data_5HBN # _model_server_result.job_id tQ7OQomKCXLrWTbxh2ipzg _model_server_result.datetime_utc '2024-10-19 11:47:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hbn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 5HBN # _exptl.entry_id 5HBN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 254.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description phospho-arginine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HBN _cell.length_a 84.6 _cell.length_b 84.6 _cell.length_c 29.85 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HBN _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # _chem_comp.formula 'C6 H15 N4 O5 P' _chem_comp.formula_weight 254.181 _chem_comp.id RPI _chem_comp.mon_nstd_flag n _chem_comp.name phospho-arginine _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2P P RPI doub 270 n n NH2 P RPI sing 271 n n NH2 CZ RPI sing 272 n n O1P P RPI sing 273 n n NH1 CZ RPI doub 274 n n P O3P RPI sing 275 n n CZ NE RPI sing 276 n n NE CD RPI sing 277 n n CD CG RPI sing 278 n n CG CB RPI sing 279 n n CB CA RPI sing 280 n n CA C RPI sing 281 n n CA N RPI sing 282 n n O C RPI doub 283 n n C OXT RPI sing 284 n n N H RPI sing 285 n n N H2 RPI sing 286 n n CA HA RPI sing 287 n n CB H5 RPI sing 288 n n CB H6 RPI sing 289 n n CG H7 RPI sing 290 n n CG H8 RPI sing 291 n n CD H9 RPI sing 292 n n CD H10 RPI sing 293 n n NE H11 RPI sing 294 n n NH1 H12 RPI sing 295 n n NH2 H14 RPI sing 296 n n O1P H15 RPI sing 297 n n O3P H16 RPI sing 298 n n OXT HXT RPI sing 299 n n # _atom_sites.entry_id 5HBN _atom_sites.fract_transf_matrix[1][1] 0.01182 _atom_sites.fract_transf_matrix[1][2] 0.006824 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.033501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 2 SO4 SO4 . C 2 SO4 A 1 202 5 SO4 SO4 . D 2 SO4 A 1 203 6 SO4 SO4 . E 2 SO4 A 1 204 7 SO4 SO4 . F 2 SO4 A 1 205 8 SO4 SO4 . G 3 RPI A 1 206 1 RPI LIG . H 3 RPI A 1 207 2 RPI LIG . I 4 ACT A 1 208 1 ACT ACT . J 5 HOH A 1 301 13 HOH HOH . J 5 HOH A 2 302 33 HOH HOH . J 5 HOH A 3 303 28 HOH HOH . J 5 HOH A 4 304 23 HOH HOH . J 5 HOH A 5 305 10 HOH HOH . J 5 HOH A 6 306 12 HOH HOH . J 5 HOH A 7 307 25 HOH HOH . J 5 HOH A 8 308 30 HOH HOH . J 5 HOH A 9 309 3 HOH HOH . J 5 HOH A 10 310 4 HOH HOH . J 5 HOH A 11 311 22 HOH HOH . J 5 HOH A 12 312 15 HOH HOH . J 5 HOH A 13 313 29 HOH HOH . J 5 HOH A 14 314 8 HOH HOH . J 5 HOH A 15 315 18 HOH HOH . J 5 HOH A 16 316 11 HOH HOH . J 5 HOH A 17 317 31 HOH HOH . J 5 HOH A 18 318 24 HOH HOH . J 5 HOH A 19 319 26 HOH HOH . J 5 HOH A 20 320 16 HOH HOH . J 5 HOH A 21 321 6 HOH HOH . J 5 HOH A 22 322 1 HOH HOH . J 5 HOH A 23 323 7 HOH HOH . J 5 HOH A 24 324 40 HOH HOH . J 5 HOH A 25 325 19 HOH HOH . J 5 HOH A 26 326 21 HOH HOH . J 5 HOH A 27 327 2 HOH HOH . J 5 HOH A 28 328 20 HOH HOH . J 5 HOH A 29 329 34 HOH HOH . J 5 HOH A 30 330 17 HOH HOH . J 5 HOH A 31 331 32 HOH HOH . J 5 HOH A 32 332 27 HOH HOH . J 5 HOH A 33 333 9 HOH HOH . J 5 HOH A 34 334 14 HOH HOH . J 5 HOH A 35 335 37 HOH HOH . J 5 HOH A 36 336 5 HOH HOH . J 5 HOH A 37 337 38 HOH HOH . J 5 HOH A 38 338 36 HOH HOH . J 5 HOH A 39 339 35 HOH HOH . J 5 HOH A 40 340 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P RPI . A . H 3 11.071 16.705 -8.956 0.25 19.85 ? P RPI 207 A 1 HETATM 2 P P RPI . B . H 3 11.116 16.745 -8.814 0.75 19.37 ? P RPI 207 A 1 HETATM 3 N N RPI . A . H 3 9.388 17.623 -13.836 0.25 33.52 ? N RPI 207 A 1 HETATM 4 N N RPI . B . H 3 7.145 11.276 -8.15 0.75 57.05 ? N RPI 207 A 1 HETATM 5 C CA RPI . A . H 3 9.137 16.244 -13.589 0.25 34.59 ? CA RPI 207 A 1 HETATM 6 C CA RPI . B . H 3 8.204 11.247 -9.098 0.75 38.67 ? CA RPI 207 A 1 HETATM 7 C CB RPI . A . H 3 7.745 16.042 -13.046 0.25 32.75 ? CB RPI 207 A 1 HETATM 8 C CB RPI . B . H 3 8.552 12.662 -9.476 0.75 39.09 ? CB RPI 207 A 1 HETATM 9 C CG RPI . A . H 3 7.643 14.725 -12.304 0.25 28.07 ? CG RPI 207 A 1 HETATM 10 C CG RPI . B . H 3 7.276 13.441 -9.661 0.75 40.82 ? CG RPI 207 A 1 HETATM 11 C CD RPI . A . H 3 7.398 14.928 -10.826 0.25 31.84 ? CD RPI 207 A 1 HETATM 12 C CD RPI . B . H 3 7.401 14.791 -10.289 0.75 32.18 ? CD RPI 207 A 1 HETATM 13 N NE RPI . A . H 3 8.531 15.534 -10.208 0.25 27.21 ? NE RPI 207 A 1 HETATM 14 N NE RPI . B . H 3 8.522 15.458 -9.765 0.75 23.86 ? NE RPI 207 A 1 HETATM 15 C CZ RPI . A . H 3 8.375 16.596 -9.281 0.25 22.74 ? CZ RPI 207 A 1 HETATM 16 C CZ RPI . B . H 3 8.373 16.656 -9.062 0.75 22.12 ? CZ RPI 207 A 1 HETATM 17 N NH1 RPI . A . H 3 7.182 17.045 -8.983 0.25 24.38 ? NH1 RPI 207 A 1 HETATM 18 N NH1 RPI . B . H 3 7.174 17.143 -8.836 0.75 24.4 ? NH1 RPI 207 A 1 HETATM 19 N NH2 RPI . A . H 3 9.511 17.197 -8.671 0.25 20.3 ? NH2 RPI 207 A 1 HETATM 20 N NH2 RPI . B . H 3 9.548 17.302 -8.613 0.75 20.41 ? NH2 RPI 207 A 1 HETATM 21 O O1P RPI . A . H 3 11.603 16.233 -7.626 0.25 19.09 ? O1P RPI 207 A 1 HETATM 22 O O1P RPI . B . H 3 11.463 16.349 -7.393 0.75 18.13 ? O1P RPI 207 A 1 HETATM 23 O O2P RPI . A . H 3 11.107 15.582 -9.964 0.25 21.6 ? O2P RPI 207 A 1 HETATM 24 O O2P RPI . B . H 3 11.19 15.596 -9.795 0.75 21.59 ? O2P RPI 207 A 1 HETATM 25 O O3P RPI . A . H 3 11.872 17.884 -9.446 0.25 20.85 ? O3P RPI 207 A 1 HETATM 26 O O3P RPI . B . H 3 11.871 17.957 -9.286 0.75 20.94 ? O3P RPI 207 A 1 HETATM 27 C C RPI . A . H 3 9.314 15.478 -14.88 0.25 38.13 ? C RPI 207 A 1 HETATM 28 C C RPI . B . H 3 9.304 10.556 -8.372 0.75 28.91 ? C RPI 207 A 1 HETATM 29 O O RPI . A . H 3 10.222 15.817 -15.684 0.25 42.88 ? O RPI 207 A 1 HETATM 30 O O RPI . B . H 3 8.973 9.785 -7.444 0.75 45.09 ? O RPI 207 A 1 HETATM 31 O OXT RPI . A . H 3 8.557 14.508 -15.156 0.25 39.54 ? OXT RPI 207 A 1 HETATM 32 O OXT RPI . B . H 3 10.516 10.766 -8.644 0.75 31.22 ? OXT RPI 207 A 1 HETATM 33 H H2 RPI . A . H 3 8.781 17.94 -14.445 0.25 40.22 ? H2 RPI 207 A 1 HETATM 34 H H2 RPI . B . H 3 6.944 10.421 -7.891 0.75 68.46 ? H2 RPI 207 A 1 HETATM 35 H H RPI . A . H 3 10.235 17.725 -14.169 0.25 40.22 ? H RPI 207 A 1 HETATM 36 H H RPI . B . H 3 7.403 11.764 -7.419 0.75 68.46 ? H RPI 207 A 1 HETATM 37 H HA RPI . A . H 3 9.784 15.915 -12.934 0.25 41.51 ? HA RPI 207 A 1 HETATM 38 H HA RPI . B . H 3 7.941 10.735 -9.888 0.75 46.4 ? HA RPI 207 A 1 HETATM 39 H H5 RPI . A . H 3 7.107 16.044 -13.787 0.25 39.29 ? H5 RPI 207 A 1 HETATM 40 H H5 RPI . B . H 3 9.086 13.07 -8.766 0.75 46.91 ? H5 RPI 207 A 1 HETATM 41 H H6 RPI . A . H 3 7.53 16.774 -12.434 0.25 39.29 ? H6 RPI 207 A 1 HETATM 42 H H6 RPI . B . H 3 9.061 12.662 -10.311 0.75 46.91 ? H6 RPI 207 A 1 HETATM 43 H H7 RPI . A . H 3 6.906 14.205 -12.68 0.25 33.69 ? H7 RPI 207 A 1 HETATM 44 H H7 RPI . B . H 3 6.862 13.554 -8.783 0.75 48.98 ? H7 RPI 207 A 1 HETATM 45 H H8 RPI . A . H 3 8.477 14.228 -12.422 0.25 33.69 ? H8 RPI 207 A 1 HETATM 46 H H8 RPI . B . H 3 6.673 12.905 -10.215 0.75 48.98 ? H8 RPI 207 A 1 HETATM 47 H H9 RPI . A . H 3 7.226 14.061 -10.405 0.25 38.21 ? H9 RPI 207 A 1 HETATM 48 H H9 RPI . B . H 3 7.505 14.691 -11.257 0.75 38.61 ? H9 RPI 207 A 1 HETATM 49 H H10 RPI . A . H 3 6.617 15.506 -10.704 0.25 38.21 ? H10 RPI 207 A 1 HETATM 50 H H10 RPI . B . H 3 6.594 15.313 -10.101 0.75 38.61 ? H10 RPI 207 A 1 HETATM 51 H H11 RPI . A . H 3 9.368 15.226 -10.403 0.25 32.66 ? H11 RPI 207 A 1 HETATM 52 H H11 RPI . B . H 3 9.359 15.132 -9.928 0.75 28.63 ? H11 RPI 207 A 1 HETATM 53 H H12 RPI . A . H 3 7.088 17.735 -8.39 0.25 29.26 ? H12 RPI 207 A 1 HETATM 54 H H12 RPI . B . H 3 7.079 17.927 -8.375 0.75 29.28 ? H12 RPI 207 A 1 HETATM 55 H H14 RPI . A . H 3 9.374 17.875 -8.077 0.25 24.36 ? H14 RPI 207 A 1 HETATM 56 H H14 RPI . B . H 3 9.44 18.067 -8.129 0.75 24.49 ? H14 RPI 207 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 56 #