data_5HEZ # _model_server_result.job_id 2MMKKQDj3GAL0evjWxudag _model_server_result.datetime_utc '2024-11-24 14:46:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hez # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1204}' # _entry.id 5HEZ # _exptl.entry_id 5HEZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HEZ _cell.length_a 211.813 _cell.length_b 215.649 _cell.length_c 91.497 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HEZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA octameric 8 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,R 1 1 B,I,J,K,L,S 2 1 C,M,N,T 3 1 D,O,P,Q,U 4 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 5 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_445 -x-1/2,-y-1/2,z -1 0 0 0 -1 0 0 0 1 -105.9065 -107.8245 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 176 A GLU 1006 1_555 A N PTR 177 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale2 A C PTR 177 A PTR 1007 1_555 A N PTR 178 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale3 A C PTR 178 A PTR 1008 1_555 A N LYS 179 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 B C GLU 176 B GLU 1006 1_555 B N PTR 177 B PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale5 B C PTR 177 B PTR 1007 1_555 B N PTR 178 B PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale6 B C PTR 178 B PTR 1008 1_555 B N LYS 179 B LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale7 C C GLU 176 C GLU 1006 1_555 C N PTR 177 C PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale8 C C PTR 177 C PTR 1007 1_555 C N PTR 178 C PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale9 C C PTR 178 C PTR 1008 1_555 C N LYS 179 C LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale10 D C GLU 176 D GLU 1006 1_555 D N PTR 177 D PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale11 D C PTR 177 D PTR 1007 1_555 D N PTR 178 D PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale12 D C PTR 178 D PTR 1008 1_555 D N LYS 179 D LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? metalc ? metalc1 A ND1 HIS 56 A HIS 886 1_555 F ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc2 A NE2 HIS 61 A HIS 891 1_555 F ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc3 F ZN ZN . A ZN 1202 6_445 D ND1 HIS 56 D HIS 886 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc4 F ZN ZN . A ZN 1202 6_445 D NE2 HIS 61 D HIS 891 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc5 B ND1 HIS 56 B HIS 886 1_555 L ZN ZN . B ZN 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc6 B NE2 HIS 61 B HIS 891 1_555 L ZN ZN . B ZN 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc7 L ZN ZN . B ZN 1204 1_555 C ND1 HIS 56 C HIS 886 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc8 L ZN ZN . B ZN 1204 1_555 C NE2 HIS 61 C HIS 891 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5HEZ _atom_sites.fract_transf_matrix[1][1] 0.004721 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CL A 1 1201 3 CL CL . F 3 ZN A 1 1202 2 ZN ZN . G 4 1M3 A 1 1203 2 1M3 1M3 . H 4 1M3 A 1 1204 1 1M3 1M3 . I 2 CL B 1 1201 1 CL CL . J 4 1M3 B 1 1202 2 1M3 1M3 . K 4 1M3 B 1 1203 1 1M3 1M3 . L 3 ZN B 1 1204 1 ZN ZN . M 4 1M3 C 1 1201 1 1M3 1M3 . N 4 1M3 C 1 1202 2 1M3 1M3 . O 2 CL D 1 1201 2 CL CL . P 4 1M3 D 1 1202 2 1M3 1M3 . Q 4 1M3 D 1 1203 1 1M3 1M3 . R 5 HOH A 1 1301 6 HOH HOH . R 5 HOH A 2 1302 42 HOH HOH . R 5 HOH A 3 1303 32 HOH HOH . R 5 HOH A 4 1304 53 HOH HOH . R 5 HOH A 5 1305 69 HOH HOH . R 5 HOH A 6 1306 59 HOH HOH . R 5 HOH A 7 1307 111 HOH HOH . R 5 HOH A 8 1308 31 HOH HOH . R 5 HOH A 9 1309 14 HOH HOH . R 5 HOH A 10 1310 82 HOH HOH . R 5 HOH A 11 1311 81 HOH HOH . R 5 HOH A 12 1312 97 HOH HOH . R 5 HOH A 13 1313 109 HOH HOH . R 5 HOH A 14 1314 35 HOH HOH . R 5 HOH A 15 1315 102 HOH HOH . R 5 HOH A 16 1316 79 HOH HOH . R 5 HOH A 17 1317 36 HOH HOH . R 5 HOH A 18 1318 41 HOH HOH . R 5 HOH A 19 1319 85 HOH HOH . R 5 HOH A 20 1320 76 HOH HOH . R 5 HOH A 21 1321 23 HOH HOH . R 5 HOH A 22 1322 57 HOH HOH . R 5 HOH A 23 1323 89 HOH HOH . R 5 HOH A 24 1324 83 HOH HOH . R 5 HOH A 25 1325 21 HOH HOH . R 5 HOH A 26 1326 44 HOH HOH . R 5 HOH A 27 1327 17 HOH HOH . R 5 HOH A 28 1328 33 HOH HOH . R 5 HOH A 29 1329 56 HOH HOH . R 5 HOH A 30 1330 99 HOH HOH . R 5 HOH A 31 1331 100 HOH HOH . R 5 HOH A 32 1332 8 HOH HOH . R 5 HOH A 33 1333 30 HOH HOH . R 5 HOH A 34 1334 67 HOH HOH . S 5 HOH B 1 1301 87 HOH HOH . S 5 HOH B 2 1302 22 HOH HOH . S 5 HOH B 3 1303 91 HOH HOH . S 5 HOH B 4 1304 70 HOH HOH . S 5 HOH B 5 1305 61 HOH HOH . S 5 HOH B 6 1306 54 HOH HOH . S 5 HOH B 7 1307 110 HOH HOH . S 5 HOH B 8 1308 58 HOH HOH . S 5 HOH B 9 1309 107 HOH HOH . S 5 HOH B 10 1310 72 HOH HOH . S 5 HOH B 11 1311 29 HOH HOH . S 5 HOH B 12 1312 1 HOH HOH . S 5 HOH B 13 1313 114 HOH HOH . S 5 HOH B 14 1314 38 HOH HOH . S 5 HOH B 15 1315 37 HOH HOH . S 5 HOH B 16 1316 12 HOH HOH . S 5 HOH B 17 1317 78 HOH HOH . S 5 HOH B 18 1318 25 HOH HOH . S 5 HOH B 19 1319 84 HOH HOH . S 5 HOH B 20 1320 108 HOH HOH . S 5 HOH B 21 1321 18 HOH HOH . S 5 HOH B 22 1322 7 HOH HOH . S 5 HOH B 23 1323 20 HOH HOH . S 5 HOH B 24 1324 106 HOH HOH . S 5 HOH B 25 1325 86 HOH HOH . S 5 HOH B 26 1326 63 HOH HOH . S 5 HOH B 27 1327 39 HOH HOH . S 5 HOH B 28 1328 50 HOH HOH . S 5 HOH B 29 1329 16 HOH HOH . S 5 HOH B 30 1330 62 HOH HOH . S 5 HOH B 31 1331 68 HOH HOH . S 5 HOH B 32 1332 34 HOH HOH . S 5 HOH B 33 1333 13 HOH HOH . S 5 HOH B 34 1334 74 HOH HOH . S 5 HOH B 35 1335 105 HOH HOH . S 5 HOH B 36 1336 60 HOH HOH . S 5 HOH B 37 1337 104 HOH HOH . T 5 HOH C 1 1301 65 HOH HOH . T 5 HOH C 2 1302 51 HOH HOH . T 5 HOH C 3 1303 4 HOH HOH . T 5 HOH C 4 1304 71 HOH HOH . T 5 HOH C 5 1305 77 HOH HOH . T 5 HOH C 6 1306 28 HOH HOH . T 5 HOH C 7 1307 5 HOH HOH . T 5 HOH C 8 1308 27 HOH HOH . T 5 HOH C 9 1309 11 HOH HOH . T 5 HOH C 10 1310 2 HOH HOH . T 5 HOH C 11 1311 3 HOH HOH . T 5 HOH C 12 1312 46 HOH HOH . T 5 HOH C 13 1313 45 HOH HOH . T 5 HOH C 14 1314 19 HOH HOH . T 5 HOH C 15 1315 80 HOH HOH . T 5 HOH C 16 1316 96 HOH HOH . T 5 HOH C 17 1317 47 HOH HOH . T 5 HOH C 18 1318 113 HOH HOH . T 5 HOH C 19 1319 101 HOH HOH . T 5 HOH C 20 1320 98 HOH HOH . T 5 HOH C 21 1321 40 HOH HOH . T 5 HOH C 22 1322 92 HOH HOH . U 5 HOH D 1 1301 55 HOH HOH . U 5 HOH D 2 1302 115 HOH HOH . U 5 HOH D 3 1303 10 HOH HOH . U 5 HOH D 4 1304 90 HOH HOH . U 5 HOH D 5 1305 88 HOH HOH . U 5 HOH D 6 1306 48 HOH HOH . U 5 HOH D 7 1307 24 HOH HOH . U 5 HOH D 8 1308 64 HOH HOH . U 5 HOH D 9 1309 26 HOH HOH . U 5 HOH D 10 1310 9 HOH HOH . U 5 HOH D 11 1311 112 HOH HOH . U 5 HOH D 12 1312 94 HOH HOH . U 5 HOH D 13 1313 15 HOH HOH . U 5 HOH D 14 1314 93 HOH HOH . U 5 HOH D 15 1315 43 HOH HOH . U 5 HOH D 16 1316 95 HOH HOH . U 5 HOH D 17 1317 75 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 3 _atom_site.Cartn_x -39.588 _atom_site.Cartn_y -26.624 _atom_site.Cartn_z 19.107 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.23 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1204 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #