data_5HE1 # _model_server_result.job_id U9n7-Dtcag1iLnMBDM8u-A _model_server_result.datetime_utc '2024-11-23 09:00:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5he1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 5HE1 # _exptl.entry_id 5HE1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 549.555 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4~{S})-4-[4-fluoranyl-3-(isoquinolin-1-ylmethylcarbamoyl)phenyl]-~{N}-(1~{H}-indazol-5-yl)-6-methyl-2-oxidanylidene-3,4-dihydro-1~{H}-pyrimidine-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HE1 _cell.length_a 62.023 _cell.length_b 241.364 _cell.length_c 212.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O HIS 320 A HIS 348 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc2 A O GLU 332 A GLU 360 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc3 A O VAL 333 A VAL 361 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc4 A O GLN 335 A GLN 363 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc5 A O VAL 338 A VAL 366 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? # _chem_comp.formula 'C30 H24 F N7 O3' _chem_comp.formula_weight 549.555 _chem_comp.id ZS2 _chem_comp.mon_nstd_flag . _chem_comp.name (4~{S})-4-[4-fluoranyl-3-(isoquinolin-1-ylmethylcarbamoyl)phenyl]-~{N}-(1~{H}-indazol-5-yl)-6-methyl-2-oxidanylidene-3,4-dihydro-1~{H}-pyrimidine-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 ZS2 doub 376 n y C7 C8 ZS2 sing 377 n y F C8 ZS2 sing 378 n n C6 C5 ZS2 sing 379 n y C8 C9 ZS2 doub 380 n y C27 N6 ZS2 doub 381 n y C27 C28 ZS2 sing 382 n y O2 C22 ZS2 doub 383 n n O1 C11 ZS2 doub 384 n n C5 C3 ZS2 sing 385 n n C5 C10 ZS2 doub 386 n y C9 C10 ZS2 sing 387 n y C9 C11 ZS2 sing 388 n n N6 N5 ZS2 sing 389 n y C3 N ZS2 sing 390 n n C3 C2 ZS2 sing 391 n n C29 C28 ZS2 sing 392 n y C29 C23 ZS2 doub 393 n y C28 C26 ZS2 doub 394 n y C11 N2 ZS2 sing 395 n n C22 C2 ZS2 sing 396 n n C22 N4 ZS2 sing 397 n n N C4 ZS2 sing 398 n n N5 C26 ZS2 sing 399 n y C23 N4 ZS2 sing 400 n n C23 C24 ZS2 sing 401 n y C2 C1 ZS2 doub 402 n n C26 C25 ZS2 sing 403 n y N2 C12 ZS2 sing 404 n n C24 C25 ZS2 doub 405 n y C12 C13 ZS2 sing 406 n n C4 O ZS2 doub 407 n n C4 N1 ZS2 sing 408 n n N3 C13 ZS2 doub 409 n y N3 C14 ZS2 sing 410 n y C13 C21 ZS2 sing 411 n y C1 N1 ZS2 sing 412 n n C1 C ZS2 sing 413 n n C14 C15 ZS2 doub 414 n y C21 C20 ZS2 doub 415 n y C21 C16 ZS2 sing 416 n y C20 C19 ZS2 sing 417 n y C15 C16 ZS2 sing 418 n y C16 C17 ZS2 doub 419 n y C19 C18 ZS2 doub 420 n y C17 C18 ZS2 sing 421 n y N4 H1 ZS2 sing 422 n n C29 H2 ZS2 sing 423 n n C27 H3 ZS2 sing 424 n n C25 H5 ZS2 sing 425 n n C24 H6 ZS2 sing 426 n n C3 H7 ZS2 sing 427 n n N H8 ZS2 sing 428 n n N1 H9 ZS2 sing 429 n n C H10 ZS2 sing 430 n n C H11 ZS2 sing 431 n n C H12 ZS2 sing 432 n n C10 H13 ZS2 sing 433 n n C7 H14 ZS2 sing 434 n n C6 H15 ZS2 sing 435 n n N2 H16 ZS2 sing 436 n n C12 H17 ZS2 sing 437 n n C12 H18 ZS2 sing 438 n n C15 H19 ZS2 sing 439 n n C14 H20 ZS2 sing 440 n n C20 H21 ZS2 sing 441 n n C19 H22 ZS2 sing 442 n n C18 H23 ZS2 sing 443 n n C17 H24 ZS2 sing 444 n n N5 H4 ZS2 sing 445 n n # _atom_sites.entry_id 5HE1 _atom_sites.fract_transf_matrix[1][1] 0.016123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZS2 A 1 701 1 ZS2 ZS2 . E 5 MG A 1 702 1 MG MG . F 6 HOH A 1 801 49 HOH HOH . F 6 HOH A 2 802 26 HOH HOH . F 6 HOH A 3 803 51 HOH HOH . F 6 HOH A 4 804 56 HOH HOH . F 6 HOH A 5 805 48 HOH HOH . F 6 HOH A 6 806 7 HOH HOH . F 6 HOH A 7 807 52 HOH HOH . F 6 HOH A 8 808 27 HOH HOH . F 6 HOH A 9 809 21 HOH HOH . F 6 HOH A 10 810 36 HOH HOH . F 6 HOH A 11 811 17 HOH HOH . F 6 HOH A 12 812 43 HOH HOH . F 6 HOH A 13 813 39 HOH HOH . F 6 HOH A 14 814 32 HOH HOH . F 6 HOH A 15 815 35 HOH HOH . F 6 HOH A 16 816 22 HOH HOH . F 6 HOH A 17 817 46 HOH HOH . F 6 HOH A 18 818 16 HOH HOH . F 6 HOH A 19 819 6 HOH HOH . F 6 HOH A 20 820 50 HOH HOH . F 6 HOH A 21 821 2 HOH HOH . F 6 HOH A 22 822 57 HOH HOH . F 6 HOH A 23 823 41 HOH HOH . G 6 HOH B 1 401 54 HOH HOH . G 6 HOH B 2 402 1 HOH HOH . G 6 HOH B 3 403 11 HOH HOH . G 6 HOH B 4 404 55 HOH HOH . G 6 HOH B 5 405 53 HOH HOH . G 6 HOH B 6 406 37 HOH HOH . G 6 HOH B 7 407 10 HOH HOH . G 6 HOH B 8 408 3 HOH HOH . G 6 HOH B 9 409 18 HOH HOH . G 6 HOH B 10 410 47 HOH HOH . G 6 HOH B 11 411 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 ZS2 . . . D 4 -21.03 29.117 16.43 1 95.03 ? O2 ZS2 701 A 1 HETATM 2 C C22 ZS2 . . . D 4 -20.379 28.501 17.251 1 94.47 ? C22 ZS2 701 A 1 HETATM 3 N N4 ZS2 . . . D 4 -20.7 27.328 17.788 1 92.47 ? N4 ZS2 701 A 1 HETATM 4 C C23 ZS2 . . . D 4 -21.95 26.762 17.746 1 86.65 ? C23 ZS2 701 A 1 HETATM 5 C C29 ZS2 . . . D 4 -23.027 27.214 16.979 1 79.87 ? C29 ZS2 701 A 1 HETATM 6 C C28 ZS2 . . . D 4 -24.239 26.545 17.031 1 74.88 ? C28 ZS2 701 A 1 HETATM 7 C C27 ZS2 . . . D 4 -25.445 26.819 16.325 1 78.29 ? C27 ZS2 701 A 1 HETATM 8 N N6 ZS2 . . . D 4 -26.359 25.912 16.705 1 76.85 ? N6 ZS2 701 A 1 HETATM 9 N N5 ZS2 . . . D 4 -25.676 25.11 17.637 1 74.62 ? N5 ZS2 701 A 1 HETATM 10 C C26 ZS2 . . . D 4 -24.412 25.468 17.83 1 71.47 ? C26 ZS2 701 A 1 HETATM 11 C C25 ZS2 . . . D 4 -23.388 25.002 18.601 1 75.99 ? C25 ZS2 701 A 1 HETATM 12 C C24 ZS2 . . . D 4 -22.165 25.647 18.564 1 84.78 ? C24 ZS2 701 A 1 HETATM 13 C C2 ZS2 . . . D 4 -19.214 29.241 17.78 1 100.28 ? C2 ZS2 701 A 1 HETATM 14 C C3 ZS2 . . . D 4 -18.109 29.563 16.886 1 101.93 ? C3 ZS2 701 A 1 HETATM 15 N N ZS2 . . . D 4 -17.299 30.639 17.486 1 106.8 ? N ZS2 701 A 1 HETATM 16 C C4 ZS2 . . . D 4 -17.385 31.031 18.782 1 109.38 ? C4 ZS2 701 A 1 HETATM 17 O O ZS2 . . . D 4 -16.729 32.01 19.222 1 113.19 ? O ZS2 701 A 1 HETATM 18 N N1 ZS2 . . . D 4 -18.229 30.472 19.633 1 108.74 ? N1 ZS2 701 A 1 HETATM 19 C C1 ZS2 . . . D 4 -19.228 29.731 19.184 1 109.34 ? C1 ZS2 701 A 1 HETATM 20 C C ZS2 . . . D 4 -20.373 29.483 20.145 1 113 ? C ZS2 701 A 1 HETATM 21 C C5 ZS2 . . . D 4 -17.334 28.344 16.507 1 110.57 ? C5 ZS2 701 A 1 HETATM 22 C C10 ZS2 . . . D 4 -16.094 28.04 17.052 1 115.94 ? C10 ZS2 701 A 1 HETATM 23 C C9 ZS2 . . . D 4 -15.395 26.889 16.645 1 115.83 ? C9 ZS2 701 A 1 HETATM 24 C C8 ZS2 . . . D 4 -15.902 26.047 15.671 1 112.91 ? C8 ZS2 701 A 1 HETATM 25 F F ZS2 . . . D 4 -15.21 24.959 15.279 1 100.67 ? F ZS2 701 A 1 HETATM 26 C C7 ZS2 . . . D 4 -17.138 26.344 15.115 1 115.99 ? C7 ZS2 701 A 1 HETATM 27 C C6 ZS2 . . . D 4 -17.841 27.484 15.528 1 118.86 ? C6 ZS2 701 A 1 HETATM 28 C C11 ZS2 . . . D 4 -14.052 26.573 17.216 1 118.36 ? C11 ZS2 701 A 1 HETATM 29 O O1 ZS2 . . . D 4 -13.319 25.805 16.598 1 115.47 ? O1 ZS2 701 A 1 HETATM 30 N N2 ZS2 . . . D 4 -13.671 27.195 18.327 1 117.92 ? N2 ZS2 701 A 1 HETATM 31 C C12 ZS2 . . . D 4 -12.32 27.082 18.781 1 125.98 ? C12 ZS2 701 A 1 HETATM 32 C C13 ZS2 . . . D 4 -12.101 25.673 19.263 1 140.85 ? C13 ZS2 701 A 1 HETATM 33 C C21 ZS2 . . . D 4 -10.844 25.327 19.757 1 155.17 ? C21 ZS2 701 A 1 HETATM 34 C C16 ZS2 . . . D 4 -10.657 24.024 20.208 1 162.24 ? C16 ZS2 701 A 1 HETATM 35 C C15 ZS2 . . . D 4 -11.721 23.117 20.152 1 155.87 ? C15 ZS2 701 A 1 HETATM 36 C C14 ZS2 . . . D 4 -12.96 23.514 19.65 1 139.4 ? C14 ZS2 701 A 1 HETATM 37 N N3 ZS2 . . . D 4 -13.124 24.767 19.218 1 138.61 ? N3 ZS2 701 A 1 HETATM 38 C C20 ZS2 . . . D 4 -9.785 26.25 19.814 1 151.19 ? C20 ZS2 701 A 1 HETATM 39 C C19 ZS2 . . . D 4 -8.546 25.865 20.314 1 148.48 ? C19 ZS2 701 A 1 HETATM 40 C C18 ZS2 . . . D 4 -8.362 24.562 20.763 1 155.65 ? C18 ZS2 701 A 1 HETATM 41 C C17 ZS2 . . . D 4 -9.413 23.645 20.711 1 163.36 ? C17 ZS2 701 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #