data_5HBJ # _model_server_result.job_id 11twC22xUnrvGIdZtPta1A _model_server_result.datetime_utc '2024-12-17 12:33:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hbj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5HBJ # _exptl.entry_id 5HBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.9 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-[2-azanyl-3-chloranyl-5-(1-methylindazol-5-yl)pyridin-4-yl]-2,8-diazaspiro[4.5]decan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HBJ _cell.length_a 70.749 _cell.length_b 71.774 _cell.length_c 176.434 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H23 Cl N6 O' _chem_comp.formula_weight 410.9 _chem_comp.id 5Y8 _chem_comp.mon_nstd_flag . _chem_comp.name 8-[2-azanyl-3-chloranyl-5-(1-methylindazol-5-yl)pyridin-4-yl]-2,8-diazaspiro[4.5]decan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O27 C26 5Y8 doub 1 n n N25 C26 5Y8 sing 2 n n N25 C24 5Y8 sing 3 n n C26 C22 5Y8 sing 4 n n CL C16 5Y8 sing 5 n n C21 C22 5Y8 sing 6 n n C21 C20 5Y8 sing 7 n n C24 C23 5Y8 sing 8 n n C22 C28 5Y8 sing 9 n n C22 C23 5Y8 sing 10 n n N15 C14 5Y8 sing 11 n n C20 N19 5Y8 sing 12 n n C28 C29 5Y8 sing 13 n n C16 C14 5Y8 doub 14 n y C16 C18 5Y8 sing 15 n y C14 N13 5Y8 sing 16 n y N19 C18 5Y8 sing 17 n n N19 C29 5Y8 sing 18 n n C18 C11 5Y8 doub 19 n y N13 C12 5Y8 doub 20 n y C11 C12 5Y8 sing 21 n y C11 C7 5Y8 sing 22 n n C6 C7 5Y8 doub 23 n y C6 C5 5Y8 sing 24 n y C7 C8 5Y8 sing 25 n y C5 C4 5Y8 sing 26 n y C5 C10 5Y8 doub 27 n y C8 C9 5Y8 doub 28 n y C4 N3 5Y8 doub 29 n y C10 C9 5Y8 sing 30 n y C10 N2 5Y8 sing 31 n y N3 N2 5Y8 sing 32 n y N2 C1 5Y8 sing 33 n n C1 H1 5Y8 sing 34 n n C1 H2 5Y8 sing 35 n n C1 H3 5Y8 sing 36 n n C4 H4 5Y8 sing 37 n n C6 H5 5Y8 sing 38 n n C8 H6 5Y8 sing 39 n n C12 H7 5Y8 sing 40 n n C21 H8 5Y8 sing 41 n n C21 H9 5Y8 sing 42 n n C23 H10 5Y8 sing 43 n n C23 H11 5Y8 sing 44 n n C24 H12 5Y8 sing 45 n n C24 H13 5Y8 sing 46 n n C9 H14 5Y8 sing 47 n n N15 H15 5Y8 sing 48 n n N15 H16 5Y8 sing 49 n n C20 H17 5Y8 sing 50 n n C20 H18 5Y8 sing 51 n n N25 H19 5Y8 sing 52 n n C28 H20 5Y8 sing 53 n n C28 H21 5Y8 sing 54 n n C29 H22 5Y8 sing 55 n n C29 H23 5Y8 sing 56 n n # _atom_sites.entry_id 5HBJ _atom_sites.fract_transf_matrix[1][1] 0.014134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 5Y8 A 1 401 1 5Y8 INX . D 4 EDO A 1 402 2 EDO EDO . E 5 FMT B 1 301 1 FMT FMT . F 6 HOH A 1 501 3 HOH HOH . F 6 HOH A 2 502 19 HOH HOH . F 6 HOH A 3 503 20 HOH HOH . F 6 HOH A 4 504 21 HOH HOH . F 6 HOH A 5 505 12 HOH HOH . F 6 HOH A 6 506 23 HOH HOH . F 6 HOH A 7 507 18 HOH HOH . F 6 HOH A 8 508 4 HOH HOH . F 6 HOH A 9 509 6 HOH HOH . F 6 HOH A 10 510 1 HOH HOH . F 6 HOH A 11 511 2 HOH HOH . F 6 HOH A 12 512 5 HOH HOH . F 6 HOH A 13 513 24 HOH HOH . G 6 HOH B 1 401 11 HOH HOH . G 6 HOH B 2 402 10 HOH HOH . G 6 HOH B 3 403 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5Y8 . . . C 3 -3.328 13.966 -5.292 1 57.11 ? C1 5Y8 401 A 1 HETATM 2 C C4 5Y8 . . . C 3 -1.913 12.352 -8.205 1 56.16 ? C4 5Y8 401 A 1 HETATM 3 C C5 5Y8 . . . C 3 -3.331 12.111 -8.443 1 56.45 ? C5 5Y8 401 A 1 HETATM 4 C C6 5Y8 . . . C 3 -4.056 11.461 -9.457 1 57.36 ? C6 5Y8 401 A 1 HETATM 5 C C7 5Y8 . . . C 3 -5.446 11.411 -9.39 1 57.78 ? C7 5Y8 401 A 1 HETATM 6 C C8 5Y8 . . . C 3 -6.119 11.999 -8.308 1 58.57 ? C8 5Y8 401 A 1 HETATM 7 C C11 5Y8 . . . C 3 -6.227 10.727 -10.451 1 58.61 ? C11 5Y8 401 A 1 HETATM 8 C C12 5Y8 . . . C 3 -7.005 9.63 -10.087 1 57.78 ? C12 5Y8 401 A 1 HETATM 9 N N13 5Y8 . . . C 3 -7.724 8.966 -10.974 1 55.98 ? N13 5Y8 401 A 1 HETATM 10 C C16 5Y8 . . . C 3 -7 10.401 -12.714 1 58.55 ? C16 5Y8 401 A 1 HETATM 11 C C18 5Y8 . . . C 3 -6.22 11.137 -11.809 1 59.82 ? C18 5Y8 401 A 1 HETATM 12 C C21 5Y8 . . . C 3 -4.237 13.097 -14.217 1 66.42 ? C21 5Y8 401 A 1 HETATM 13 C C23 5Y8 . . . C 3 -3.238 14.978 -12.83 1 72.25 ? C23 5Y8 401 A 1 HETATM 14 C C24 5Y8 . . . C 3 -2.359 15.664 -13.898 1 74.48 ? C24 5Y8 401 A 1 HETATM 15 N N2 5Y8 . . . C 3 -3.067 13.249 -6.542 1 54.61 ? N2 5Y8 401 A 1 HETATM 16 N N3 5Y8 . . . C 3 -1.806 13.018 -7.093 1 55.37 ? N3 5Y8 401 A 1 HETATM 17 C C9 5Y8 . . . C 3 -5.419 12.629 -7.314 1 59.68 ? C9 5Y8 401 A 1 HETATM 18 C C10 5Y8 . . . C 3 -4.018 12.7 -7.359 1 57.23 ? C10 5Y8 401 A 1 HETATM 19 C C14 5Y8 . . . C 3 -7.741 9.315 -12.256 1 57.69 ? C14 5Y8 401 A 1 HETATM 20 N N15 5Y8 . . . C 3 -8.516 8.585 -13.148 1 61.61 ? N15 5Y8 401 A 1 HETATM 21 CL CL 5Y8 . . . C 3 -7.077 10.807 -14.398 1 59.72 ? CL 5Y8 401 A 1 HETATM 22 N N19 5Y8 . . . C 3 -5.459 12.23 -12.219 1 62.46 ? N19 5Y8 401 A 1 HETATM 23 C C20 5Y8 . . . C 3 -4.293 12.037 -13.101 1 65.18 ? C20 5Y8 401 A 1 HETATM 24 C C22 5Y8 . . . C 3 -4.444 14.509 -13.677 1 70.09 ? C22 5Y8 401 A 1 HETATM 25 N N25 5Y8 . . . C 3 -3.302 16.133 -14.917 1 76.18 ? N25 5Y8 401 A 1 HETATM 26 C C26 5Y8 . . . C 3 -4.486 15.496 -14.817 1 74.69 ? C26 5Y8 401 A 1 HETATM 27 O O27 5Y8 . . . C 3 -5.442 15.694 -15.54 1 78.55 ? O27 5Y8 401 A 1 HETATM 28 C C28 5Y8 . . . C 3 -5.752 14.592 -12.892 1 68.67 ? C28 5Y8 401 A 1 HETATM 29 C C29 5Y8 . . . C 3 -5.785 13.582 -11.733 1 65.53 ? C29 5Y8 401 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #