data_5HBN # _model_server_result.job_id Cye_c8S6dsPHUyx6kJtM1g _model_server_result.datetime_utc '2024-10-19 11:51:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hbn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 5HBN # _exptl.entry_id 5HBN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 254.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description phospho-arginine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HBN _cell.length_a 84.6 _cell.length_b 84.6 _cell.length_c 29.85 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HBN _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # _chem_comp.formula 'C6 H15 N4 O5 P' _chem_comp.formula_weight 254.181 _chem_comp.id RPI _chem_comp.mon_nstd_flag n _chem_comp.name phospho-arginine _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2P P RPI doub 270 n n NH2 P RPI sing 271 n n NH2 CZ RPI sing 272 n n O1P P RPI sing 273 n n NH1 CZ RPI doub 274 n n P O3P RPI sing 275 n n CZ NE RPI sing 276 n n NE CD RPI sing 277 n n CD CG RPI sing 278 n n CG CB RPI sing 279 n n CB CA RPI sing 280 n n CA C RPI sing 281 n n CA N RPI sing 282 n n O C RPI doub 283 n n C OXT RPI sing 284 n n N H RPI sing 285 n n N H2 RPI sing 286 n n CA HA RPI sing 287 n n CB H5 RPI sing 288 n n CB H6 RPI sing 289 n n CG H7 RPI sing 290 n n CG H8 RPI sing 291 n n CD H9 RPI sing 292 n n CD H10 RPI sing 293 n n NE H11 RPI sing 294 n n NH1 H12 RPI sing 295 n n NH2 H14 RPI sing 296 n n O1P H15 RPI sing 297 n n O3P H16 RPI sing 298 n n OXT HXT RPI sing 299 n n # _atom_sites.entry_id 5HBN _atom_sites.fract_transf_matrix[1][1] 0.01182 _atom_sites.fract_transf_matrix[1][2] 0.006824 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.033501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 2 SO4 SO4 . C 2 SO4 A 1 202 5 SO4 SO4 . D 2 SO4 A 1 203 6 SO4 SO4 . E 2 SO4 A 1 204 7 SO4 SO4 . F 2 SO4 A 1 205 8 SO4 SO4 . G 3 RPI A 1 206 1 RPI LIG . H 3 RPI A 1 207 2 RPI LIG . I 4 ACT A 1 208 1 ACT ACT . J 5 HOH A 1 301 13 HOH HOH . J 5 HOH A 2 302 33 HOH HOH . J 5 HOH A 3 303 28 HOH HOH . J 5 HOH A 4 304 23 HOH HOH . J 5 HOH A 5 305 10 HOH HOH . J 5 HOH A 6 306 12 HOH HOH . J 5 HOH A 7 307 25 HOH HOH . J 5 HOH A 8 308 30 HOH HOH . J 5 HOH A 9 309 3 HOH HOH . J 5 HOH A 10 310 4 HOH HOH . J 5 HOH A 11 311 22 HOH HOH . J 5 HOH A 12 312 15 HOH HOH . J 5 HOH A 13 313 29 HOH HOH . J 5 HOH A 14 314 8 HOH HOH . J 5 HOH A 15 315 18 HOH HOH . J 5 HOH A 16 316 11 HOH HOH . J 5 HOH A 17 317 31 HOH HOH . J 5 HOH A 18 318 24 HOH HOH . J 5 HOH A 19 319 26 HOH HOH . J 5 HOH A 20 320 16 HOH HOH . J 5 HOH A 21 321 6 HOH HOH . J 5 HOH A 22 322 1 HOH HOH . J 5 HOH A 23 323 7 HOH HOH . J 5 HOH A 24 324 40 HOH HOH . J 5 HOH A 25 325 19 HOH HOH . J 5 HOH A 26 326 21 HOH HOH . J 5 HOH A 27 327 2 HOH HOH . J 5 HOH A 28 328 20 HOH HOH . J 5 HOH A 29 329 34 HOH HOH . J 5 HOH A 30 330 17 HOH HOH . J 5 HOH A 31 331 32 HOH HOH . J 5 HOH A 32 332 27 HOH HOH . J 5 HOH A 33 333 9 HOH HOH . J 5 HOH A 34 334 14 HOH HOH . J 5 HOH A 35 335 37 HOH HOH . J 5 HOH A 36 336 5 HOH HOH . J 5 HOH A 37 337 38 HOH HOH . J 5 HOH A 38 338 36 HOH HOH . J 5 HOH A 39 339 35 HOH HOH . J 5 HOH A 40 340 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P RPI . . . G 3 22.189 27.497 8.383 1 19.96 ? P RPI 206 A 1 HETATM 2 N N RPI . . . G 3 25.412 26.262 15.292 1 57.67 ? N RPI 206 A 1 HETATM 3 C CA RPI . . . G 3 25.423 27.432 14.466 1 61.01 ? CA RPI 206 A 1 HETATM 4 C CB RPI . . . G 3 24.616 27.144 13.222 1 52.85 ? CB RPI 206 A 1 HETATM 5 C CG RPI . . . G 3 25.4 26.278 12.268 1 49.67 ? CG RPI 206 A 1 HETATM 6 C CD RPI . . . G 3 25.849 27.079 11.074 1 42.46 ? CD RPI 206 A 1 HETATM 7 N NE RPI . . . G 3 24.732 27.244 10.209 1 25.83 ? NE RPI 206 A 1 HETATM 8 C CZ RPI . . . G 3 24.89 27.234 8.816 1 21.81 ? CZ RPI 206 A 1 HETATM 9 N NH1 RPI . . . G 3 26.081 27.077 8.323 1 26.43 ? NH1 RPI 206 A 1 HETATM 10 N NH2 RPI . . . G 3 23.773 27.368 7.936 1 19.24 ? NH2 RPI 206 A 1 HETATM 11 O O1P RPI . . . G 3 21.547 26.16 8.069 1 20.53 ? O1P RPI 206 A 1 HETATM 12 O O2P RPI . . . G 3 21.608 28.557 7.481 1 21.56 ? O2P RPI 206 A 1 HETATM 13 O O3P RPI . . . G 3 22.019 27.842 9.833 1 24 ? O3P RPI 206 A 1 HETATM 14 C C RPI . . . G 3 24.851 28.653 15.162 1 53.09 ? C RPI 206 A 1 HETATM 15 O O RPI . . . G 3 23.752 29.168 14.789 1 40.56 ? O RPI 206 A 1 HETATM 16 O OXT RPI . . . G 3 25.498 29.178 16.105 1 44.9 ? OXT RPI 206 A 1 HETATM 17 H H2 RPI . . . G 3 24.765 26.348 15.934 1 69.2 ? H2 RPI 206 A 1 HETATM 18 H H RPI . . . G 3 26.23 26.164 15.693 1 69.2 ? H RPI 206 A 1 HETATM 19 H HA RPI . . . G 3 26.346 27.623 14.205 1 73.21 ? HA RPI 206 A 1 HETATM 20 H H5 RPI . . . G 3 24.392 27.988 12.782 1 63.42 ? H5 RPI 206 A 1 HETATM 21 H H6 RPI . . . G 3 23.792 26.682 13.473 1 63.42 ? H6 RPI 206 A 1 HETATM 22 H H7 RPI . . . G 3 26.184 25.919 12.729 1 59.6 ? H7 RPI 206 A 1 HETATM 23 H H8 RPI . . . G 3 24.836 25.539 11.967 1 59.6 ? H8 RPI 206 A 1 HETATM 24 H H9 RPI . . . G 3 26.563 26.6 10.604 1 50.95 ? H9 RPI 206 A 1 HETATM 25 H H10 RPI . . . G 3 26.174 27.955 11.366 1 50.95 ? H10 RPI 206 A 1 HETATM 26 H H11 RPI . . . G 3 23.894 27.311 10.565 1 30.99 ? H11 RPI 206 A 1 HETATM 27 H H12 RPI . . . G 3 26.206 27.091 7.417 1 31.72 ? H12 RPI 206 A 1 HETATM 28 H H14 RPI . . . G 3 23.948 27.341 7.041 1 23.08 ? H14 RPI 206 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 28 #