data_5HDG # _model_server_result.job_id WGjsITglkr_XeDPzlIc3DQ _model_server_result.datetime_utc '2025-02-05 06:59:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hdg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5HDG # _exptl.entry_id 5HDG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HDG _cell.length_a 48.61 _cell.length_b 64.42 _cell.length_c 68.77 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HDG _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 17 A LEU 25 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc2 A O VAL 18 A VAL 26 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc3 A O ASP 20 A ASP 28 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc4 A OG1 THR 23 A THR 31 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc5 A OD1 ASP 24 A ASP 32 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc6 A O ILE 27 A ILE 35 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5HDG _atom_sites.fract_transf_matrix[1][1] 0.020572 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 1 NA NA . C 3 HOH A 1 301 105 HOH HOH . C 3 HOH A 2 302 30 HOH HOH . C 3 HOH A 3 303 144 HOH HOH . C 3 HOH A 4 304 67 HOH HOH . C 3 HOH A 5 305 95 HOH HOH . C 3 HOH A 6 306 52 HOH HOH . C 3 HOH A 7 307 91 HOH HOH . C 3 HOH A 8 308 64 HOH HOH . C 3 HOH A 9 309 87 HOH HOH . C 3 HOH A 10 310 77 HOH HOH . C 3 HOH A 11 311 22 HOH HOH . C 3 HOH A 12 312 56 HOH HOH . C 3 HOH A 13 313 57 HOH HOH . C 3 HOH A 14 314 26 HOH HOH . C 3 HOH A 15 315 28 HOH HOH . C 3 HOH A 16 316 27 HOH HOH . C 3 HOH A 17 317 25 HOH HOH . C 3 HOH A 18 318 127 HOH HOH . C 3 HOH A 19 319 62 HOH HOH . C 3 HOH A 20 320 12 HOH HOH . C 3 HOH A 21 321 11 HOH HOH . C 3 HOH A 22 322 41 HOH HOH . C 3 HOH A 23 323 15 HOH HOH . C 3 HOH A 24 324 16 HOH HOH . C 3 HOH A 25 325 1 HOH HOH . C 3 HOH A 26 326 6 HOH HOH . C 3 HOH A 27 327 4 HOH HOH . C 3 HOH A 28 328 10 HOH HOH . C 3 HOH A 29 329 76 HOH HOH . C 3 HOH A 30 330 145 HOH HOH . C 3 HOH A 31 331 113 HOH HOH . C 3 HOH A 32 332 99 HOH HOH . C 3 HOH A 33 333 96 HOH HOH . C 3 HOH A 34 334 8 HOH HOH . C 3 HOH A 35 335 31 HOH HOH . C 3 HOH A 36 336 50 HOH HOH . C 3 HOH A 37 337 51 HOH HOH . C 3 HOH A 38 338 43 HOH HOH . C 3 HOH A 39 339 60 HOH HOH . C 3 HOH A 40 340 143 HOH HOH . C 3 HOH A 41 341 71 HOH HOH . C 3 HOH A 42 342 109 HOH HOH . C 3 HOH A 43 343 83 HOH HOH . C 3 HOH A 44 344 72 HOH HOH . C 3 HOH A 45 345 137 HOH HOH . C 3 HOH A 46 346 24 HOH HOH . C 3 HOH A 47 347 14 HOH HOH . C 3 HOH A 48 348 112 HOH HOH . C 3 HOH A 49 349 37 HOH HOH . C 3 HOH A 50 350 126 HOH HOH . C 3 HOH A 51 351 46 HOH HOH . C 3 HOH A 52 352 74 HOH HOH . C 3 HOH A 53 353 5 HOH HOH . C 3 HOH A 54 354 34 HOH HOH . C 3 HOH A 55 355 40 HOH HOH . C 3 HOH A 56 356 42 HOH HOH . C 3 HOH A 57 357 36 HOH HOH . C 3 HOH A 58 358 134 HOH HOH . C 3 HOH A 59 359 47 HOH HOH . C 3 HOH A 60 360 7 HOH HOH . C 3 HOH A 61 361 2 HOH HOH . C 3 HOH A 62 362 141 HOH HOH . C 3 HOH A 63 363 88 HOH HOH . C 3 HOH A 64 364 49 HOH HOH . C 3 HOH A 65 365 69 HOH HOH . C 3 HOH A 66 366 9 HOH HOH . C 3 HOH A 67 367 79 HOH HOH . C 3 HOH A 68 368 35 HOH HOH . C 3 HOH A 69 369 3 HOH HOH . C 3 HOH A 70 370 21 HOH HOH . C 3 HOH A 71 371 45 HOH HOH . C 3 HOH A 72 372 55 HOH HOH . C 3 HOH A 73 373 97 HOH HOH . C 3 HOH A 74 374 18 HOH HOH . C 3 HOH A 75 375 17 HOH HOH . C 3 HOH A 76 376 108 HOH HOH . C 3 HOH A 77 377 73 HOH HOH . C 3 HOH A 78 378 53 HOH HOH . C 3 HOH A 79 379 33 HOH HOH . C 3 HOH A 80 380 39 HOH HOH . C 3 HOH A 81 381 140 HOH HOH . C 3 HOH A 82 382 54 HOH HOH . C 3 HOH A 83 383 128 HOH HOH . C 3 HOH A 84 384 44 HOH HOH . C 3 HOH A 85 385 106 HOH HOH . C 3 HOH A 86 386 116 HOH HOH . C 3 HOH A 87 387 125 HOH HOH . C 3 HOH A 88 388 90 HOH HOH . C 3 HOH A 89 389 119 HOH HOH . C 3 HOH A 90 390 148 HOH HOH . C 3 HOH A 91 391 29 HOH HOH . C 3 HOH A 92 392 59 HOH HOH . C 3 HOH A 93 393 130 HOH HOH . C 3 HOH A 94 394 147 HOH HOH . C 3 HOH A 95 395 58 HOH HOH . C 3 HOH A 96 396 102 HOH HOH . C 3 HOH A 97 397 98 HOH HOH . C 3 HOH A 98 398 101 HOH HOH . C 3 HOH A 99 399 92 HOH HOH . C 3 HOH A 100 400 124 HOH HOH . C 3 HOH A 101 401 80 HOH HOH . C 3 HOH A 102 402 81 HOH HOH . C 3 HOH A 103 403 13 HOH HOH . C 3 HOH A 104 404 115 HOH HOH . C 3 HOH A 105 405 48 HOH HOH . C 3 HOH A 106 406 78 HOH HOH . C 3 HOH A 107 407 123 HOH HOH . C 3 HOH A 108 408 86 HOH HOH . C 3 HOH A 109 409 111 HOH HOH . C 3 HOH A 110 410 117 HOH HOH . C 3 HOH A 111 411 93 HOH HOH . C 3 HOH A 112 412 82 HOH HOH . C 3 HOH A 113 413 89 HOH HOH . C 3 HOH A 114 414 114 HOH HOH . C 3 HOH A 115 415 142 HOH HOH . C 3 HOH A 116 416 129 HOH HOH . C 3 HOH A 117 417 121 HOH HOH . C 3 HOH A 118 418 61 HOH HOH . C 3 HOH A 119 419 32 HOH HOH . C 3 HOH A 120 420 110 HOH HOH . C 3 HOH A 121 421 136 HOH HOH . C 3 HOH A 122 422 100 HOH HOH . C 3 HOH A 123 423 118 HOH HOH . C 3 HOH A 124 424 75 HOH HOH . C 3 HOH A 125 425 38 HOH HOH . C 3 HOH A 126 426 135 HOH HOH . C 3 HOH A 127 427 84 HOH HOH . C 3 HOH A 128 428 66 HOH HOH . C 3 HOH A 129 429 63 HOH HOH . C 3 HOH A 130 430 70 HOH HOH . C 3 HOH A 131 431 20 HOH HOH . C 3 HOH A 132 432 19 HOH HOH . C 3 HOH A 133 433 131 HOH HOH . C 3 HOH A 134 434 68 HOH HOH . C 3 HOH A 135 435 107 HOH HOH . C 3 HOH A 136 436 94 HOH HOH . C 3 HOH A 137 437 104 HOH HOH . C 3 HOH A 138 438 85 HOH HOH . C 3 HOH A 139 439 132 HOH HOH . C 3 HOH A 140 440 103 HOH HOH . C 3 HOH A 141 441 23 HOH HOH . C 3 HOH A 142 442 65 HOH HOH . C 3 HOH A 143 443 122 HOH HOH . C 3 HOH A 144 444 133 HOH HOH . C 3 HOH A 145 445 138 HOH HOH . C 3 HOH A 146 446 139 HOH HOH . C 3 HOH A 147 447 146 HOH HOH . C 3 HOH A 148 448 149 HOH HOH . C 3 HOH A 149 449 120 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.856 _atom_site.Cartn_y -21.774 _atom_site.Cartn_z -18.25 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #