data_5HC8 # _model_server_result.job_id Pi2rI4J5qrT3SH0oLBEe9A _model_server_result.datetime_utc '2024-11-02 21:31:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5HC8 # _exptl.entry_id 5HC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 68.117 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methylbuta-1,3-diene _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HC8 _cell.length_a 54.211 _cell.length_b 140.235 _cell.length_c 78.702 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -54.211 0 -39.351 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 21 A ASP 76 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc2 B MG MG . A MG 401 1_555 C O2 PIS . A PIS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc3 B MG MG . A MG 401 1_555 F O7 ISY . A ISY 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc4 B MG MG . A MG 401 1_555 G O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc5 B MG MG . A MG 401 1_555 G O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? # _chem_comp.formula 'C5 H8' _chem_comp.formula_weight 68.117 _chem_comp.id 61G _chem_comp.mon_nstd_flag . _chem_comp.name 2-methylbuta-1,3-diene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAD 61G doub 1 n n CAC CAE 61G sing 2 n n CAD CAE 61G sing 3 n n CAE CAB 61G doub 4 n n CAC H1 61G sing 5 n n CAC H2 61G sing 6 n n CAC H3 61G sing 7 n n CAB H5 61G sing 8 n n CAB H6 61G sing 9 n n CAD H8 61G sing 10 n n CAA H10 61G sing 11 n n CAA H11 61G sing 12 n n # _atom_sites.entry_id 5HC8 _atom_sites.fract_transf_matrix[1][1] 0.018446 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007131 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 2 MG MG . C 3 PIS A 1 402 1 PIS DRG . D 4 61G A 1 403 1 61G ISO . E 5 SO4 A 1 404 1 SO4 SO4 . F 6 ISY A 1 405 1 ISY DSP . G 7 HOH A 1 501 47 HOH HOH . G 7 HOH A 2 502 104 HOH HOH . G 7 HOH A 3 503 97 HOH HOH . G 7 HOH A 4 504 15 HOH HOH . G 7 HOH A 5 505 49 HOH HOH . G 7 HOH A 6 506 44 HOH HOH . G 7 HOH A 7 507 45 HOH HOH . G 7 HOH A 8 508 17 HOH HOH . G 7 HOH A 9 509 52 HOH HOH . G 7 HOH A 10 510 35 HOH HOH . G 7 HOH A 11 511 20 HOH HOH . G 7 HOH A 12 512 62 HOH HOH . G 7 HOH A 13 513 1 HOH HOH . G 7 HOH A 14 514 2 HOH HOH . G 7 HOH A 15 515 38 HOH HOH . G 7 HOH A 16 516 39 HOH HOH . G 7 HOH A 17 517 3 HOH HOH . G 7 HOH A 18 518 29 HOH HOH . G 7 HOH A 19 519 108 HOH HOH . G 7 HOH A 20 520 53 HOH HOH . G 7 HOH A 21 521 124 HOH HOH . G 7 HOH A 22 522 54 HOH HOH . G 7 HOH A 23 523 23 HOH HOH . G 7 HOH A 24 524 12 HOH HOH . G 7 HOH A 25 525 129 HOH HOH . G 7 HOH A 26 526 14 HOH HOH . G 7 HOH A 27 527 26 HOH HOH . G 7 HOH A 28 528 18 HOH HOH . G 7 HOH A 29 529 119 HOH HOH . G 7 HOH A 30 530 72 HOH HOH . G 7 HOH A 31 531 78 HOH HOH . G 7 HOH A 32 532 33 HOH HOH . G 7 HOH A 33 533 4 HOH HOH . G 7 HOH A 34 534 76 HOH HOH . G 7 HOH A 35 535 28 HOH HOH . G 7 HOH A 36 536 114 HOH HOH . G 7 HOH A 37 537 50 HOH HOH . G 7 HOH A 38 538 74 HOH HOH . G 7 HOH A 39 539 51 HOH HOH . G 7 HOH A 40 540 21 HOH HOH . G 7 HOH A 41 541 120 HOH HOH . G 7 HOH A 42 542 133 HOH HOH . G 7 HOH A 43 543 13 HOH HOH . G 7 HOH A 44 544 60 HOH HOH . G 7 HOH A 45 545 34 HOH HOH . G 7 HOH A 46 546 127 HOH HOH . G 7 HOH A 47 547 16 HOH HOH . G 7 HOH A 48 548 125 HOH HOH . G 7 HOH A 49 549 86 HOH HOH . G 7 HOH A 50 550 123 HOH HOH . G 7 HOH A 51 551 65 HOH HOH . G 7 HOH A 52 552 122 HOH HOH . G 7 HOH A 53 553 5 HOH HOH . G 7 HOH A 54 554 25 HOH HOH . G 7 HOH A 55 555 27 HOH HOH . G 7 HOH A 56 556 41 HOH HOH . G 7 HOH A 57 557 22 HOH HOH . G 7 HOH A 58 558 6 HOH HOH . G 7 HOH A 59 559 135 HOH HOH . G 7 HOH A 60 560 43 HOH HOH . G 7 HOH A 61 561 24 HOH HOH . G 7 HOH A 62 562 48 HOH HOH . G 7 HOH A 63 563 8 HOH HOH . G 7 HOH A 64 564 57 HOH HOH . G 7 HOH A 65 565 130 HOH HOH . G 7 HOH A 66 566 61 HOH HOH . G 7 HOH A 67 567 46 HOH HOH . G 7 HOH A 68 568 30 HOH HOH . G 7 HOH A 69 569 31 HOH HOH . G 7 HOH A 70 570 37 HOH HOH . G 7 HOH A 71 571 88 HOH HOH . G 7 HOH A 72 572 7 HOH HOH . G 7 HOH A 73 573 32 HOH HOH . G 7 HOH A 74 574 56 HOH HOH . G 7 HOH A 75 575 9 HOH HOH . G 7 HOH A 76 576 89 HOH HOH . G 7 HOH A 77 577 105 HOH HOH . G 7 HOH A 78 578 71 HOH HOH . G 7 HOH A 79 579 19 HOH HOH . G 7 HOH A 80 580 36 HOH HOH . G 7 HOH A 81 581 11 HOH HOH . G 7 HOH A 82 582 64 HOH HOH . G 7 HOH A 83 583 40 HOH HOH . G 7 HOH A 84 584 98 HOH HOH . G 7 HOH A 85 585 59 HOH HOH . G 7 HOH A 86 586 10 HOH HOH . G 7 HOH A 87 587 58 HOH HOH . G 7 HOH A 88 588 84 HOH HOH . G 7 HOH A 89 589 115 HOH HOH . G 7 HOH A 90 590 55 HOH HOH . G 7 HOH A 91 591 75 HOH HOH . G 7 HOH A 92 592 70 HOH HOH . G 7 HOH A 93 593 69 HOH HOH . G 7 HOH A 94 594 101 HOH HOH . G 7 HOH A 95 595 42 HOH HOH . G 7 HOH A 96 596 121 HOH HOH . G 7 HOH A 97 597 80 HOH HOH . G 7 HOH A 98 598 134 HOH HOH . G 7 HOH A 99 599 106 HOH HOH . G 7 HOH A 100 600 100 HOH HOH . G 7 HOH A 101 601 95 HOH HOH . G 7 HOH A 102 602 107 HOH HOH . G 7 HOH A 103 603 111 HOH HOH . G 7 HOH A 104 604 68 HOH HOH . G 7 HOH A 105 605 109 HOH HOH . G 7 HOH A 106 606 132 HOH HOH . G 7 HOH A 107 607 112 HOH HOH . G 7 HOH A 108 608 110 HOH HOH . G 7 HOH A 109 609 83 HOH HOH . G 7 HOH A 110 610 102 HOH HOH . G 7 HOH A 111 611 113 HOH HOH . G 7 HOH A 112 612 94 HOH HOH . G 7 HOH A 113 613 99 HOH HOH . G 7 HOH A 114 614 116 HOH HOH . G 7 HOH A 115 615 87 HOH HOH . G 7 HOH A 116 616 131 HOH HOH . G 7 HOH A 117 617 128 HOH HOH . G 7 HOH A 118 618 63 HOH HOH . G 7 HOH A 119 619 137 HOH HOH . G 7 HOH A 120 621 118 HOH HOH . G 7 HOH A 121 622 93 HOH HOH . G 7 HOH A 122 623 73 HOH HOH . G 7 HOH A 123 624 66 HOH HOH . G 7 HOH A 124 625 117 HOH HOH . G 7 HOH A 125 626 92 HOH HOH . G 7 HOH A 126 627 77 HOH HOH . G 7 HOH A 127 628 96 HOH HOH . G 7 HOH A 128 629 103 HOH HOH . G 7 HOH A 129 630 79 HOH HOH . G 7 HOH A 130 631 85 HOH HOH . G 7 HOH A 131 632 81 HOH HOH . G 7 HOH A 132 633 67 HOH HOH . G 7 HOH A 133 634 91 HOH HOH . G 7 HOH A 134 635 82 HOH HOH . G 7 HOH A 135 636 126 HOH HOH . G 7 HOH A 136 637 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC 61G . . . D 4 -10.071 -15.976 -12.765 1 28 ? CAC 61G 403 A 1 HETATM 2 C CAE 61G . . . D 4 -9.803 -14.929 -11.655 1 38.77 ? CAE 61G 403 A 1 HETATM 3 C CAB 61G . . . D 4 -9.743 -15.186 -10.173 1 37.81 ? CAB 61G 403 A 1 HETATM 4 C CAD 61G . . . D 4 -9.783 -13.567 -12.055 1 35.38 ? CAD 61G 403 A 1 HETATM 5 C CAA 61G . . . D 4 -9.88 -13.393 -13.461 1 44.92 ? CAA 61G 403 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #