data_5HBY
#
_model_server_result.job_id            IQ4zwUOz16m_rCc1xEEsvg 
_model_server_result.datetime_utc      '2024-11-08 04:38:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hby 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":103}' 
#
_entry.id    5HBY 
#
_exptl.entry_id    5HBY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          122.03 
_cell.angle_gamma         90 
_cell.entry_id            5HBY 
_cell.length_a            45.873 
_cell.length_b            31.987 
_cell.length_c            33.426 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HBY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A O3' LCC 1 A LCC 1 1_555 A P LCC 2 A LCC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.667 ? 
covale ? covale2 A O3' LCC 2 A LCC 2 1_555 A P LCC 3 A LCC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? 
covale ? covale3 A O3' LCC 3 A LCC 3 1_555 A P LCG 4 A LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.66 ? 
covale ? covale4 A O3' LCG 4 A LCG 4 1_555 A P A 5 A A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? 
metalc ? metalc1 D MG MG . A MG 103 1_555 E O HOH . A HOH 211 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc2 D MG MG . A MG 103 1_555 E O HOH . A HOH 219 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc3 D MG MG . A MG 103 1_555 E O HOH . A HOH 220 2_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc4 D MG MG . A MG 103 1_555 E O HOH . A HOH 230 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc5 D MG MG . A MG 103 1_555 E O HOH . A HOH 239 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc6 D MG MG . A MG 103 1_555 E O HOH . A HOH 263 2_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
hydrog WATSON-CRICK hydrog1 A N1 LCG 4 A LCG 4 1_555 A N3 C 13 A C 13 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N2 LCG 4 A LCG 4 1_555 A O2 C 13 A C 13 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O6 LCG 4 A LCG 4 1_555 A N4 C 13 A C 13 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 A 5 A A 5 1_555 A N3 U 12 A U 12 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N6 A 5 A A 5 1_555 A O4 U 12 A U 12 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N3 C 6 A C 6 1_555 A N1 G 11 A G 11 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N4 C 6 A C 6 1_555 A O6 G 11 A G 11 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A O2 C 6 A C 6 1_555 A N2 G 11 A G 11 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N3 U 7 A U 7 1_555 A N1 A 10 A A 10 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A O4 U 7 A U 7 1_555 A N6 A 10 A A 10 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N3 U 8 A U 8 1_555 A N1 A 9 A A 9 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O4 U 8 A U 8 1_555 A N6 A 9 A A 9 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N1 A 9 A A 9 1_555 A N3 U 8 A U 8 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N6 A 9 A A 9 1_555 A O4 U 8 A U 8 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N1 A 10 A A 10 1_555 A N3 U 7 A U 7 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N6 A 10 A A 10 1_555 A O4 U 7 A U 7 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N1 G 11 A G 11 1_555 A N3 C 6 A C 6 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N2 G 11 A G 11 1_555 A O2 C 6 A C 6 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A O6 G 11 A G 11 1_555 A N4 C 6 A C 6 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A N3 U 12 A U 12 1_555 A N1 A 5 A A 5 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A O4 U 12 A U 12 1_555 A N6 A 5 A A 5 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N3 C 13 A C 13 1_555 A N1 LCG 4 A LCG 4 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A N4 C 13 A C 13 1_555 A O6 LCG 4 A LCG 4 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A O2 C 13 A C 13 1_555 A N2 LCG 4 A LCG 4 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5HBY 
_atom_sites.fract_transf_matrix[1][1]    0.021799 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.01364 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.031263 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.03529 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PZG A 1 101 1 PZG PZG . 
C 2 PZG A 1 102 2 PZG PZG . 
D 3 MG A 1 103 1 MG MG . 
E 4 HOH A 1 201 63 HOH HOH . 
E 4 HOH A 2 202 2 HOH HOH . 
E 4 HOH A 3 203 72 HOH HOH . 
E 4 HOH A 4 204 48 HOH HOH . 
E 4 HOH A 5 205 52 HOH HOH . 
E 4 HOH A 6 206 24 HOH HOH . 
E 4 HOH A 7 207 17 HOH HOH . 
E 4 HOH A 8 208 62 HOH HOH . 
E 4 HOH A 9 209 3 HOH HOH . 
E 4 HOH A 10 210 23 HOH HOH . 
E 4 HOH A 11 211 7 HOH HOH . 
E 4 HOH A 12 212 47 HOH HOH . 
E 4 HOH A 13 213 60 HOH HOH . 
E 4 HOH A 14 214 75 HOH HOH . 
E 4 HOH A 15 215 12 HOH HOH . 
E 4 HOH A 16 216 57 HOH HOH . 
E 4 HOH A 17 217 16 HOH HOH . 
E 4 HOH A 18 218 36 HOH HOH . 
E 4 HOH A 19 219 9 HOH HOH . 
E 4 HOH A 20 220 10 HOH HOH . 
E 4 HOH A 21 221 45 HOH HOH . 
E 4 HOH A 22 222 66 HOH HOH . 
E 4 HOH A 23 223 1 HOH HOH . 
E 4 HOH A 24 224 37 HOH HOH . 
E 4 HOH A 25 225 29 HOH HOH . 
E 4 HOH A 26 226 5 HOH HOH . 
E 4 HOH A 27 227 41 HOH HOH . 
E 4 HOH A 28 228 22 HOH HOH . 
E 4 HOH A 29 229 44 HOH HOH . 
E 4 HOH A 30 230 11 HOH HOH . 
E 4 HOH A 31 231 67 HOH HOH . 
E 4 HOH A 32 232 43 HOH HOH . 
E 4 HOH A 33 233 50 HOH HOH . 
E 4 HOH A 34 234 25 HOH HOH . 
E 4 HOH A 35 235 21 HOH HOH . 
E 4 HOH A 36 236 73 HOH HOH . 
E 4 HOH A 37 237 15 HOH HOH . 
E 4 HOH A 38 238 59 HOH HOH . 
E 4 HOH A 39 239 6 HOH HOH . 
E 4 HOH A 40 240 38 HOH HOH . 
E 4 HOH A 41 241 46 HOH HOH . 
E 4 HOH A 42 242 18 HOH HOH . 
E 4 HOH A 43 243 68 HOH HOH . 
E 4 HOH A 44 244 49 HOH HOH . 
E 4 HOH A 45 245 53 HOH HOH . 
E 4 HOH A 46 246 35 HOH HOH . 
E 4 HOH A 47 247 71 HOH HOH . 
E 4 HOH A 48 248 14 HOH HOH . 
E 4 HOH A 49 249 27 HOH HOH . 
E 4 HOH A 50 250 61 HOH HOH . 
E 4 HOH A 51 251 30 HOH HOH . 
E 4 HOH A 52 252 13 HOH HOH . 
E 4 HOH A 53 253 32 HOH HOH . 
E 4 HOH A 54 254 4 HOH HOH . 
E 4 HOH A 55 255 56 HOH HOH . 
E 4 HOH A 56 256 20 HOH HOH . 
E 4 HOH A 57 257 19 HOH HOH . 
E 4 HOH A 58 258 54 HOH HOH . 
E 4 HOH A 59 259 51 HOH HOH . 
E 4 HOH A 60 260 55 HOH HOH . 
E 4 HOH A 61 261 58 HOH HOH . 
E 4 HOH A 62 262 28 HOH HOH . 
E 4 HOH A 63 263 8 HOH HOH . 
E 4 HOH A 64 264 31 HOH HOH . 
E 4 HOH A 65 265 69 HOH HOH . 
E 4 HOH A 66 266 26 HOH HOH . 
E 4 HOH A 67 267 70 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -5.558 
_atom_site.Cartn_y               -7.182 
_atom_site.Cartn_z               -9.639 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        13.07 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           103 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#