data_5HBY # _model_server_result.job_id WphRlIqv-mCnmWftjHnJVA _model_server_result.datetime_utc '2024-11-26 20:42:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hby # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 5HBY # _exptl.entry_id 5HBY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.03 _cell.angle_gamma 90 _cell.entry_id 5HBY _cell.length_a 45.873 _cell.length_b 31.987 _cell.length_c 33.426 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HBY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' LCC 1 A LCC 1 1_555 A P LCC 2 A LCC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.667 ? covale ? covale2 A O3' LCC 2 A LCC 2 1_555 A P LCC 3 A LCC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? covale ? covale3 A O3' LCC 3 A LCC 3 1_555 A P LCG 4 A LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.66 ? covale ? covale4 A O3' LCG 4 A LCG 4 1_555 A P A 5 A A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? metalc ? metalc1 D MG MG . A MG 103 1_555 E O HOH . A HOH 211 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc2 D MG MG . A MG 103 1_555 E O HOH . A HOH 219 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc3 D MG MG . A MG 103 1_555 E O HOH . A HOH 220 2_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 D MG MG . A MG 103 1_555 E O HOH . A HOH 230 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc5 D MG MG . A MG 103 1_555 E O HOH . A HOH 239 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc6 D MG MG . A MG 103 1_555 E O HOH . A HOH 263 2_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? hydrog WATSON-CRICK hydrog1 A N1 LCG 4 A LCG 4 1_555 A N3 C 13 A C 13 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 LCG 4 A LCG 4 1_555 A O2 C 13 A C 13 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 LCG 4 A LCG 4 1_555 A N4 C 13 A C 13 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 A 5 A A 5 1_555 A N3 U 12 A U 12 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 A 5 A A 5 1_555 A O4 U 12 A U 12 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 C 6 A C 6 1_555 A N1 G 11 A G 11 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 C 6 A C 6 1_555 A O6 G 11 A G 11 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 C 6 A C 6 1_555 A N2 G 11 A G 11 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 U 7 A U 7 1_555 A N1 A 10 A A 10 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 U 7 A U 7 1_555 A N6 A 10 A A 10 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 U 8 A U 8 1_555 A N1 A 9 A A 9 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 U 8 A U 8 1_555 A N6 A 9 A A 9 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 A 9 A A 9 1_555 A N3 U 8 A U 8 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 A 9 A A 9 1_555 A O4 U 8 A U 8 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 A 10 A A 10 1_555 A N3 U 7 A U 7 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 A 10 A A 10 1_555 A O4 U 7 A U 7 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 G 11 A G 11 1_555 A N3 C 6 A C 6 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 G 11 A G 11 1_555 A O2 C 6 A C 6 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 G 11 A G 11 1_555 A N4 C 6 A C 6 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 U 12 A U 12 1_555 A N1 A 5 A A 5 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O4 U 12 A U 12 1_555 A N6 A 5 A A 5 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 C 13 A C 13 1_555 A N1 LCG 4 A LCG 4 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 C 13 A C 13 1_555 A O6 LCG 4 A LCG 4 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 C 13 A C 13 1_555 A N2 LCG 4 A LCG 4 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5HBY _atom_sites.fract_transf_matrix[1][1] 0.021799 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.01364 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.031263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.03529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PZG A 1 101 1 PZG PZG . C 2 PZG A 1 102 2 PZG PZG . D 3 MG A 1 103 1 MG MG . E 4 HOH A 1 201 63 HOH HOH . E 4 HOH A 2 202 2 HOH HOH . E 4 HOH A 3 203 72 HOH HOH . E 4 HOH A 4 204 48 HOH HOH . E 4 HOH A 5 205 52 HOH HOH . E 4 HOH A 6 206 24 HOH HOH . E 4 HOH A 7 207 17 HOH HOH . E 4 HOH A 8 208 62 HOH HOH . E 4 HOH A 9 209 3 HOH HOH . E 4 HOH A 10 210 23 HOH HOH . E 4 HOH A 11 211 7 HOH HOH . E 4 HOH A 12 212 47 HOH HOH . E 4 HOH A 13 213 60 HOH HOH . E 4 HOH A 14 214 75 HOH HOH . E 4 HOH A 15 215 12 HOH HOH . E 4 HOH A 16 216 57 HOH HOH . E 4 HOH A 17 217 16 HOH HOH . E 4 HOH A 18 218 36 HOH HOH . E 4 HOH A 19 219 9 HOH HOH . E 4 HOH A 20 220 10 HOH HOH . E 4 HOH A 21 221 45 HOH HOH . E 4 HOH A 22 222 66 HOH HOH . E 4 HOH A 23 223 1 HOH HOH . E 4 HOH A 24 224 37 HOH HOH . E 4 HOH A 25 225 29 HOH HOH . E 4 HOH A 26 226 5 HOH HOH . E 4 HOH A 27 227 41 HOH HOH . E 4 HOH A 28 228 22 HOH HOH . E 4 HOH A 29 229 44 HOH HOH . E 4 HOH A 30 230 11 HOH HOH . E 4 HOH A 31 231 67 HOH HOH . E 4 HOH A 32 232 43 HOH HOH . E 4 HOH A 33 233 50 HOH HOH . E 4 HOH A 34 234 25 HOH HOH . E 4 HOH A 35 235 21 HOH HOH . E 4 HOH A 36 236 73 HOH HOH . E 4 HOH A 37 237 15 HOH HOH . E 4 HOH A 38 238 59 HOH HOH . E 4 HOH A 39 239 6 HOH HOH . E 4 HOH A 40 240 38 HOH HOH . E 4 HOH A 41 241 46 HOH HOH . E 4 HOH A 42 242 18 HOH HOH . E 4 HOH A 43 243 68 HOH HOH . E 4 HOH A 44 244 49 HOH HOH . E 4 HOH A 45 245 53 HOH HOH . E 4 HOH A 46 246 35 HOH HOH . E 4 HOH A 47 247 71 HOH HOH . E 4 HOH A 48 248 14 HOH HOH . E 4 HOH A 49 249 27 HOH HOH . E 4 HOH A 50 250 61 HOH HOH . E 4 HOH A 51 251 30 HOH HOH . E 4 HOH A 52 252 13 HOH HOH . E 4 HOH A 53 253 32 HOH HOH . E 4 HOH A 54 254 4 HOH HOH . E 4 HOH A 55 255 56 HOH HOH . E 4 HOH A 56 256 20 HOH HOH . E 4 HOH A 57 257 19 HOH HOH . E 4 HOH A 58 258 54 HOH HOH . E 4 HOH A 59 259 51 HOH HOH . E 4 HOH A 60 260 55 HOH HOH . E 4 HOH A 61 261 58 HOH HOH . E 4 HOH A 62 262 28 HOH HOH . E 4 HOH A 63 263 8 HOH HOH . E 4 HOH A 64 264 31 HOH HOH . E 4 HOH A 65 265 69 HOH HOH . E 4 HOH A 66 266 26 HOH HOH . E 4 HOH A 67 267 70 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -5.558 _atom_site.Cartn_y -7.182 _atom_site.Cartn_z -9.639 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 103 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #