data_5HDA # _model_server_result.job_id eEHKyIjHNhRmUNukWcedKw _model_server_result.datetime_utc '2024-12-23 04:28:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 5HDA # _exptl.entry_id 5HDA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.53 _cell.angle_gamma 90 _cell.entry_id 5HDA _cell.length_a 58.456 _cell.length_b 38.19 _cell.length_c 82.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 85 A CYS 523 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc2 A SG CYS 88 A CYS 526 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc3 A SG CYS 96 A CYS 534 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc4 A SG CYS 97 A CYS 535 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc5 A SG CYS 103 A CYS 541 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc6 A SG CYS 107 A CYS 545 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc7 A NE2 HIS 116 A HIS 554 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc8 A SG CYS 120 A CYS 558 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc9 B SG CYS 85 C CYS 523 1_555 G ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc10 B SG CYS 88 C CYS 526 1_555 G ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc11 B SG CYS 96 C CYS 534 1_555 H ZN ZN . C ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc12 B SG CYS 97 C CYS 535 1_555 H ZN ZN . C ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc13 B SG CYS 103 C CYS 541 1_555 G ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc14 B SG CYS 107 C CYS 545 1_555 G ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc15 B NE2 HIS 116 C HIS 554 1_555 H ZN ZN . C ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc16 B SG CYS 120 C CYS 558 1_555 H ZN ZN . C ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5HDA _atom_sites.fract_transf_matrix[1][1] 0.017107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002263 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012199 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 601 104 ZN ZN . F 3 ZN A 1 602 105 ZN ZN . G 3 ZN C 1 601 5 ZN ZN . H 3 ZN C 1 602 6 ZN ZN . I 4 HOH A 1 701 27 HOH HOH . I 4 HOH A 2 702 57 HOH HOH . I 4 HOH A 3 703 61 HOH HOH . I 4 HOH A 4 704 2 HOH HOH . I 4 HOH A 5 705 89 HOH HOH . I 4 HOH A 6 706 94 HOH HOH . I 4 HOH A 7 707 75 HOH HOH . I 4 HOH A 8 708 98 HOH HOH . I 4 HOH A 9 709 86 HOH HOH . I 4 HOH A 10 710 80 HOH HOH . I 4 HOH A 11 711 19 HOH HOH . I 4 HOH A 12 712 5 HOH HOH . I 4 HOH A 13 713 32 HOH HOH . I 4 HOH A 14 714 1 HOH HOH . I 4 HOH A 15 715 49 HOH HOH . I 4 HOH A 16 716 20 HOH HOH . I 4 HOH A 17 717 74 HOH HOH . I 4 HOH A 18 718 68 HOH HOH . I 4 HOH A 19 719 48 HOH HOH . I 4 HOH A 20 720 107 HOH HOH . I 4 HOH A 21 721 53 HOH HOH . I 4 HOH A 22 722 25 HOH HOH . I 4 HOH A 23 723 8 HOH HOH . I 4 HOH A 24 724 13 HOH HOH . I 4 HOH A 25 725 66 HOH HOH . I 4 HOH A 26 726 24 HOH HOH . I 4 HOH A 27 727 50 HOH HOH . I 4 HOH A 28 728 12 HOH HOH . I 4 HOH A 29 729 73 HOH HOH . I 4 HOH A 30 730 17 HOH HOH . I 4 HOH A 31 731 54 HOH HOH . I 4 HOH A 32 732 38 HOH HOH . I 4 HOH A 33 733 56 HOH HOH . I 4 HOH A 34 734 22 HOH HOH . I 4 HOH A 35 735 9 HOH HOH . I 4 HOH A 36 736 35 HOH HOH . I 4 HOH A 37 737 62 HOH HOH . I 4 HOH A 38 738 34 HOH HOH . I 4 HOH A 39 739 63 HOH HOH . I 4 HOH A 40 740 82 HOH HOH . I 4 HOH A 41 741 87 HOH HOH . I 4 HOH A 42 742 96 HOH HOH . I 4 HOH A 43 743 39 HOH HOH . I 4 HOH A 44 744 95 HOH HOH . I 4 HOH A 45 745 81 HOH HOH . I 4 HOH A 46 746 99 HOH HOH . I 4 HOH A 47 747 40 HOH HOH . I 4 HOH A 48 748 47 HOH HOH . I 4 HOH A 49 749 28 HOH HOH . I 4 HOH A 50 750 97 HOH HOH . I 4 HOH A 51 751 69 HOH HOH . I 4 HOH A 52 752 106 HOH HOH . I 4 HOH A 53 753 92 HOH HOH . J 4 HOH C 1 701 46 HOH HOH . J 4 HOH C 2 702 26 HOH HOH . J 4 HOH C 3 703 41 HOH HOH . J 4 HOH C 4 704 52 HOH HOH . J 4 HOH C 5 705 71 HOH HOH . J 4 HOH C 6 706 85 HOH HOH . J 4 HOH C 7 707 29 HOH HOH . J 4 HOH C 8 708 59 HOH HOH . J 4 HOH C 9 709 14 HOH HOH . J 4 HOH C 10 710 44 HOH HOH . J 4 HOH C 11 711 16 HOH HOH . J 4 HOH C 12 712 78 HOH HOH . J 4 HOH C 13 713 36 HOH HOH . J 4 HOH C 14 714 33 HOH HOH . J 4 HOH C 15 715 10 HOH HOH . J 4 HOH C 16 716 30 HOH HOH . J 4 HOH C 17 717 4 HOH HOH . J 4 HOH C 18 718 83 HOH HOH . J 4 HOH C 19 719 7 HOH HOH . J 4 HOH C 20 720 15 HOH HOH . J 4 HOH C 21 721 72 HOH HOH . J 4 HOH C 22 722 11 HOH HOH . J 4 HOH C 23 723 103 HOH HOH . J 4 HOH C 24 724 18 HOH HOH . J 4 HOH C 25 725 45 HOH HOH . J 4 HOH C 26 726 43 HOH HOH . J 4 HOH C 27 727 6 HOH HOH . J 4 HOH C 28 728 101 HOH HOH . J 4 HOH C 29 729 60 HOH HOH . J 4 HOH C 30 730 3 HOH HOH . J 4 HOH C 31 731 84 HOH HOH . J 4 HOH C 32 732 79 HOH HOH . J 4 HOH C 33 733 93 HOH HOH . J 4 HOH C 34 734 42 HOH HOH . J 4 HOH C 35 735 65 HOH HOH . J 4 HOH C 36 736 58 HOH HOH . J 4 HOH C 37 737 105 HOH HOH . J 4 HOH C 38 738 64 HOH HOH . J 4 HOH C 39 739 21 HOH HOH . J 4 HOH C 40 740 70 HOH HOH . J 4 HOH C 41 741 90 HOH HOH . J 4 HOH C 42 742 91 HOH HOH . K 4 HOH B 1 401 31 HOH HOH . K 4 HOH B 2 402 55 HOH HOH . K 4 HOH B 3 403 37 HOH HOH . K 4 HOH B 4 404 88 HOH HOH . K 4 HOH B 5 405 67 HOH HOH . K 4 HOH B 6 406 23 HOH HOH . K 4 HOH B 7 407 76 HOH HOH . K 4 HOH B 8 408 104 HOH HOH . K 4 HOH B 9 409 102 HOH HOH . L 4 HOH D 1 401 51 HOH HOH . L 4 HOH D 2 402 100 HOH HOH . L 4 HOH D 3 403 77 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 36.411 _atom_site.Cartn_y 12.643 _atom_site.Cartn_z 39.285 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 69 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #