data_5HCC # _model_server_result.job_id ThElk8UuZf700VWsApoBww _model_server_result.datetime_utc '2024-11-04 22:56:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hcc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":2006}' # _entry.id 5HCC # _exptl.entry_id 5HCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 121.158 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HCC _cell.length_a 104.867 _cell.length_b 140.284 _cell.length_c 211.293 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG A 2001 NAG 5 n E NAG 2 E 2 NAG A 2002 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 549 B CYS 567 1_555 B SG CYS 132 A CYS 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 616 B CYS 634 1_555 A SG CYS 651 B CYS 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 20 A CYS 698 1_555 B SG CYS 46 A CYS 724 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 21 A CYS 699 1_555 B SG CYS 53 A CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 26 A CYS 704 1_555 K SG CYS . A CYS 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 33 A CYS 711 1_555 B SG CYS 54 A CYS 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 B SG CYS 178 A CYS 856 1_555 B SG CYS 205 A CYS 883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 B SG CYS 188 A CYS 866 1_555 B SG CYS 849 A CYS 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 B SG CYS 423 A CYS 1101 1_555 B SG CYS 481 A CYS 1159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 697 A CYS 1375 1_555 B SG CYS 827 A CYS 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf11 B SG CYS 727 A CYS 1405 1_555 B SG CYS 796 A CYS 1474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf12 B SG CYS 842 A CYS 1520 1_555 B SG CYS 847 A CYS 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf13 B SG CYS 854 A CYS 1532 1_555 B SG CYS 928 A CYS 1606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 B SG CYS 875 A CYS 1553 1_555 B SG CYS 998 A CYS 1676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 B SG CYS 976 A CYS 1654 1_555 B SG CYS 979 A CYS 1657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf16 C SG CYS 21 C CYS 24 1_555 C SG CYS 143 C CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf17 C SG CYS 53 C CYS 56 1_555 C SG CYS 165 C CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf18 C SG CYS 115 C CYS 118 1_555 C SG CYS 144 C CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf19 D SG CYS 16 D CYS 14 1_555 D SG CYS 40 D CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf20 D SG CYS 21 D CYS 19 1_555 D SG CYS 42 D CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf21 D SG CYS 36 D CYS 34 1_555 D SG CYS 57 D CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 B ND2 ASN 233 A ASN 911 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C3 H7 N O2 S' _chem_comp.formula_weight 121.158 _chem_comp.id CYS _chem_comp.mon_nstd_flag y _chem_comp.name CYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA CYS sing 70 n n N H CYS sing 71 n n N H2 CYS sing 72 n n CA C CYS sing 73 n n CA CB CYS sing 74 n n CA HA CYS sing 75 n n C O CYS doub 76 n n C OXT CYS sing 77 n n CB SG CYS sing 78 n n CB HB2 CYS sing 79 n n CB HB3 CYS sing 80 n n SG HG CYS sing 81 n n OXT HXT CYS sing 82 n n # _atom_sites.entry_id 5HCC _atom_sites.fract_transf_matrix[1][1] 0.009536 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007128 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 EDO B 1 701 5 EDO EDO . G 6 EDO B 1 702 6 EDO EDO . H 6 EDO A 1 2003 1 EDO EDO . I 6 EDO A 1 2004 2 EDO EDO . J 6 EDO A 1 2005 7 EDO EDO . K 7 CYS A 1 2006 1 CYS CYS . L 8 DIO A 1 2007 1764 DIO DIO . M 6 EDO C 1 201 3 EDO EDO . N 6 EDO D 1 101 4 EDO EDO . O 9 HOH B 1 801 50 HOH HOH . O 9 HOH B 2 802 262 HOH HOH . O 9 HOH B 3 803 16 HOH HOH . O 9 HOH B 4 804 100 HOH HOH . O 9 HOH B 5 805 30 HOH HOH . O 9 HOH B 6 806 112 HOH HOH . O 9 HOH B 7 807 116 HOH HOH . O 9 HOH B 8 808 111 HOH HOH . O 9 HOH B 9 809 38 HOH HOH . O 9 HOH B 10 810 176 HOH HOH . O 9 HOH B 11 811 68 HOH HOH . O 9 HOH B 12 812 218 HOH HOH . O 9 HOH B 13 813 222 HOH HOH . O 9 HOH B 14 814 246 HOH HOH . O 9 HOH B 15 815 257 HOH HOH . O 9 HOH B 16 816 152 HOH HOH . O 9 HOH B 17 817 9 HOH HOH . O 9 HOH B 18 818 33 HOH HOH . O 9 HOH B 19 819 256 HOH HOH . O 9 HOH B 20 820 123 HOH HOH . O 9 HOH B 21 821 248 HOH HOH . O 9 HOH B 22 822 247 HOH HOH . O 9 HOH B 23 823 72 HOH HOH . O 9 HOH B 24 824 162 HOH HOH . O 9 HOH B 25 825 195 HOH HOH . O 9 HOH B 26 826 95 HOH HOH . O 9 HOH B 27 827 219 HOH HOH . O 9 HOH B 28 828 146 HOH HOH . O 9 HOH B 29 829 128 HOH HOH . O 9 HOH B 30 830 115 HOH HOH . O 9 HOH B 31 831 106 HOH HOH . O 9 HOH B 32 832 159 HOH HOH . O 9 HOH B 33 833 44 HOH HOH . O 9 HOH B 34 834 217 HOH HOH . O 9 HOH B 35 835 122 HOH HOH . O 9 HOH B 36 836 155 HOH HOH . O 9 HOH B 37 837 78 HOH HOH . O 9 HOH B 38 838 85 HOH HOH . O 9 HOH B 39 839 41 HOH HOH . O 9 HOH B 40 840 239 HOH HOH . O 9 HOH B 41 841 170 HOH HOH . O 9 HOH B 42 842 149 HOH HOH . O 9 HOH B 43 843 52 HOH HOH . O 9 HOH B 44 844 45 HOH HOH . O 9 HOH B 45 845 213 HOH HOH . O 9 HOH B 46 846 24 HOH HOH . O 9 HOH B 47 847 258 HOH HOH . O 9 HOH B 48 848 192 HOH HOH . O 9 HOH B 49 849 207 HOH HOH . O 9 HOH B 50 850 168 HOH HOH . O 9 HOH B 51 851 43 HOH HOH . O 9 HOH B 52 852 153 HOH HOH . O 9 HOH B 53 853 2 HOH HOH . O 9 HOH B 54 854 147 HOH HOH . O 9 HOH B 55 855 119 HOH HOH . O 9 HOH B 56 856 49 HOH HOH . O 9 HOH B 57 857 42 HOH HOH . O 9 HOH B 58 858 157 HOH HOH . O 9 HOH B 59 859 208 HOH HOH . O 9 HOH B 60 860 89 HOH HOH . O 9 HOH B 61 861 199 HOH HOH . O 9 HOH B 62 862 177 HOH HOH . P 9 HOH A 1 2101 215 HOH HOH . P 9 HOH A 2 2102 224 HOH HOH . P 9 HOH A 3 2103 200 HOH HOH . P 9 HOH A 4 2104 241 HOH HOH . P 9 HOH A 5 2105 193 HOH HOH . P 9 HOH A 6 2106 227 HOH HOH . P 9 HOH A 7 2107 40 HOH HOH . P 9 HOH A 8 2108 261 HOH HOH . P 9 HOH A 9 2109 243 HOH HOH . P 9 HOH A 10 2110 228 HOH HOH . P 9 HOH A 11 2111 23 HOH HOH . P 9 HOH A 12 2112 226 HOH HOH . P 9 HOH A 13 2113 216 HOH HOH . P 9 HOH A 14 2114 102 HOH HOH . P 9 HOH A 15 2115 79 HOH HOH . P 9 HOH A 16 2116 138 HOH HOH . P 9 HOH A 17 2117 113 HOH HOH . P 9 HOH A 18 2118 27 HOH HOH . P 9 HOH A 19 2119 110 HOH HOH . P 9 HOH A 20 2120 229 HOH HOH . P 9 HOH A 21 2121 211 HOH HOH . P 9 HOH A 22 2122 15 HOH HOH . P 9 HOH A 23 2123 194 HOH HOH . P 9 HOH A 24 2124 47 HOH HOH . P 9 HOH A 25 2125 28 HOH HOH . P 9 HOH A 26 2126 65 HOH HOH . P 9 HOH A 27 2127 231 HOH HOH . P 9 HOH A 28 2128 51 HOH HOH . P 9 HOH A 29 2129 225 HOH HOH . P 9 HOH A 30 2130 263 HOH HOH . P 9 HOH A 31 2131 221 HOH HOH . P 9 HOH A 32 2132 181 HOH HOH . P 9 HOH A 33 2133 252 HOH HOH . P 9 HOH A 34 2134 233 HOH HOH . P 9 HOH A 35 2135 39 HOH HOH . P 9 HOH A 36 2136 259 HOH HOH . P 9 HOH A 37 2137 245 HOH HOH . P 9 HOH A 38 2138 3 HOH HOH . P 9 HOH A 39 2139 240 HOH HOH . P 9 HOH A 40 2140 25 HOH HOH . P 9 HOH A 41 2141 34 HOH HOH . P 9 HOH A 42 2142 18 HOH HOH . P 9 HOH A 43 2143 108 HOH HOH . P 9 HOH A 44 2144 84 HOH HOH . P 9 HOH A 45 2145 62 HOH HOH . P 9 HOH A 46 2146 55 HOH HOH . P 9 HOH A 47 2147 135 HOH HOH . P 9 HOH A 48 2148 158 HOH HOH . P 9 HOH A 49 2149 143 HOH HOH . P 9 HOH A 50 2150 93 HOH HOH . P 9 HOH A 51 2151 255 HOH HOH . P 9 HOH A 52 2152 264 HOH HOH . P 9 HOH A 53 2153 223 HOH HOH . P 9 HOH A 54 2154 238 HOH HOH . P 9 HOH A 55 2155 83 HOH HOH . P 9 HOH A 56 2156 73 HOH HOH . P 9 HOH A 57 2157 105 HOH HOH . P 9 HOH A 58 2158 67 HOH HOH . P 9 HOH A 59 2159 232 HOH HOH . P 9 HOH A 60 2160 127 HOH HOH . P 9 HOH A 61 2161 48 HOH HOH . P 9 HOH A 62 2162 4 HOH HOH . P 9 HOH A 63 2163 31 HOH HOH . P 9 HOH A 64 2164 190 HOH HOH . P 9 HOH A 65 2165 130 HOH HOH . P 9 HOH A 66 2166 214 HOH HOH . P 9 HOH A 67 2167 13 HOH HOH . P 9 HOH A 68 2168 198 HOH HOH . P 9 HOH A 69 2169 103 HOH HOH . P 9 HOH A 70 2170 242 HOH HOH . P 9 HOH A 71 2171 171 HOH HOH . P 9 HOH A 72 2172 132 HOH HOH . P 9 HOH A 73 2173 63 HOH HOH . P 9 HOH A 74 2174 244 HOH HOH . P 9 HOH A 75 2175 254 HOH HOH . P 9 HOH A 76 2176 56 HOH HOH . P 9 HOH A 77 2177 125 HOH HOH . P 9 HOH A 78 2178 91 HOH HOH . P 9 HOH A 79 2179 260 HOH HOH . P 9 HOH A 80 2180 69 HOH HOH . P 9 HOH A 81 2181 253 HOH HOH . P 9 HOH A 82 2182 175 HOH HOH . P 9 HOH A 83 2183 36 HOH HOH . P 9 HOH A 84 2184 235 HOH HOH . P 9 HOH A 85 2185 186 HOH HOH . P 9 HOH A 86 2186 250 HOH HOH . P 9 HOH A 87 2187 163 HOH HOH . P 9 HOH A 88 2188 203 HOH HOH . P 9 HOH A 89 2189 26 HOH HOH . P 9 HOH A 90 2190 92 HOH HOH . P 9 HOH A 91 2191 251 HOH HOH . P 9 HOH A 92 2192 76 HOH HOH . P 9 HOH A 93 2193 249 HOH HOH . P 9 HOH A 94 2194 77 HOH HOH . P 9 HOH A 95 2195 109 HOH HOH . P 9 HOH A 96 2196 236 HOH HOH . P 9 HOH A 97 2197 188 HOH HOH . P 9 HOH A 98 2198 230 HOH HOH . P 9 HOH A 99 2199 19 HOH HOH . P 9 HOH A 100 2200 148 HOH HOH . P 9 HOH A 101 2201 117 HOH HOH . P 9 HOH A 102 2202 210 HOH HOH . P 9 HOH A 103 2203 234 HOH HOH . P 9 HOH A 104 2204 237 HOH HOH . P 9 HOH A 105 2205 64 HOH HOH . Q 9 HOH C 1 301 114 HOH HOH . Q 9 HOH C 2 302 124 HOH HOH . Q 9 HOH C 3 303 88 HOH HOH . R 9 HOH D 1 201 37 HOH HOH . R 9 HOH D 2 202 220 HOH HOH . R 9 HOH D 3 203 129 HOH HOH . R 9 HOH D 4 204 133 HOH HOH . R 9 HOH D 5 205 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CYS . . . K 7 -18.101 -51.349 34.342 1 119.9 ? N CYS 2006 A 1 HETATM 2 C CA CYS . . . K 7 -18.189 -52.506 33.457 1 120.39 ? CA CYS 2006 A 1 HETATM 3 C C CYS . . . K 7 -18.076 -52.094 31.994 1 117.39 ? C CYS 2006 A 1 HETATM 4 O O CYS . . . K 7 -18.781 -51.197 31.535 1 115.4 ? O CYS 2006 A 1 HETATM 5 C CB CYS . . . K 7 -19.499 -53.257 33.694 1 124.28 ? CB CYS 2006 A 1 HETATM 6 S SG CYS . . . K 7 -20.901 -52.175 34.049 1 129.18 ? SG CYS 2006 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #