data_5HEB # _model_server_result.job_id 1C46mDZC71ekbwFYzS15-w _model_server_result.datetime_utc '2024-12-17 02:36:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5heb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5HEB # _exptl.entry_id 5HEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HEB _cell.length_a 89.771 _cell.length_b 89.771 _cell.length_c 89.771 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5HEB _atom_sites.fract_transf_matrix[1][1] 0.011139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011139 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 501 2 GOL GOL . D 3 GOL B 1 101 1 GOL GOL . E 4 HOH A 1 601 121 HOH HOH . E 4 HOH A 2 602 74 HOH HOH . E 4 HOH A 3 603 79 HOH HOH . E 4 HOH A 4 604 75 HOH HOH . E 4 HOH A 5 605 21 HOH HOH . E 4 HOH A 6 606 108 HOH HOH . E 4 HOH A 7 607 99 HOH HOH . E 4 HOH A 8 608 58 HOH HOH . E 4 HOH A 9 609 123 HOH HOH . E 4 HOH A 10 610 45 HOH HOH . E 4 HOH A 11 611 122 HOH HOH . E 4 HOH A 12 612 65 HOH HOH . E 4 HOH A 13 613 4 HOH HOH . E 4 HOH A 14 614 71 HOH HOH . E 4 HOH A 15 615 70 HOH HOH . E 4 HOH A 16 616 103 HOH HOH . E 4 HOH A 17 617 53 HOH HOH . E 4 HOH A 18 618 3 HOH HOH . E 4 HOH A 19 619 72 HOH HOH . E 4 HOH A 20 620 35 HOH HOH . E 4 HOH A 21 621 38 HOH HOH . E 4 HOH A 22 622 6 HOH HOH . E 4 HOH A 23 623 29 HOH HOH . E 4 HOH A 24 624 87 HOH HOH . E 4 HOH A 25 625 15 HOH HOH . E 4 HOH A 26 626 17 HOH HOH . E 4 HOH A 27 627 26 HOH HOH . E 4 HOH A 28 628 80 HOH HOH . E 4 HOH A 29 629 16 HOH HOH . E 4 HOH A 30 630 1 HOH HOH . E 4 HOH A 31 631 41 HOH HOH . E 4 HOH A 32 632 64 HOH HOH . E 4 HOH A 33 633 7 HOH HOH . E 4 HOH A 34 634 57 HOH HOH . E 4 HOH A 35 635 30 HOH HOH . E 4 HOH A 36 636 68 HOH HOH . E 4 HOH A 37 637 36 HOH HOH . E 4 HOH A 38 638 12 HOH HOH . E 4 HOH A 39 639 97 HOH HOH . E 4 HOH A 40 640 44 HOH HOH . E 4 HOH A 41 641 54 HOH HOH . E 4 HOH A 42 642 100 HOH HOH . E 4 HOH A 43 643 46 HOH HOH . E 4 HOH A 44 644 104 HOH HOH . E 4 HOH A 45 645 69 HOH HOH . E 4 HOH A 46 646 59 HOH HOH . E 4 HOH A 47 647 43 HOH HOH . E 4 HOH A 48 648 11 HOH HOH . E 4 HOH A 49 649 83 HOH HOH . E 4 HOH A 50 650 37 HOH HOH . E 4 HOH A 51 651 24 HOH HOH . E 4 HOH A 52 652 8 HOH HOH . E 4 HOH A 53 653 111 HOH HOH . E 4 HOH A 54 654 13 HOH HOH . E 4 HOH A 55 655 107 HOH HOH . E 4 HOH A 56 656 110 HOH HOH . E 4 HOH A 57 657 117 HOH HOH . E 4 HOH A 58 658 42 HOH HOH . E 4 HOH A 59 659 9 HOH HOH . E 4 HOH A 60 660 93 HOH HOH . E 4 HOH A 61 661 31 HOH HOH . E 4 HOH A 62 662 27 HOH HOH . E 4 HOH A 63 663 91 HOH HOH . E 4 HOH A 64 664 34 HOH HOH . E 4 HOH A 65 665 90 HOH HOH . E 4 HOH A 66 666 101 HOH HOH . E 4 HOH A 67 667 55 HOH HOH . E 4 HOH A 68 668 20 HOH HOH . E 4 HOH A 69 669 28 HOH HOH . E 4 HOH A 70 670 5 HOH HOH . E 4 HOH A 71 671 47 HOH HOH . E 4 HOH A 72 672 48 HOH HOH . E 4 HOH A 73 673 77 HOH HOH . E 4 HOH A 74 674 32 HOH HOH . E 4 HOH A 75 675 39 HOH HOH . E 4 HOH A 76 676 67 HOH HOH . E 4 HOH A 77 677 113 HOH HOH . E 4 HOH A 78 678 120 HOH HOH . E 4 HOH A 79 679 23 HOH HOH . E 4 HOH A 80 680 88 HOH HOH . E 4 HOH A 81 681 33 HOH HOH . E 4 HOH A 82 682 81 HOH HOH . E 4 HOH A 83 683 98 HOH HOH . E 4 HOH A 84 684 2 HOH HOH . E 4 HOH A 85 685 51 HOH HOH . E 4 HOH A 86 686 85 HOH HOH . E 4 HOH A 87 687 61 HOH HOH . E 4 HOH A 88 688 62 HOH HOH . E 4 HOH A 89 689 60 HOH HOH . E 4 HOH A 90 690 10 HOH HOH . E 4 HOH A 91 691 106 HOH HOH . E 4 HOH A 92 692 125 HOH HOH . E 4 HOH A 93 693 76 HOH HOH . E 4 HOH A 94 694 119 HOH HOH . E 4 HOH A 95 695 73 HOH HOH . E 4 HOH A 96 696 82 HOH HOH . E 4 HOH A 97 697 126 HOH HOH . E 4 HOH A 98 698 22 HOH HOH . E 4 HOH A 99 699 63 HOH HOH . E 4 HOH A 100 700 109 HOH HOH . E 4 HOH A 101 701 14 HOH HOH . E 4 HOH A 102 702 102 HOH HOH . E 4 HOH A 103 703 94 HOH HOH . E 4 HOH A 104 704 56 HOH HOH . E 4 HOH A 105 705 95 HOH HOH . E 4 HOH A 106 706 89 HOH HOH . E 4 HOH A 107 707 86 HOH HOH . E 4 HOH A 108 708 115 HOH HOH . E 4 HOH A 109 709 78 HOH HOH . E 4 HOH A 110 710 66 HOH HOH . E 4 HOH A 111 711 84 HOH HOH . E 4 HOH A 112 712 92 HOH HOH . E 4 HOH A 113 713 116 HOH HOH . F 4 HOH B 1 201 52 HOH HOH . F 4 HOH B 2 202 40 HOH HOH . F 4 HOH B 3 203 19 HOH HOH . F 4 HOH B 4 204 124 HOH HOH . F 4 HOH B 5 205 50 HOH HOH . F 4 HOH B 6 206 49 HOH HOH . F 4 HOH B 7 207 18 HOH HOH . F 4 HOH B 8 208 112 HOH HOH . F 4 HOH B 9 209 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 54.177 47.74 27.17 1 54.67 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . C 3 53.381 48.902 27.293 1 26.66 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . C 3 55.574 48.074 26.661 1 68.08 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . C 3 56.368 48.584 27.71 1 71.59 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . C 3 56.219 46.821 26.08 1 78.32 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . C 3 57.46 47.143 25.493 1 81.15 ? O3 GOL 501 A 1 HETATM 7 H H11 GOL . . . C 3 53.698 47.044 26.482 1 65.6 ? H11 GOL 501 A 1 HETATM 8 H H12 GOL . . . C 3 54.254 47.25 28.141 1 65.6 ? H12 GOL 501 A 1 HETATM 9 H HO1 GOL . . . C 3 52.472 48.649 27.558 1 32 ? HO1 GOL 501 A 1 HETATM 10 H H2 GOL . . . C 3 55.487 48.819 25.87 1 81.7 ? H2 GOL 501 A 1 HETATM 11 H HO2 GOL . . . C 3 56.461 47.904 28.409 1 85.91 ? HO2 GOL 501 A 1 HETATM 12 H H31 GOL . . . C 3 56.367 46.084 26.869 1 93.98 ? H31 GOL 501 A 1 HETATM 13 H H32 GOL . . . C 3 55.561 46.384 25.328 1 93.98 ? H32 GOL 501 A 1 HETATM 14 H HO3 GOL . . . C 3 57.972 47.714 26.104 1 97.38 ? HO3 GOL 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #