C16 CL 5Y7 sing 15 n n C18 N19 5Y7 doub 16 n y C21 C20 5Y7 doub 17 n y C21 C22 5Y7 sing 18 n n C23 C24 5Y7 sing 19 n y C23 C22 5Y7 doub 20 n y C24 C31 5Y7 doub 21 n y C24 C25 5Y7 sing 22 n n O28 S26 5Y7 doub 23 n n C30 N29 5Y7 sing 24 n n C31 C32 5Y7 sing 25 n y C31 N29 5Y7 sing 26 n n C32 C33 5Y7 doub 27 n y C33 C22 5Y7 sing 28 n y N5 C9 5Y7 sing 29 n n C9 C10 5Y7 sing 30 n n C9 C14 5Y7 sing 31 n n N12 C13 5Y7 sing 32 n n C13 C14 5Y7 sing 33 n n N19 C20 5Y7 sing 34 n y C25 S26 5Y7 sing 35 n n S26 O27 5Y7 doub 36 n n S26 N29 5Y7 sing 37 n n C1 H1 5Y7 sing 38 n n C1 H2 5Y7 sing 39 n n C1 H3 5Y7 sing 40 n n C3 H4 5Y7 sing 41 n n C3 H5 5Y7 sing 42 n n C4 H6 5Y7 sing 43 n n C4 H7 5Y7 sing 44 n n C6 H8 5Y7 sing 45 n n C6 H9 5Y7 sing 46 n n C7 H10 5Y7 sing 47 n n C7 H11 5Y7 sing 48 n n C8 H12 5Y7 sing 49 n n C8 H13 5Y7 sing 50 n n C11 H14 5Y7 sing 51 n n C11 H15 5Y7 sing 52 n n C18 H16 5Y7 sing 53 n n C23 H17 5Y7 sing 54 n n C30 H19 5Y7 sing 55 n n C30 H20 5Y7 sing 56 n n C30 H21 5Y7 sing 57 n n C32 H22 5Y7 sing 58 n n C33 H23 5Y7 sing 59 n n C10 H25 5Y7 sing 60 n n C10 H26 5Y7 sing 61 n n C13 H27 5Y7 sing 62 n n C13 H28 5Y7 sing 63 n n C14 H29 5Y7 sing 64 n n C14 H30 5Y7 sing 65 n n C20 H31 5Y7 sing 66 n n C25 H33 5Y7 sing 67 n n C25 H34 5Y7 sing 68 n n # _atom_sites.entry_id 5HBH _atom_sites.fract_transf_matrix[1][1] 0.014257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 5Y7 A 1 401 1 5Y7 INX . D 4 EDO A 1 402 1 EDO EDO . E 5 FMT A 1 403 2 FMT FMT . F 5 FMT B 1 301 3 FMT FMT . G 5 FMT B 1 302 4 FMT FMT . H 6 HOH A 1 501 4 HOH HOH . H 6 HOH A 2 502 15 HOH HOH . H 6 HOH A 3 503 2 HOH HOH . H 6 HOH A 4 504 6 HOH HOH . H 6 HOH A 5 505 16 HOH HOH . H 6 HOH A 6 506 9 HOH HOH . H 6 HOH A 7 507 8 HOH HOH . H 6 HOH A 8 508 1 HOH HOH . H 6 HOH A 9 509 17 HOH HOH . I 6 HOH B 1 401 21 HOH HOH . I 6 HOH B 2 402 10 HOH HOH . I 6 HOH B 3 403 11 HOH HOH . I 6 HOH B 4 404 20 HOH HOH . I 6 HOH B 5 405 3 HOH HOH . I 6 HOH B 6 406 7 HOH HOH . I 6 HOH B 7 407 14 HOH HOH . I 6 HOH B 8 408 18 HOH HOH . I 6 HOH B 9 409 13 HOH HOH . I 6 HOH B 10 410 19 HOH HOH . I 6 HOH B 11 411 12 HOH HOH . I 6 HOH B 12 412 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5Y7 . . . C 3 3.655 18.315 15.844 1 66.53 ? C1 5Y7 401 A 1 HETATM 2 C C3 5Y7 . . . C 3 4.303 17.462 13.759 1 70.29 ? C3 5Y7 401 A 1 HETATM 3 C C4 5Y7 . . . C 3 4.824 16.278 12.937 1 69.34 ? C4 5Y7 401 A 1 HETATM 4 C C6 5Y7 . . . C 3 2.72 15.887 11.649 1 61.57 ? C6 5Y7 401 A 1 HETATM 5 C C7 5Y7 . . . C 3 1.991 14.643 11.079 1 56.09 ? C7 5Y7 401 A 1 HETATM 6 C C8 5Y7 . . . C 3 3.219 13.808 10.625 1 51.25 ? C8 5Y7 401 A 1 HETATM 7 C C11 5Y7 . . . C 3 6.183 13.263 10.118 1 55.63 ? C11 5Y7 401 A 1 HETATM 8 C C15 5Y7 . . . C 3 6.919 10.878 10.364 1 71.04 ? C15 5Y7 401 A 1 HETATM 9 C C16 5Y7 . . . C 3 7.875 10.25 11.208 1 68.67 ? C16 5Y7 401 A 1 HETATM 10 C C18 5Y7 . . . C 3 8.603 9.17 10.714 1 60.38 ? C18 5Y7 401 A 1 HETATM 11 C C21 5Y7 . . . C 3 6.745 10.323 9.051 1 58.16 ? C21 5Y7 401 A 1 HETATM 12 C C23 5Y7 . . . C 3 4.381 10.715 8.137 1 52.3 ? C23 5Y7 401 A 1 HETATM 13 C C24 5Y7 . . . C 3 3.543 11.353 7.22 1 47.89 ? C24 5Y7 401 A 1 HETATM 14 O O28 5Y7 . . . C 3 0.669 13.073 5.496 1 60.7 ? O28 5Y7 401 A 1 HETATM 15 C C30 5Y7 . . . C 3 3.36 13.352 4.058 1 54.52 ? C30 5Y7 401 A 1 HETATM 16 C C31 5Y7 . . . C 3 4.073 12.209 6.271 1 53.05 ? C31 5Y7 401 A 1 HETATM 17 C C32 5Y7 . . . C 3 5.462 12.436 6.259 1 54.89 ? C32 5Y7 401 A 1 HETATM 18 C C33 5Y7 . . . C 3 6.294 11.807 7.149 1 57.53 ? C33 5Y7 401 A 1 HETATM 19 O O2 5Y7 . . . C 3 3.889 17.13 15.077 1 87.82 ? O2 5Y7 401 A 1 HETATM 20 N N5 5Y7 . . . C 3 3.827 15.303 12.435 1 54.3 ? N5 5Y7 401 A 1 HETATM 21 C C9 5Y7 . . . C 3 4.336 14.147 11.649 1 54.79 ? C9 5Y7 401 A 1 HETATM 22 C C10 5Y7 . . . C 3 5.672 14.432 10.956 1 62.4 ? C10 5Y7 401 A 1 HETATM 23 N N12 5Y7 . . . C 3 6.119 11.964 10.793 1 56.93 ? N12 5Y7 401 A 1 HETATM 24 C C13 5Y7 . . . C 3 5.134 11.723 11.871 1 66.34 ? C13 5Y7 401 A 1 HETATM 25 C C14 5Y7 . . . C 3 4.604 12.974 12.585 1 56.96 ? C14 5Y7 401 A 1 HETATM 26 CL CL 5Y7 . . . C 3 8.213 10.769 12.844 1 76.5 ? CL 5Y7 401 A 1 HETATM 27 N N19 5Y7 . . . C 3 8.419 8.705 9.485 1 55.99 ? N19 5Y7 401 A 1 HETATM 28 C C20 5Y7 . . . C 3 7.538 9.245 8.652 1 52.01 ? C20 5Y7 401 A 1 HETATM 29 C C22 5Y7 . . . C 3 5.771 10.926 8.1 1 58.97 ? C22 5Y7 401 A 1 HETATM 30 C C25 5Y7 . . . C 3 2.029 11.273 7.038 1 46.13 ? C25 5Y7 401 A 1 HETATM 31 S S26 5Y7 . . . C 3 1.799 12.942 6.349 1 56.7 ? S26 5Y7 401 A 1 HETATM 32 O O27 5Y7 . . . C 3 2.143 13.929 7.314 1 48.01 ? O27 5Y7 401 A 1 HETATM 33 N N29 5Y7 . . . C 3 3.158 12.839 5.417 1 56.16 ? N29 5Y7 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 33 #