data_5HDH # _model_server_result.job_id ujeEziEju5p8ybqDaoX0Tw _model_server_result.datetime_utc '2024-11-22 20:14:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hdh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":921}' # _entry.id 5HDH # _exptl.entry_id 5HDH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HDH _cell.length_a 171.52 _cell.length_b 171.52 _cell.length_c 301.333 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 8 ? 4 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1080 NAG 2 n B NAG 2 B 2 NAG A 1081 NAG 2 n B BMA 3 B 3 BMA A 1082 BMA 2 n B MAN 4 B 4 MAN A 1083 MAN 3 n C NAG 1 C 1 NAG A 1140 NAG 3 n C NAG 2 C 2 NAG A 1141 NAG 4 n D NAG 1 D 1 NAG A 1170 NAG 4 n D NAG 2 D 2 NAG A 1171 NAG 4 n D BMA 3 D 3 BMA A 1172 BMA 4 n D MAN 4 D 4 MAN A 1174 MAN 4 n D MAN 5 D 5 MAN A 1173 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 36 1_555 A SG CYS 23 A CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 155 A CYS 181 1_555 A SG CYS 161 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 231 A CYS 257 1_555 A SG CYS 244 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf4 A SG CYS 234 A CYS 260 1_555 A SG CYS 241 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf5 A SG CYS 453 A CYS 479 1_555 A SG CYS 483 A CYS 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 750 A CYS 776 1_555 A SG CYS 777 A CYS 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 A SG CYS 752 A CYS 778 1_555 A SG CYS 796 A CYS 822 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 259 A ASN 285 1_555 E C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale2 A ND2 ASN 267 A ASN 293 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 A ND2 ASN 369 A ASN 395 1_555 F C1 NAG . A NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale4 A ND2 ASN 390 A ASN 416 1_555 G C1 NAG . A NAG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 A ND2 ASN 485 A ASN 511 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale6 A ND2 ASN 520 A ASN 546 1_555 H C1 NAG . A NAG 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale7 A ND2 ASN 556 A ASN 582 1_555 I C1 NAG . A NAG 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale8 A ND2 ASN 564 A ASN 590 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale9 A ND2 ASN 614 A ASN 640 1_555 J C1 NAG . A NAG 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale10 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale11 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale12 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale13 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale14 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale15 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale16 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale17 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 266 n n O1 C6 MES sing 267 n n C2 C3 MES sing 268 n n C2 H21 MES sing 269 n n C2 H22 MES sing 270 n n C3 N4 MES sing 271 n n C3 H31 MES sing 272 n n C3 H32 MES sing 273 n n N4 C5 MES sing 274 n n N4 C7 MES sing 275 n n N4 HN4 MES sing 276 n n C5 C6 MES sing 277 n n C5 H51 MES sing 278 n n C5 H52 MES sing 279 n n C6 H61 MES sing 280 n n C6 H62 MES sing 281 n n C7 C8 MES sing 282 n n C7 H71 MES sing 283 n n C7 H72 MES sing 284 n n C8 S MES sing 285 n n C8 H81 MES sing 286 n n C8 H82 MES sing 287 n n S O1S MES doub 288 n n S O2S MES doub 289 n n S O3S MES sing 290 n n # _atom_sites.entry_id 5HDH _atom_sites.fract_transf_matrix[1][1] 0.00583 _atom_sites.fract_transf_matrix[1][2] 0.003366 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006732 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 901 1070 NAG NAG . F 5 NAG A 1 906 1110 NAG NAG . G 5 NAG A 1 907 1120 NAG NAG . H 5 NAG A 1 910 1150 NAG NAG . I 5 NAG A 1 911 1160 NAG NAG . J 5 NAG A 1 917 1180 NAG NAG . K 6 SO4 A 1 918 1 SO4 SO4 . L 6 SO4 A 1 919 2 SO4 SO4 . M 6 SO4 A 1 920 3 SO4 SO4 . N 7 MES A 1 921 1 MES MES . O 8 HOH A 1 1001 95 HOH HOH . O 8 HOH A 2 1002 77 HOH HOH . O 8 HOH A 3 1003 50 HOH HOH . O 8 HOH A 4 1004 10 HOH HOH . O 8 HOH A 5 1005 72 HOH HOH . O 8 HOH A 6 1006 63 HOH HOH . O 8 HOH A 7 1007 65 HOH HOH . O 8 HOH A 8 1008 15 HOH HOH . O 8 HOH A 9 1009 47 HOH HOH . O 8 HOH A 10 1010 20 HOH HOH . O 8 HOH A 11 1011 14 HOH HOH . O 8 HOH A 12 1012 107 HOH HOH . O 8 HOH A 13 1013 73 HOH HOH . O 8 HOH A 14 1014 43 HOH HOH . O 8 HOH A 15 1015 48 HOH HOH . O 8 HOH A 16 1016 6 HOH HOH . O 8 HOH A 17 1017 16 HOH HOH . O 8 HOH A 18 1018 31 HOH HOH . O 8 HOH A 19 1019 74 HOH HOH . O 8 HOH A 20 1020 2 HOH HOH . O 8 HOH A 21 1021 62 HOH HOH . O 8 HOH A 22 1022 42 HOH HOH . O 8 HOH A 23 1023 1 HOH HOH . O 8 HOH A 24 1024 108 HOH HOH . O 8 HOH A 25 1025 45 HOH HOH . O 8 HOH A 26 1026 30 HOH HOH . O 8 HOH A 27 1027 38 HOH HOH . O 8 HOH A 28 1028 32 HOH HOH . O 8 HOH A 29 1029 4 HOH HOH . O 8 HOH A 30 1030 23 HOH HOH . O 8 HOH A 31 1031 41 HOH HOH . O 8 HOH A 32 1032 89 HOH HOH . O 8 HOH A 33 1033 19 HOH HOH . O 8 HOH A 34 1034 81 HOH HOH . O 8 HOH A 35 1035 13 HOH HOH . O 8 HOH A 36 1036 84 HOH HOH . O 8 HOH A 37 1037 12 HOH HOH . O 8 HOH A 38 1038 110 HOH HOH . O 8 HOH A 39 1039 79 HOH HOH . O 8 HOH A 40 1040 11 HOH HOH . O 8 HOH A 41 1041 70 HOH HOH . O 8 HOH A 42 1042 46 HOH HOH . O 8 HOH A 43 1043 36 HOH HOH . O 8 HOH A 44 1044 44 HOH HOH . O 8 HOH A 45 1045 3 HOH HOH . O 8 HOH A 46 1046 80 HOH HOH . O 8 HOH A 47 1047 39 HOH HOH . O 8 HOH A 48 1048 58 HOH HOH . O 8 HOH A 49 1049 67 HOH HOH . O 8 HOH A 50 1050 17 HOH HOH . O 8 HOH A 51 1051 90 HOH HOH . O 8 HOH A 52 1052 55 HOH HOH . O 8 HOH A 53 1053 18 HOH HOH . O 8 HOH A 54 1054 53 HOH HOH . O 8 HOH A 55 1055 52 HOH HOH . O 8 HOH A 56 1056 5 HOH HOH . O 8 HOH A 57 1057 26 HOH HOH . O 8 HOH A 58 1058 22 HOH HOH . O 8 HOH A 59 1059 27 HOH HOH . O 8 HOH A 60 1060 85 HOH HOH . O 8 HOH A 61 1061 51 HOH HOH . O 8 HOH A 62 1062 92 HOH HOH . O 8 HOH A 63 1063 24 HOH HOH . O 8 HOH A 64 1064 35 HOH HOH . O 8 HOH A 65 1065 59 HOH HOH . O 8 HOH A 66 1066 37 HOH HOH . O 8 HOH A 67 1067 68 HOH HOH . O 8 HOH A 68 1068 8 HOH HOH . O 8 HOH A 69 1069 69 HOH HOH . O 8 HOH A 70 1070 88 HOH HOH . O 8 HOH A 71 1071 93 HOH HOH . O 8 HOH A 72 1072 91 HOH HOH . O 8 HOH A 73 1073 87 HOH HOH . O 8 HOH A 74 1074 33 HOH HOH . O 8 HOH A 75 1075 56 HOH HOH . O 8 HOH A 76 1076 64 HOH HOH . O 8 HOH A 77 1077 71 HOH HOH . O 8 HOH A 78 1078 54 HOH HOH . O 8 HOH A 79 1079 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . N 7 -58.122 1.145 0.956 0.5 58.46 ? O1 MES 921 A 1 HETATM 2 C C2 MES . . . N 7 -59.484 1.274 0.563 0.5 80.37 ? C2 MES 921 A 1 HETATM 3 C C3 MES . . . N 7 -60.137 -0.097 0.249 0.5 81.47 ? C3 MES 921 A 1 HETATM 4 N N4 MES . . . N 7 -59.342 -0.939 -0.689 0.5 82 ? N4 MES 921 A 1 HETATM 5 C C5 MES . . . N 7 -57.905 -0.92 -0.354 0.5 68.13 ? C5 MES 921 A 1 HETATM 6 C C6 MES . . . N 7 -57.418 0.518 -0.104 0.5 70.59 ? C6 MES 921 A 1 HETATM 7 C C7 MES . . . N 7 -59.8 -2.352 -0.681 0.5 79.38 ? C7 MES 921 A 1 HETATM 8 C C8 MES . . . N 7 -61.324 -2.478 -0.731 0.5 74.79 ? C8 MES 921 A 1 HETATM 9 S S MES . . . N 7 -61.839 -3.441 0.523 0.5 78.7 ? S MES 921 A 1 HETATM 10 O O1S MES . . . N 7 -62.672 -4.549 0.021 0.5 79.13 ? O1S MES 921 A 1 HETATM 11 O O2S MES . . . N 7 -60.672 -4.005 1.246 0.5 86.4 ? O2S MES 921 A 1 HETATM 12 O O3S MES . . . N 7 -62.62 -2.638 1.479 0.5 74.19 ? O3S MES 921 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #