data_5HF2 # _model_server_result.job_id OIKh-Rd7c6twOVjEOWqxFg _model_server_result.datetime_utc '2024-11-24 05:57:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hf2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5HF2 # _exptl.entry_id 5HF2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.446 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[3-[3-[2,4-bis(azanyl)-6-ethyl-pyrimidin-5-yl]prop-2-ynyl]-5-methoxy-phenyl]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HF2 _cell.length_a 79.022 _cell.length_b 79.022 _cell.length_c 108.247 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H22 N4 O3' _chem_comp.formula_weight 402.446 _chem_comp.id U75 _chem_comp.mon_nstd_flag . _chem_comp.name '4-[3-[3-[2,4-bis(azanyl)-6-ethyl-pyrimidin-5-yl]prop-2-ynyl]-5-methoxy-phenyl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "3'-(3-(2,4-diamino-6-ethylpyrimidin-5-yl)prop-2-yn-1-yl)-5'-methoxy-[1,1'-biphenyl]-4-carboxylic acid;UCP1175" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAG C6 U75 sing 358 n n N1 C6 U75 doub 359 n y N1 C2 U75 sing 360 n y NAJ C2 U75 sing 361 n n C6 C5 U75 sing 362 n y C2 N3 U75 doub 363 n y OBA CAZ U75 doub 364 n n C5 CAK U75 sing 365 n n C5 C4 U75 doub 366 n y N3 C4 U75 sing 367 n y CAX CAY U75 doub 368 n y CAX CAW U75 sing 369 n y CAK CAL U75 trip 370 n n C4 CAH U75 sing 371 n n CAY CAT U75 sing 372 n y CAL CAM U75 sing 373 n n CAZ CAW U75 sing 374 n n CAZ OBD U75 sing 375 n n CAI CAH U75 sing 376 n n CAW CAV U75 doub 377 n y CAM CAN U75 sing 378 n n CAO CAN U75 doub 379 n y CAO CAP U75 sing 380 n y CAN CAS U75 sing 381 n y CAT CAP U75 sing 382 n n CAT CAU U75 doub 383 n y CAP CAQ U75 doub 384 n y CAV CAU U75 sing 385 n y CAS CAR U75 doub 386 n y CAQ CAR U75 sing 387 n y CAR OBB U75 sing 388 n n OBB CBC U75 sing 389 n n CAI H1 U75 sing 390 n n CAI H2 U75 sing 391 n n CAI H3 U75 sing 392 n n CAH H4 U75 sing 393 n n CAH H5 U75 sing 394 n n NAJ H6 U75 sing 395 n n NAJ H7 U75 sing 396 n n NAG H8 U75 sing 397 n n NAG H9 U75 sing 398 n n CAM H10 U75 sing 399 n n CAM H11 U75 sing 400 n n CAO H12 U75 sing 401 n n CAS H13 U75 sing 402 n n CBC H14 U75 sing 403 n n CBC H15 U75 sing 404 n n CBC H16 U75 sing 405 n n CAQ H17 U75 sing 406 n n CAU H18 U75 sing 407 n n CAV H19 U75 sing 408 n n OBD H20 U75 sing 409 n n CAX H21 U75 sing 410 n n CAY H22 U75 sing 411 n n # _atom_sites.entry_id 5HF2 _atom_sites.fract_transf_matrix[1][1] 0.012655 _atom_sites.fract_transf_matrix[1][2] 0.007306 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XNP X 1 201 1 XNP ANH . C 3 U75 X 1 202 1 U75 DRG . D 4 GOL X 1 203 221 GOL GOL . E 5 HOH X 1 301 72 HOH HOH . E 5 HOH X 2 302 78 HOH HOH . E 5 HOH X 3 303 49 HOH HOH . E 5 HOH X 4 304 8 HOH HOH . E 5 HOH X 5 305 51 HOH HOH . E 5 HOH X 6 306 43 HOH HOH . E 5 HOH X 7 307 66 HOH HOH . E 5 HOH X 8 308 62 HOH HOH . E 5 HOH X 9 309 98 HOH HOH . E 5 HOH X 10 310 18 HOH HOH . E 5 HOH X 11 311 71 HOH HOH . E 5 HOH X 12 312 79 HOH HOH . E 5 HOH X 13 313 96 HOH HOH . E 5 HOH X 14 314 42 HOH HOH . E 5 HOH X 15 315 99 HOH HOH . E 5 HOH X 16 316 24 HOH HOH . E 5 HOH X 17 317 85 HOH HOH . E 5 HOH X 18 318 88 HOH HOH . E 5 HOH X 19 319 4 HOH HOH . E 5 HOH X 20 320 28 HOH HOH . E 5 HOH X 21 321 41 HOH HOH . E 5 HOH X 22 322 32 HOH HOH . E 5 HOH X 23 323 111 HOH HOH . E 5 HOH X 24 324 34 HOH HOH . E 5 HOH X 25 325 106 HOH HOH . E 5 HOH X 26 326 105 HOH HOH . E 5 HOH X 27 327 113 HOH HOH . E 5 HOH X 28 328 48 HOH HOH . E 5 HOH X 29 329 17 HOH HOH . E 5 HOH X 30 330 60 HOH HOH . E 5 HOH X 31 331 7 HOH HOH . E 5 HOH X 32 332 44 HOH HOH . E 5 HOH X 33 333 80 HOH HOH . E 5 HOH X 34 334 83 HOH HOH . E 5 HOH X 35 335 6 HOH HOH . E 5 HOH X 36 336 29 HOH HOH . E 5 HOH X 37 337 46 HOH HOH . E 5 HOH X 38 338 12 HOH HOH . E 5 HOH X 39 339 116 HOH HOH . E 5 HOH X 40 340 27 HOH HOH . E 5 HOH X 41 341 55 HOH HOH . E 5 HOH X 42 342 15 HOH HOH . E 5 HOH X 43 343 58 HOH HOH . E 5 HOH X 44 344 47 HOH HOH . E 5 HOH X 45 345 37 HOH HOH . E 5 HOH X 46 346 40 HOH HOH . E 5 HOH X 47 347 59 HOH HOH . E 5 HOH X 48 348 50 HOH HOH . E 5 HOH X 49 349 109 HOH HOH . E 5 HOH X 50 350 19 HOH HOH . E 5 HOH X 51 351 90 HOH HOH . E 5 HOH X 52 352 119 HOH HOH . E 5 HOH X 53 353 115 HOH HOH . E 5 HOH X 54 354 82 HOH HOH . E 5 HOH X 55 355 84 HOH HOH . E 5 HOH X 56 356 70 HOH HOH . E 5 HOH X 57 357 100 HOH HOH . E 5 HOH X 58 358 77 HOH HOH . E 5 HOH X 59 359 11 HOH HOH . E 5 HOH X 60 360 16 HOH HOH . E 5 HOH X 61 361 81 HOH HOH . E 5 HOH X 62 362 10 HOH HOH . E 5 HOH X 63 363 125 HOH HOH . E 5 HOH X 64 364 65 HOH HOH . E 5 HOH X 65 365 35 HOH HOH . E 5 HOH X 66 366 107 HOH HOH . E 5 HOH X 67 367 3 HOH HOH . E 5 HOH X 68 368 13 HOH HOH . E 5 HOH X 69 369 64 HOH HOH . E 5 HOH X 70 370 20 HOH HOH . E 5 HOH X 71 371 33 HOH HOH . E 5 HOH X 72 372 39 HOH HOH . E 5 HOH X 73 373 103 HOH HOH . E 5 HOH X 74 374 5 HOH HOH . E 5 HOH X 75 375 36 HOH HOH . E 5 HOH X 76 376 38 HOH HOH . E 5 HOH X 77 377 117 HOH HOH . E 5 HOH X 78 378 1 HOH HOH . E 5 HOH X 79 379 2 HOH HOH . E 5 HOH X 80 380 25 HOH HOH . E 5 HOH X 81 381 126 HOH HOH . E 5 HOH X 82 382 23 HOH HOH . E 5 HOH X 83 383 67 HOH HOH . E 5 HOH X 84 384 104 HOH HOH . E 5 HOH X 85 385 22 HOH HOH . E 5 HOH X 86 386 76 HOH HOH . E 5 HOH X 87 387 86 HOH HOH . E 5 HOH X 88 388 9 HOH HOH . E 5 HOH X 89 389 68 HOH HOH . E 5 HOH X 90 390 63 HOH HOH . E 5 HOH X 91 391 56 HOH HOH . E 5 HOH X 92 392 122 HOH HOH . E 5 HOH X 93 393 73 HOH HOH . E 5 HOH X 94 394 95 HOH HOH . E 5 HOH X 95 395 121 HOH HOH . E 5 HOH X 96 396 93 HOH HOH . E 5 HOH X 97 397 21 HOH HOH . E 5 HOH X 98 398 130 HOH HOH . E 5 HOH X 99 399 54 HOH HOH . E 5 HOH X 100 400 110 HOH HOH . E 5 HOH X 101 401 14 HOH HOH . E 5 HOH X 102 402 120 HOH HOH . E 5 HOH X 103 403 74 HOH HOH . E 5 HOH X 104 404 87 HOH HOH . E 5 HOH X 105 405 61 HOH HOH . E 5 HOH X 106 406 89 HOH HOH . E 5 HOH X 107 407 75 HOH HOH . E 5 HOH X 108 408 26 HOH HOH . E 5 HOH X 109 409 97 HOH HOH . E 5 HOH X 110 410 91 HOH HOH . E 5 HOH X 111 411 101 HOH HOH . E 5 HOH X 112 412 132 HOH HOH . E 5 HOH X 113 413 31 HOH HOH . E 5 HOH X 114 414 45 HOH HOH . E 5 HOH X 115 415 30 HOH HOH . E 5 HOH X 116 416 52 HOH HOH . E 5 HOH X 117 417 123 HOH HOH . E 5 HOH X 118 418 128 HOH HOH . E 5 HOH X 119 419 69 HOH HOH . E 5 HOH X 120 420 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 U75 . . . C 3 6.097 29.276 5.748 1 18.81 ? C4 U75 202 X 1 HETATM 2 C C5 U75 . . . C 3 4.837 29.334 5.166 1 18.46 ? C5 U75 202 X 1 HETATM 3 C C6 U75 . . . C 3 4.522 28.403 4.179 1 20.32 ? C6 U75 202 X 1 HETATM 4 N N1 U75 . . . C 3 5.411 27.479 3.818 1 18.99 ? N1 U75 202 X 1 HETATM 5 N N3 U75 . . . C 3 6.956 28.328 5.358 1 18.46 ? N3 U75 202 X 1 HETATM 6 C CAI U75 . . . C 3 7.294 31.289 6.09 1 25.53 ? CAI U75 202 X 1 HETATM 7 C CAH U75 . . . C 3 6.487 30.163 6.742 1 19.63 ? CAH U75 202 X 1 HETATM 8 C C2 U75 . . . C 3 6.621 27.444 4.403 1 19.6 ? C2 U75 202 X 1 HETATM 9 N NAJ U75 . . . C 3 7.508 26.522 4.022 1 18.08 ? NAJ U75 202 X 1 HETATM 10 N NAG U75 . . . C 3 3.306 28.448 3.638 1 18.7 ? NAG U75 202 X 1 HETATM 11 C CAK U75 . . . C 3 3.879 30.336 5.586 1 21.49 ? CAK U75 202 X 1 HETATM 12 C CAL U75 . . . C 3 3.136 31.155 5.939 1 24.85 ? CAL U75 202 X 1 HETATM 13 C CAM U75 . . . C 3 2.215 32.208 6.415 1 24 ? CAM U75 202 X 1 HETATM 14 C CAN U75 . . . C 3 2.896 33.128 7.217 1 23.19 ? CAN U75 202 X 1 HETATM 15 C CAO U75 . . . C 3 4.132 33.628 6.837 1 21.03 ? CAO U75 202 X 1 HETATM 16 C CAS U75 . . . C 3 2.319 33.569 8.414 1 26.7 ? CAS U75 202 X 1 HETATM 17 C CAR U75 . . . C 3 2.96 34.495 9.234 1 28.63 ? CAR U75 202 X 1 HETATM 18 O OBB U75 . . . C 3 2.341 34.881 10.407 1 28.35 ? OBB U75 202 X 1 HETATM 19 C CBC U75 . . . C 3 3.152 35.607 11.334 1 26.41 ? CBC U75 202 X 1 HETATM 20 C CAQ U75 . . . C 3 4.213 34.984 8.85 1 24.32 ? CAQ U75 202 X 1 HETATM 21 C CAP U75 . . . C 3 4.792 34.563 7.647 1 23.14 ? CAP U75 202 X 1 HETATM 22 C CAT U75 . . . C 3 6.052 35.038 7.238 1 25.49 ? CAT U75 202 X 1 HETATM 23 C CAU U75 . . . C 3 7.023 35.389 8.168 1 22.89 ? CAU U75 202 X 1 HETATM 24 C CAV U75 . . . C 3 8.273 35.847 7.751 1 32.69 ? CAV U75 202 X 1 HETATM 25 C CAW U75 . . . C 3 8.57 35.95 6.389 1 34.2 ? CAW U75 202 X 1 HETATM 26 C CAZ U75 . . . C 3 9.832 36.405 5.97 1 40.54 ? CAZ U75 202 X 1 HETATM 27 O OBD U75 . . . C 3 10.559 37.082 6.744 1 33.36 ? OBD U75 202 X 1 HETATM 28 O OBA U75 . . . C 3 10.249 36.116 4.822 1 33.3 ? OBA U75 202 X 1 HETATM 29 C CAX U75 . . . C 3 7.6 35.589 5.453 1 29.04 ? CAX U75 202 X 1 HETATM 30 C CAY U75 . . . C 3 6.346 35.136 5.874 1 27.58 ? CAY U75 202 X 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 400 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #