data_5HF0 # _model_server_result.job_id ivqnrRO3ykFDykZZcKsmEg _model_server_result.datetime_utc '2025-02-17 16:41:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hf0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5HF0 # _exptl.entry_id 5HF0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Tricyclic NADPH' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HF0 _cell.length_a 79.098 _cell.length_b 79.098 _cell.length_c 107.931 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HF0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id XNP _chem_comp.mon_nstd_flag . _chem_comp.name 'Tricyclic NADPH' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3' C3' XNP sing 510 n n C3' C2' XNP sing 511 n n C3' C4' XNP sing 512 n n C2' O2' XNP sing 513 n n C2' C1' XNP sing 514 n n O2' CAA XNP sing 515 n n CAA CAB XNP sing 516 n n CAA NAF XNP sing 517 n n CAB CAC XNP sing 518 n n CAC CAD XNP sing 519 n n CAD CBT XNP sing 520 n n CAD CAE XNP doub 521 n n CBT OBV XNP doub 522 n n CBT NBU XNP sing 523 n n CAE NAF XNP sing 524 n n NAF C1' XNP sing 525 n n C1' O4' XNP sing 526 n n O4' C4' XNP sing 527 n n C4' C5' XNP sing 528 n n C5' O5' XNP sing 529 n n O5' PAN XNP sing 530 n n PAN OBP XNP doub 531 n n PAN OBO XNP sing 532 n n PAN OAO XNP sing 533 n n OAO PAP XNP sing 534 n n PAP OBQ XNP doub 535 n n PAP OBR XNP sing 536 n n PAP OAQ XNP sing 537 n n OAQ CAR XNP sing 538 n n CAR CAS XNP sing 539 n n CAS OAW XNP sing 540 n n CAS CAT XNP sing 541 n n OAW CAV XNP sing 542 n n CAT OAZ XNP sing 543 n n CAT CAU XNP sing 544 n n CAU OAY XNP sing 545 n n CAU CAV XNP sing 546 n n OAY PBA XNP sing 547 n n PBA OBB XNP doub 548 n n PBA OBC XNP sing 549 n n PBA OBD XNP sing 550 n n CAV NAX XNP sing 551 n n NAX CBE XNP sing 552 n y NAX CBH XNP sing 553 n y CBE NBF XNP doub 554 n y NBF CBG XNP sing 555 n y CBG CBH XNP doub 556 n y CBG CBI XNP sing 557 n y CBH NBL XNP sing 558 n y NBL CBK XNP doub 559 n y CBK NBJ XNP sing 560 n y NBJ CBI XNP doub 561 n y CBI NBM XNP sing 562 n n O3' H1 XNP sing 563 n n C3' H2 XNP sing 564 n n C2' H3 XNP sing 565 n n CAA H4 XNP sing 566 n n CAB H5 XNP sing 567 n n CAB H6 XNP sing 568 n n CAC H7 XNP sing 569 n n CAC H8 XNP sing 570 n n NBU H9 XNP sing 571 n n NBU H10 XNP sing 572 n n CAE H11 XNP sing 573 n n C1' H12 XNP sing 574 n n C4' H13 XNP sing 575 n n C5' H14 XNP sing 576 n n C5' H15 XNP sing 577 n n OBO H16 XNP sing 578 n n OBR H17 XNP sing 579 n n CAR H18 XNP sing 580 n n CAR H19 XNP sing 581 n n CAS H20 XNP sing 582 n n CAT H21 XNP sing 583 n n OAZ H22 XNP sing 584 n n CAU H23 XNP sing 585 n n OBC H24 XNP sing 586 n n OBD H25 XNP sing 587 n n CAV H26 XNP sing 588 n n CBE H27 XNP sing 589 n n CBK H30 XNP sing 590 n n NBM H31 XNP sing 591 n n NBM H32 XNP sing 592 n n # _atom_sites.entry_id 5HF0 _atom_sites.fract_transf_matrix[1][1] 0.012643 _atom_sites.fract_transf_matrix[1][2] 0.007299 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL X 1 201 222 GOL GOL . C 3 U06 X 1 202 1 U06 DRG . D 4 XNP X 1 203 1 XNP ANH . E 5 NAP X 1 204 207 NAP NAP . F 6 HOH X 1 301 39 HOH HOH . F 6 HOH X 2 302 10 HOH HOH . F 6 HOH X 3 303 68 HOH HOH . F 6 HOH X 4 304 20 HOH HOH . F 6 HOH X 5 305 43 HOH HOH . F 6 HOH X 6 306 50 HOH HOH . F 6 HOH X 7 307 35 HOH HOH . F 6 HOH X 8 308 2 HOH HOH . F 6 HOH X 9 309 13 HOH HOH . F 6 HOH X 10 310 63 HOH HOH . F 6 HOH X 11 311 58 HOH HOH . F 6 HOH X 12 312 21 HOH HOH . F 6 HOH X 13 313 38 HOH HOH . F 6 HOH X 14 314 37 HOH HOH . F 6 HOH X 15 315 25 HOH HOH . F 6 HOH X 16 316 32 HOH HOH . F 6 HOH X 17 317 26 HOH HOH . F 6 HOH X 18 318 67 HOH HOH . F 6 HOH X 19 319 40 HOH HOH . F 6 HOH X 20 320 64 HOH HOH . F 6 HOH X 21 321 55 HOH HOH . F 6 HOH X 22 322 68 HOH HOH . F 6 HOH X 23 323 27 HOH HOH . F 6 HOH X 24 324 56 HOH HOH . F 6 HOH X 25 325 8 HOH HOH . F 6 HOH X 26 326 60 HOH HOH . F 6 HOH X 27 327 23 HOH HOH . F 6 HOH X 28 328 52 HOH HOH . F 6 HOH X 29 329 33 HOH HOH . F 6 HOH X 30 330 9 HOH HOH . F 6 HOH X 31 331 54 HOH HOH . F 6 HOH X 32 332 7 HOH HOH . F 6 HOH X 33 333 24 HOH HOH . F 6 HOH X 34 334 48 HOH HOH . F 6 HOH X 35 335 75 HOH HOH . F 6 HOH X 36 336 3 HOH HOH . F 6 HOH X 37 337 5 HOH HOH . F 6 HOH X 38 338 42 HOH HOH . F 6 HOH X 39 339 1 HOH HOH . F 6 HOH X 40 340 65 HOH HOH . F 6 HOH X 41 341 62 HOH HOH . F 6 HOH X 42 342 4 HOH HOH . F 6 HOH X 43 343 53 HOH HOH . F 6 HOH X 44 344 59 HOH HOH . F 6 HOH X 45 345 22 HOH HOH . F 6 HOH X 46 346 71 HOH HOH . F 6 HOH X 47 347 61 HOH HOH . F 6 HOH X 48 348 6 HOH HOH . F 6 HOH X 49 349 14 HOH HOH . F 6 HOH X 50 350 70 HOH HOH . F 6 HOH X 51 351 73 HOH HOH . F 6 HOH X 52 352 34 HOH HOH . F 6 HOH X 53 353 29 HOH HOH . F 6 HOH X 54 354 41 HOH HOH . F 6 HOH X 55 355 11 HOH HOH . F 6 HOH X 56 356 19 HOH HOH . F 6 HOH X 57 357 69 HOH HOH . F 6 HOH X 58 358 18 HOH HOH . F 6 HOH X 59 359 74 HOH HOH . F 6 HOH X 60 360 12 HOH HOH . F 6 HOH X 61 361 66 HOH HOH . F 6 HOH X 62 362 69 HOH HOH . F 6 HOH X 63 363 31 HOH HOH . F 6 HOH X 64 364 30 HOH HOH . F 6 HOH X 65 365 47 HOH HOH . F 6 HOH X 66 366 75 HOH HOH . F 6 HOH X 67 367 76 HOH HOH . F 6 HOH X 68 368 28 HOH HOH . F 6 HOH X 69 369 16 HOH HOH . F 6 HOH X 70 370 72 HOH HOH . F 6 HOH X 71 371 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3' XNP . B . D 4 44.716 36.623 121.001 0.41 18.75 ? O3' XNP 203 X 1 HETATM 2 C C3' XNP . B . D 4 44.779 36.549 119.567 0.41 19.24 ? C3' XNP 203 X 1 HETATM 3 C C2' XNP . B . D 4 43.458 36.127 118.943 0.41 19.12 ? C2' XNP 203 X 1 HETATM 4 O O2' XNP . B . D 4 42.278 36.123 119.79 0.41 17 ? O2' XNP 203 X 1 HETATM 5 C CAA XNP . B . D 4 41.349 36.963 119.027 0.41 20 ? CAA XNP 203 X 1 HETATM 6 C CAB XNP . B . D 4 39.907 36.545 119.065 0.41 22.31 ? CAB XNP 203 X 1 HETATM 7 C CAC XNP . B . D 4 39.164 37.638 118.319 0.41 17.21 ? CAC XNP 203 X 1 HETATM 8 C CAD XNP . B . D 4 39.837 38.002 117.139 0.41 16.78 ? CAD XNP 203 X 1 HETATM 9 C CBT XNP . B . D 4 39.199 38.79 116.199 0.41 16.12 ? CBT XNP 203 X 1 HETATM 10 O OBV XNP . B . D 4 39.794 39.12 115.176 0.41 19.14 ? OBV XNP 203 X 1 HETATM 11 N NBU XNP . B . D 4 37.954 39.155 116.493 0.41 12.85 ? NBU XNP 203 X 1 HETATM 12 C CAE XNP . B . D 4 41.166 37.676 116.873 0.41 16.71 ? CAE XNP 203 X 1 HETATM 13 N NAF XNP . B . D 4 41.868 36.879 117.661 0.41 21.27 ? NAF XNP 203 X 1 HETATM 14 C C1' XNP . B . D 4 43.145 37.384 118.168 0.41 18.88 ? C1' XNP 203 X 1 HETATM 15 O O4' XNP . B . D 4 44.409 37.67 117.571 0.41 15.44 ? O4' XNP 203 X 1 HETATM 16 C C4' XNP . B . D 4 44.949 37.937 118.91 0.41 15.1 ? C4' XNP 203 X 1 HETATM 17 C C5' XNP . B . D 4 46.371 38.494 119.118 0.41 17.12 ? C5' XNP 203 X 1 HETATM 18 O O5' XNP . B . D 4 47.308 37.934 118.203 0.41 15.45 ? O5' XNP 203 X 1 HETATM 19 P PAN XNP . B . D 4 47.369 38.444 116.672 0.41 11.52 ? PAN XNP 203 X 1 HETATM 20 O OBP XNP . B . D 4 48.936 38.646 116.35 0.41 13.29 ? OBP XNP 203 X 1 HETATM 21 O OBO XNP . B . D 4 46.588 39.685 116.475 0.41 16.64 ? OBO XNP 203 X 1 HETATM 22 O OAO XNP . B . D 4 46.886 37.214 115.76 0.41 17.89 ? OAO XNP 203 X 1 HETATM 23 P PAP XNP . B . D 4 46.392 37.47 114.209 0.41 15.89 ? PAP XNP 203 X 1 HETATM 24 O OBQ XNP . B . D 4 45.375 36.281 113.702 0.41 15.13 ? OBQ XNP 203 X 1 HETATM 25 O OBR XNP . B . D 4 47.286 38.198 113.251 0.41 15.78 ? OBR XNP 203 X 1 HETATM 26 O OAQ XNP . B . D 4 47.435 36.233 113.913 0.41 14.69 ? OAQ XNP 203 X 1 HETATM 27 C CAR XNP . B . D 4 48.844 36.32 114.198 0.41 14.28 ? CAR XNP 203 X 1 HETATM 28 C CAS XNP . B . D 4 49.648 35.311 113.362 0.41 16.4 ? CAS XNP 203 X 1 HETATM 29 O OAW XNP . B . D 4 49.422 35.467 111.934 0.41 18.76 ? OAW XNP 203 X 1 HETATM 30 C CAT XNP . B . D 4 51.151 35.564 113.471 0.41 18.04 ? CAT XNP 203 X 1 HETATM 31 O OAZ XNP . B . D 4 51.673 35.161 114.744 0.41 16.02 ? OAZ XNP 203 X 1 HETATM 32 C CAU XNP . B . D 4 51.587 34.631 112.379 0.41 15.71 ? CAU XNP 203 X 1 HETATM 33 O OAY XNP . B . D 4 51.203 33.287 112.667 0.41 17.07 ? OAY XNP 203 X 1 HETATM 34 P PBA XNP . B . D 4 52.419 32.239 112.934 0.41 17.1 ? PBA XNP 203 X 1 HETATM 35 O OBB XNP . B . D 4 51.722 30.783 113.038 0.41 14.73 ? OBB XNP 203 X 1 HETATM 36 O OBC XNP . B . D 4 52.922 32.598 114.428 0.41 12.79 ? OBC XNP 203 X 1 HETATM 37 O OBD XNP . B . D 4 53.473 32.33 111.896 0.41 16.01 ? OBD XNP 203 X 1 HETATM 38 C CAV XNP . B . D 4 50.604 35.175 111.153 0.41 18.53 ? CAV XNP 203 X 1 HETATM 39 N NAX XNP . B . D 4 51.055 36.236 110.429 0.41 19.49 ? NAX XNP 203 X 1 HETATM 40 C CBE XNP . B . D 4 50.472 37.529 110.504 0.41 16.7 ? CBE XNP 203 X 1 HETATM 41 N NBF XNP . B . D 4 51.368 38.318 109.585 0.41 18.53 ? NBF XNP 203 X 1 HETATM 42 C CBG XNP . B . D 4 52.213 37.449 109.016 0.41 21.81 ? CBG XNP 203 X 1 HETATM 43 C CBH XNP . B . D 4 51.786 36.196 109.453 0.41 19.98 ? CBH XNP 203 X 1 HETATM 44 N NBL XNP . B . D 4 52.664 35.051 109.113 0.41 19.75 ? NBL XNP 203 X 1 HETATM 45 C CBK XNP . B . D 4 53.646 35.229 108.14 0.41 20.07 ? CBK XNP 203 X 1 HETATM 46 N NBJ XNP . B . D 4 53.901 36.525 107.671 0.41 20.75 ? NBJ XNP 203 X 1 HETATM 47 C CBI XNP . B . D 4 53.192 37.575 108.122 0.41 24.03 ? CBI XNP 203 X 1 HETATM 48 N NBM XNP . B . D 4 53.433 38.81 107.692 0.41 22.18 ? NBM XNP 203 X 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #