data_5HD4 # _model_server_result.job_id WSVzGuCUSSqzusck2PJefw _model_server_result.datetime_utc '2024-11-23 02:38:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hd4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 5HD4 # _exptl.entry_id 5HD4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HD4 _cell.length_a 71.532 _cell.length_b 91.406 _cell.length_c 63.227 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HD4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 166 n n S C1 DMS sing 167 n n S C2 DMS sing 168 n n C1 H11 DMS sing 169 n n C1 H12 DMS sing 170 n n C1 H13 DMS sing 171 n n C2 H21 DMS sing 172 n n C2 H22 DMS sing 173 n n C2 H23 DMS sing 174 n n # _atom_sites.entry_id 5HD4 _atom_sites.fract_transf_matrix[1][1] 0.01398 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 38Z A 1 401 401 38Z LIG . C 3 SO4 A 1 402 503 SO4 SO4 . D 3 SO4 A 1 403 504 SO4 SO4 . E 3 SO4 A 1 404 506 SO4 SO4 . F 4 PG4 A 1 405 601 PG4 PG4 . G 5 DMS A 1 406 801 DMS DMS . H 5 DMS A 1 407 802 DMS DMS . I 6 HOH A 1 501 164 HOH HOH . I 6 HOH A 2 502 73 HOH HOH . I 6 HOH A 3 503 125 HOH HOH . I 6 HOH A 4 504 166 HOH HOH . I 6 HOH A 5 505 116 HOH HOH . I 6 HOH A 6 506 40 HOH HOH . I 6 HOH A 7 507 21 HOH HOH . I 6 HOH A 8 508 199 HOH HOH . I 6 HOH A 9 509 130 HOH HOH . I 6 HOH A 10 510 55 HOH HOH . I 6 HOH A 11 511 14 HOH HOH . I 6 HOH A 12 512 304 HOH HOH . I 6 HOH A 13 513 241 HOH HOH . I 6 HOH A 14 514 282 HOH HOH . I 6 HOH A 15 515 314 HOH HOH . I 6 HOH A 16 516 311 HOH HOH . I 6 HOH A 17 517 244 HOH HOH . I 6 HOH A 18 518 28 HOH HOH . I 6 HOH A 19 519 296 HOH HOH . I 6 HOH A 20 520 172 HOH HOH . I 6 HOH A 21 521 52 HOH HOH . I 6 HOH A 22 522 307 HOH HOH . I 6 HOH A 23 523 72 HOH HOH . I 6 HOH A 24 524 24 HOH HOH . I 6 HOH A 25 525 272 HOH HOH . I 6 HOH A 26 526 298 HOH HOH . I 6 HOH A 27 527 169 HOH HOH . I 6 HOH A 28 528 66 HOH HOH . I 6 HOH A 29 529 157 HOH HOH . I 6 HOH A 30 530 37 HOH HOH . I 6 HOH A 31 531 17 HOH HOH . I 6 HOH A 32 532 34 HOH HOH . I 6 HOH A 33 533 60 HOH HOH . I 6 HOH A 34 534 95 HOH HOH . I 6 HOH A 35 535 283 HOH HOH . I 6 HOH A 36 536 297 HOH HOH . I 6 HOH A 37 537 53 HOH HOH . I 6 HOH A 38 538 90 HOH HOH . I 6 HOH A 39 539 111 HOH HOH . I 6 HOH A 40 540 65 HOH HOH . I 6 HOH A 41 541 143 HOH HOH . I 6 HOH A 42 542 216 HOH HOH . I 6 HOH A 43 543 59 HOH HOH . I 6 HOH A 44 544 77 HOH HOH . I 6 HOH A 45 545 300 HOH HOH . I 6 HOH A 46 546 49 HOH HOH . I 6 HOH A 47 547 167 HOH HOH . I 6 HOH A 48 548 86 HOH HOH . I 6 HOH A 49 549 156 HOH HOH . I 6 HOH A 50 550 43 HOH HOH . I 6 HOH A 51 551 291 HOH HOH . I 6 HOH A 52 552 206 HOH HOH . I 6 HOH A 53 553 301 HOH HOH . I 6 HOH A 54 554 238 HOH HOH . I 6 HOH A 55 555 54 HOH HOH . I 6 HOH A 56 556 48 HOH HOH . I 6 HOH A 57 557 186 HOH HOH . I 6 HOH A 58 558 135 HOH HOH . I 6 HOH A 59 559 32 HOH HOH . I 6 HOH A 60 560 82 HOH HOH . I 6 HOH A 61 561 123 HOH HOH . I 6 HOH A 62 562 46 HOH HOH . I 6 HOH A 63 563 196 HOH HOH . I 6 HOH A 64 564 99 HOH HOH . I 6 HOH A 65 565 64 HOH HOH . I 6 HOH A 66 566 230 HOH HOH . I 6 HOH A 67 567 234 HOH HOH . I 6 HOH A 68 568 315 HOH HOH . I 6 HOH A 69 569 29 HOH HOH . I 6 HOH A 70 570 10 HOH HOH . I 6 HOH A 71 571 184 HOH HOH . I 6 HOH A 72 572 44 HOH HOH . I 6 HOH A 73 573 165 HOH HOH . I 6 HOH A 74 574 174 HOH HOH . I 6 HOH A 75 575 106 HOH HOH . I 6 HOH A 76 576 13 HOH HOH . I 6 HOH A 77 577 281 HOH HOH . I 6 HOH A 78 578 145 HOH HOH . I 6 HOH A 79 579 171 HOH HOH . I 6 HOH A 80 580 26 HOH HOH . I 6 HOH A 81 581 36 HOH HOH . I 6 HOH A 82 582 7 HOH HOH . I 6 HOH A 83 583 118 HOH HOH . I 6 HOH A 84 584 170 HOH HOH . I 6 HOH A 85 585 33 HOH HOH . I 6 HOH A 86 586 144 HOH HOH . I 6 HOH A 87 587 58 HOH HOH . I 6 HOH A 88 588 180 HOH HOH . I 6 HOH A 89 589 248 HOH HOH . I 6 HOH A 90 590 233 HOH HOH . I 6 HOH A 91 591 305 HOH HOH . I 6 HOH A 92 592 188 HOH HOH . I 6 HOH A 93 593 38 HOH HOH . I 6 HOH A 94 594 261 HOH HOH . I 6 HOH A 95 595 22 HOH HOH . I 6 HOH A 96 596 232 HOH HOH . I 6 HOH A 97 597 239 HOH HOH . I 6 HOH A 98 598 39 HOH HOH . I 6 HOH A 99 599 294 HOH HOH . I 6 HOH A 100 600 237 HOH HOH . I 6 HOH A 101 601 207 HOH HOH . I 6 HOH A 102 602 155 HOH HOH . I 6 HOH A 103 603 132 HOH HOH . I 6 HOH A 104 604 147 HOH HOH . I 6 HOH A 105 605 88 HOH HOH . I 6 HOH A 106 606 42 HOH HOH . I 6 HOH A 107 607 63 HOH HOH . I 6 HOH A 108 608 56 HOH HOH . I 6 HOH A 109 609 101 HOH HOH . I 6 HOH A 110 610 25 HOH HOH . I 6 HOH A 111 611 97 HOH HOH . I 6 HOH A 112 612 317 HOH HOH . I 6 HOH A 113 613 139 HOH HOH . I 6 HOH A 114 614 215 HOH HOH . I 6 HOH A 115 615 152 HOH HOH . I 6 HOH A 116 616 202 HOH HOH . I 6 HOH A 117 617 185 HOH HOH . I 6 HOH A 118 618 108 HOH HOH . I 6 HOH A 119 619 150 HOH HOH . I 6 HOH A 120 620 151 HOH HOH . I 6 HOH A 121 621 67 HOH HOH . I 6 HOH A 122 622 12 HOH HOH . I 6 HOH A 123 623 292 HOH HOH . I 6 HOH A 124 624 160 HOH HOH . I 6 HOH A 125 625 3 HOH HOH . I 6 HOH A 126 626 203 HOH HOH . I 6 HOH A 127 627 104 HOH HOH . I 6 HOH A 128 628 2 HOH HOH . I 6 HOH A 129 629 30 HOH HOH . I 6 HOH A 130 630 115 HOH HOH . I 6 HOH A 131 631 76 HOH HOH . I 6 HOH A 132 632 295 HOH HOH . I 6 HOH A 133 633 35 HOH HOH . I 6 HOH A 134 634 276 HOH HOH . I 6 HOH A 135 635 68 HOH HOH . I 6 HOH A 136 636 45 HOH HOH . I 6 HOH A 137 637 5 HOH HOH . I 6 HOH A 138 638 19 HOH HOH . I 6 HOH A 139 639 27 HOH HOH . I 6 HOH A 140 640 122 HOH HOH . I 6 HOH A 141 641 91 HOH HOH . I 6 HOH A 142 642 75 HOH HOH . I 6 HOH A 143 643 4 HOH HOH . I 6 HOH A 144 644 9 HOH HOH . I 6 HOH A 145 645 11 HOH HOH . I 6 HOH A 146 646 31 HOH HOH . I 6 HOH A 147 647 20 HOH HOH . I 6 HOH A 148 648 96 HOH HOH . I 6 HOH A 149 649 78 HOH HOH . I 6 HOH A 150 650 218 HOH HOH . I 6 HOH A 151 651 183 HOH HOH . I 6 HOH A 152 652 50 HOH HOH . I 6 HOH A 153 653 290 HOH HOH . I 6 HOH A 154 654 162 HOH HOH . I 6 HOH A 155 655 23 HOH HOH . I 6 HOH A 156 656 200 HOH HOH . I 6 HOH A 157 657 222 HOH HOH . I 6 HOH A 158 658 74 HOH HOH . I 6 HOH A 159 659 57 HOH HOH . I 6 HOH A 160 660 193 HOH HOH . I 6 HOH A 161 661 79 HOH HOH . I 6 HOH A 162 662 250 HOH HOH . I 6 HOH A 163 663 1 HOH HOH . I 6 HOH A 164 664 313 HOH HOH . I 6 HOH A 165 665 120 HOH HOH . I 6 HOH A 166 666 41 HOH HOH . I 6 HOH A 167 667 127 HOH HOH . I 6 HOH A 168 668 175 HOH HOH . I 6 HOH A 169 669 16 HOH HOH . I 6 HOH A 170 670 302 HOH HOH . I 6 HOH A 171 671 140 HOH HOH . I 6 HOH A 172 672 6 HOH HOH . I 6 HOH A 173 673 303 HOH HOH . I 6 HOH A 174 674 94 HOH HOH . I 6 HOH A 175 675 289 HOH HOH . I 6 HOH A 176 676 161 HOH HOH . I 6 HOH A 177 677 8 HOH HOH . I 6 HOH A 178 678 168 HOH HOH . I 6 HOH A 179 679 87 HOH HOH . I 6 HOH A 180 680 137 HOH HOH . I 6 HOH A 181 681 102 HOH HOH . I 6 HOH A 182 682 176 HOH HOH . I 6 HOH A 183 683 189 HOH HOH . I 6 HOH A 184 684 136 HOH HOH . I 6 HOH A 185 685 113 HOH HOH . I 6 HOH A 186 686 284 HOH HOH . I 6 HOH A 187 687 134 HOH HOH . I 6 HOH A 188 688 187 HOH HOH . I 6 HOH A 189 689 85 HOH HOH . I 6 HOH A 190 690 62 HOH HOH . I 6 HOH A 191 691 178 HOH HOH . I 6 HOH A 192 692 51 HOH HOH . I 6 HOH A 193 693 308 HOH HOH . I 6 HOH A 194 694 121 HOH HOH . I 6 HOH A 195 695 107 HOH HOH . I 6 HOH A 196 696 89 HOH HOH . I 6 HOH A 197 697 70 HOH HOH . I 6 HOH A 198 698 197 HOH HOH . I 6 HOH A 199 699 71 HOH HOH . I 6 HOH A 200 700 227 HOH HOH . I 6 HOH A 201 701 236 HOH HOH . I 6 HOH A 202 702 192 HOH HOH . I 6 HOH A 203 703 61 HOH HOH . I 6 HOH A 204 704 285 HOH HOH . I 6 HOH A 205 705 131 HOH HOH . I 6 HOH A 206 706 286 HOH HOH . I 6 HOH A 207 707 81 HOH HOH . I 6 HOH A 208 708 267 HOH HOH . I 6 HOH A 209 709 69 HOH HOH . I 6 HOH A 210 710 117 HOH HOH . I 6 HOH A 211 711 299 HOH HOH . I 6 HOH A 212 712 133 HOH HOH . I 6 HOH A 213 713 259 HOH HOH . I 6 HOH A 214 714 80 HOH HOH . I 6 HOH A 215 715 141 HOH HOH . I 6 HOH A 216 716 224 HOH HOH . I 6 HOH A 217 717 316 HOH HOH . I 6 HOH A 218 718 142 HOH HOH . I 6 HOH A 219 719 221 HOH HOH . I 6 HOH A 220 720 146 HOH HOH . I 6 HOH A 221 721 154 HOH HOH . I 6 HOH A 222 722 293 HOH HOH . I 6 HOH A 223 723 112 HOH HOH . I 6 HOH A 224 724 257 HOH HOH . I 6 HOH A 225 725 191 HOH HOH . I 6 HOH A 226 726 47 HOH HOH . I 6 HOH A 227 727 15 HOH HOH . I 6 HOH A 228 728 100 HOH HOH . I 6 HOH A 229 729 83 HOH HOH . I 6 HOH A 230 730 275 HOH HOH . I 6 HOH A 231 731 252 HOH HOH . I 6 HOH A 232 732 177 HOH HOH . I 6 HOH A 233 733 149 HOH HOH . I 6 HOH A 234 734 119 HOH HOH . I 6 HOH A 235 735 128 HOH HOH . I 6 HOH A 236 736 129 HOH HOH . I 6 HOH A 237 737 163 HOH HOH . I 6 HOH A 238 738 105 HOH HOH . I 6 HOH A 239 739 251 HOH HOH . I 6 HOH A 240 740 287 HOH HOH . I 6 HOH A 241 741 190 HOH HOH . I 6 HOH A 242 742 84 HOH HOH . I 6 HOH A 243 743 126 HOH HOH . I 6 HOH A 244 744 114 HOH HOH . I 6 HOH A 245 745 181 HOH HOH . I 6 HOH A 246 746 109 HOH HOH . I 6 HOH A 247 747 148 HOH HOH . I 6 HOH A 248 748 312 HOH HOH . I 6 HOH A 249 749 255 HOH HOH . I 6 HOH A 250 750 245 HOH HOH . I 6 HOH A 251 751 265 HOH HOH . I 6 HOH A 252 752 309 HOH HOH . I 6 HOH A 253 753 213 HOH HOH . I 6 HOH A 254 754 92 HOH HOH . I 6 HOH A 255 755 158 HOH HOH . I 6 HOH A 256 756 18 HOH HOH . I 6 HOH A 257 757 195 HOH HOH . I 6 HOH A 258 758 217 HOH HOH . I 6 HOH A 259 759 179 HOH HOH . I 6 HOH A 260 760 246 HOH HOH . I 6 HOH A 261 761 103 HOH HOH . I 6 HOH A 262 762 124 HOH HOH . I 6 HOH A 263 763 310 HOH HOH . I 6 HOH A 264 764 159 HOH HOH . I 6 HOH A 265 765 93 HOH HOH . I 6 HOH A 266 766 182 HOH HOH . I 6 HOH A 267 767 98 HOH HOH . I 6 HOH A 268 768 270 HOH HOH . I 6 HOH A 269 769 264 HOH HOH . I 6 HOH A 270 770 138 HOH HOH . I 6 HOH A 271 771 194 HOH HOH . I 6 HOH A 272 772 268 HOH HOH . I 6 HOH A 273 773 288 HOH HOH . I 6 HOH A 274 774 260 HOH HOH . I 6 HOH A 275 775 266 HOH HOH . I 6 HOH A 276 776 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . H 5 42.061 37.683 7.22 1 47.02 ? S DMS 407 A 1 HETATM 2 O O DMS . . . H 5 43.137 37.185 6.466 1 48.98 ? O DMS 407 A 1 HETATM 3 C C1 DMS . . . H 5 41.179 36.448 8.178 1 45.46 ? C1 DMS 407 A 1 HETATM 4 C C2 DMS . . . H 5 42.788 38.714 8.484 1 46.15 ? C2 DMS 407 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #