data_5HF0 # _model_server_result.job_id iUAhaYs252KURHFEhUaTYQ _model_server_result.datetime_utc '2024-11-06 20:45:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hf0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5HF0 # _exptl.entry_id 5HF0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HF0 _cell.length_a 79.098 _cell.length_b 79.098 _cell.length_c 107.931 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HF0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 5HF0 _atom_sites.fract_transf_matrix[1][1] 0.012643 _atom_sites.fract_transf_matrix[1][2] 0.007299 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL X 1 201 222 GOL GOL . C 3 U06 X 1 202 1 U06 DRG . D 4 XNP X 1 203 1 XNP ANH . E 5 NAP X 1 204 207 NAP NAP . F 6 HOH X 1 301 39 HOH HOH . F 6 HOH X 2 302 10 HOH HOH . F 6 HOH X 3 303 68 HOH HOH . F 6 HOH X 4 304 20 HOH HOH . F 6 HOH X 5 305 43 HOH HOH . F 6 HOH X 6 306 50 HOH HOH . F 6 HOH X 7 307 35 HOH HOH . F 6 HOH X 8 308 2 HOH HOH . F 6 HOH X 9 309 13 HOH HOH . F 6 HOH X 10 310 63 HOH HOH . F 6 HOH X 11 311 58 HOH HOH . F 6 HOH X 12 312 21 HOH HOH . F 6 HOH X 13 313 38 HOH HOH . F 6 HOH X 14 314 37 HOH HOH . F 6 HOH X 15 315 25 HOH HOH . F 6 HOH X 16 316 32 HOH HOH . F 6 HOH X 17 317 26 HOH HOH . F 6 HOH X 18 318 67 HOH HOH . F 6 HOH X 19 319 40 HOH HOH . F 6 HOH X 20 320 64 HOH HOH . F 6 HOH X 21 321 55 HOH HOH . F 6 HOH X 22 322 68 HOH HOH . F 6 HOH X 23 323 27 HOH HOH . F 6 HOH X 24 324 56 HOH HOH . F 6 HOH X 25 325 8 HOH HOH . F 6 HOH X 26 326 60 HOH HOH . F 6 HOH X 27 327 23 HOH HOH . F 6 HOH X 28 328 52 HOH HOH . F 6 HOH X 29 329 33 HOH HOH . F 6 HOH X 30 330 9 HOH HOH . F 6 HOH X 31 331 54 HOH HOH . F 6 HOH X 32 332 7 HOH HOH . F 6 HOH X 33 333 24 HOH HOH . F 6 HOH X 34 334 48 HOH HOH . F 6 HOH X 35 335 75 HOH HOH . F 6 HOH X 36 336 3 HOH HOH . F 6 HOH X 37 337 5 HOH HOH . F 6 HOH X 38 338 42 HOH HOH . F 6 HOH X 39 339 1 HOH HOH . F 6 HOH X 40 340 65 HOH HOH . F 6 HOH X 41 341 62 HOH HOH . F 6 HOH X 42 342 4 HOH HOH . F 6 HOH X 43 343 53 HOH HOH . F 6 HOH X 44 344 59 HOH HOH . F 6 HOH X 45 345 22 HOH HOH . F 6 HOH X 46 346 71 HOH HOH . F 6 HOH X 47 347 61 HOH HOH . F 6 HOH X 48 348 6 HOH HOH . F 6 HOH X 49 349 14 HOH HOH . F 6 HOH X 50 350 70 HOH HOH . F 6 HOH X 51 351 73 HOH HOH . F 6 HOH X 52 352 34 HOH HOH . F 6 HOH X 53 353 29 HOH HOH . F 6 HOH X 54 354 41 HOH HOH . F 6 HOH X 55 355 11 HOH HOH . F 6 HOH X 56 356 19 HOH HOH . F 6 HOH X 57 357 69 HOH HOH . F 6 HOH X 58 358 18 HOH HOH . F 6 HOH X 59 359 74 HOH HOH . F 6 HOH X 60 360 12 HOH HOH . F 6 HOH X 61 361 66 HOH HOH . F 6 HOH X 62 362 69 HOH HOH . F 6 HOH X 63 363 31 HOH HOH . F 6 HOH X 64 364 30 HOH HOH . F 6 HOH X 65 365 47 HOH HOH . F 6 HOH X 66 366 75 HOH HOH . F 6 HOH X 67 367 76 HOH HOH . F 6 HOH X 68 368 28 HOH HOH . F 6 HOH X 69 369 16 HOH HOH . F 6 HOH X 70 370 72 HOH HOH . F 6 HOH X 71 371 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . A . E 5 46.356 37.041 114.387 0.6 17.22 ? PA NAP 204 X 1 HETATM 2 O O1A NAP . A . E 5 46.456 38.285 113.589 0.6 13.85 ? O1A NAP 204 X 1 HETATM 3 O O2A NAP . A . E 5 45.04 36.377 114.255 0.6 12.69 ? O2A NAP 204 X 1 HETATM 4 O O5B NAP . A . E 5 47.565 36.03 114.023 0.6 14.71 ? O5B NAP 204 X 1 HETATM 5 C C5B NAP . A . E 5 48.923 36.423 114.05 0.6 14.07 ? C5B NAP 204 X 1 HETATM 6 C C4B NAP . A . E 5 49.705 35.36 113.297 0.6 16.38 ? C4B NAP 204 X 1 HETATM 7 O O4B NAP . A . E 5 49.394 35.46 111.92 0.6 20.1 ? O4B NAP 204 X 1 HETATM 8 C C3B NAP . A . E 5 51.228 35.475 113.378 0.6 18.02 ? C3B NAP 204 X 1 HETATM 9 O O3B NAP . A . E 5 51.752 34.839 114.516 0.6 16.09 ? O3B NAP 204 X 1 HETATM 10 C C2B NAP . A . E 5 51.646 34.779 112.103 0.6 15.18 ? C2B NAP 204 X 1 HETATM 11 O O2B NAP . A . E 5 51.558 33.386 112.263 0.6 18.71 ? O2B NAP 204 X 1 HETATM 12 C C1B NAP . A . E 5 50.534 35.147 111.141 0.6 18.42 ? C1B NAP 204 X 1 HETATM 13 N N9A NAP . A . E 5 51.029 36.307 110.395 0.6 17.4 ? N9A NAP 204 X 1 HETATM 14 C C8A NAP . A . E 5 50.701 37.63 110.557 0.6 16.5 ? C8A NAP 204 X 1 HETATM 15 N N7A NAP . A . E 5 51.422 38.358 109.664 0.6 18.53 ? N7A NAP 204 X 1 HETATM 16 C C5A NAP . A . E 5 52.213 37.515 108.955 0.6 21.76 ? C5A NAP 204 X 1 HETATM 17 C C6A NAP . A . E 5 53.138 37.708 107.933 0.6 24.33 ? C6A NAP 204 X 1 HETATM 18 N N6A NAP . A . E 5 53.384 38.931 107.469 0.6 21.93 ? N6A NAP 204 X 1 HETATM 19 N N1A NAP . A . E 5 53.8 36.619 107.39 0.6 20.44 ? N1A NAP 204 X 1 HETATM 20 C C2A NAP . A . E 5 53.55 35.348 107.867 0.6 20.17 ? C2A NAP 204 X 1 HETATM 21 N N3A NAP . A . E 5 52.636 35.164 108.884 0.6 19.84 ? N3A NAP 204 X 1 HETATM 22 C C4A NAP . A . E 5 51.979 36.226 109.414 0.6 20.1 ? C4A NAP 204 X 1 HETATM 23 O O3 NAP . A . E 5 46.613 37.328 115.949 0.6 16.94 ? O3 NAP 204 X 1 HETATM 24 P PN NAP . A . E 5 46.306 38.556 116.929 0.6 13.31 ? PN NAP 204 X 1 HETATM 25 O O1N NAP . A . E 5 46.735 38.153 118.286 0.6 15.98 ? O1N NAP 204 X 1 HETATM 26 O O2N NAP . A . E 5 46.908 39.761 116.323 0.6 16.41 ? O2N NAP 204 X 1 HETATM 27 O O5D NAP . A . E 5 44.692 38.653 116.915 0.6 16.27 ? O5D NAP 204 X 1 HETATM 28 C C5D NAP . A . E 5 43.903 37.642 117.523 0.6 14.86 ? C5D NAP 204 X 1 HETATM 29 C C4D NAP . A . E 5 42.735 38.252 118.298 0.6 22.61 ? C4D NAP 204 X 1 HETATM 30 O O4D NAP . A . E 5 41.934 39.018 117.416 0.6 19.41 ? O4D NAP 204 X 1 HETATM 31 C C3D NAP . A . E 5 41.801 37.202 118.907 0.6 21.49 ? C3D NAP 204 X 1 HETATM 32 O O3D NAP . A . E 5 41.497 37.55 120.234 0.6 17.47 ? O3D NAP 204 X 1 HETATM 33 C C2D NAP . A . E 5 40.519 37.278 118.11 0.6 16.28 ? C2D NAP 204 X 1 HETATM 34 O O2D NAP . A . E 5 39.391 37.14 118.94 0.6 18.52 ? O2D NAP 204 X 1 HETATM 35 C C1D NAP . A . E 5 40.572 38.704 117.627 0.6 13.61 ? C1D NAP 204 X 1 HETATM 36 N N1N NAP . A . E 5 39.756 38.912 116.426 0.6 15.93 ? N1N NAP 204 X 1 HETATM 37 C C2N NAP . A . E 5 38.771 39.856 116.504 0.6 16.6 ? C2N NAP 204 X 1 HETATM 38 C C3N NAP . A . E 5 37.962 40.125 115.415 0.6 15.84 ? C3N NAP 204 X 1 HETATM 39 C C7N NAP . A . E 5 36.773 41.021 115.596 0.6 13.41 ? C7N NAP 204 X 1 HETATM 40 O O7N NAP . A . E 5 36.05 41.438 114.462 0.6 14.55 ? O7N NAP 204 X 1 HETATM 41 N N7N NAP . A . E 5 36.433 41.398 116.828 0.6 10.2 ? N7N NAP 204 X 1 HETATM 42 C C4N NAP . A . E 5 38.17 39.418 114.235 0.6 15.36 ? C4N NAP 204 X 1 HETATM 43 C C5N NAP . A . E 5 39.166 38.444 114.17 0.6 12.76 ? C5N NAP 204 X 1 HETATM 44 C C6N NAP . A . E 5 39.965 38.201 115.281 0.6 16.22 ? C6N NAP 204 X 1 HETATM 45 P P2B NAP . A . E 5 52.794 32.455 112.723 0.6 14.38 ? P2B NAP 204 X 1 HETATM 46 O O1X NAP . A . E 5 53.211 32.88 114.113 0.6 12.6 ? O1X NAP 204 X 1 HETATM 47 O O2X NAP . A . E 5 52.271 31.033 112.746 0.6 17.17 ? O2X NAP 204 X 1 HETATM 48 O O3X NAP . A . E 5 53.923 32.601 111.742 0.6 17.18 ? O3X NAP 204 X 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #