data_5HF2
#
_model_server_result.job_id            fHSJntW68T3Q1Wo5DjPtaQ 
_model_server_result.datetime_utc      '2024-11-06 16:22:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hf2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5HF2 
#
_exptl.entry_id    5HF2 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5HF2 
_cell.length_a            79.022 
_cell.length_b            79.022 
_cell.length_c            108.247 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HF2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     5HF2 
_atom_sites.fract_transf_matrix[1][1]    0.012655 
_atom_sites.fract_transf_matrix[1][2]    0.007306 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014612 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009238 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 XNP X 1 201 1 XNP ANH . 
C 3 U75 X 1 202 1 U75 DRG . 
D 4 GOL X 1 203 221 GOL GOL . 
E 5 HOH X 1 301 72 HOH HOH . 
E 5 HOH X 2 302 78 HOH HOH . 
E 5 HOH X 3 303 49 HOH HOH . 
E 5 HOH X 4 304 8 HOH HOH . 
E 5 HOH X 5 305 51 HOH HOH . 
E 5 HOH X 6 306 43 HOH HOH . 
E 5 HOH X 7 307 66 HOH HOH . 
E 5 HOH X 8 308 62 HOH HOH . 
E 5 HOH X 9 309 98 HOH HOH . 
E 5 HOH X 10 310 18 HOH HOH . 
E 5 HOH X 11 311 71 HOH HOH . 
E 5 HOH X 12 312 79 HOH HOH . 
E 5 HOH X 13 313 96 HOH HOH . 
E 5 HOH X 14 314 42 HOH HOH . 
E 5 HOH X 15 315 99 HOH HOH . 
E 5 HOH X 16 316 24 HOH HOH . 
E 5 HOH X 17 317 85 HOH HOH . 
E 5 HOH X 18 318 88 HOH HOH . 
E 5 HOH X 19 319 4 HOH HOH . 
E 5 HOH X 20 320 28 HOH HOH . 
E 5 HOH X 21 321 41 HOH HOH . 
E 5 HOH X 22 322 32 HOH HOH . 
E 5 HOH X 23 323 111 HOH HOH . 
E 5 HOH X 24 324 34 HOH HOH . 
E 5 HOH X 25 325 106 HOH HOH . 
E 5 HOH X 26 326 105 HOH HOH . 
E 5 HOH X 27 327 113 HOH HOH . 
E 5 HOH X 28 328 48 HOH HOH . 
E 5 HOH X 29 329 17 HOH HOH . 
E 5 HOH X 30 330 60 HOH HOH . 
E 5 HOH X 31 331 7 HOH HOH . 
E 5 HOH X 32 332 44 HOH HOH . 
E 5 HOH X 33 333 80 HOH HOH . 
E 5 HOH X 34 334 83 HOH HOH . 
E 5 HOH X 35 335 6 HOH HOH . 
E 5 HOH X 36 336 29 HOH HOH . 
E 5 HOH X 37 337 46 HOH HOH . 
E 5 HOH X 38 338 12 HOH HOH . 
E 5 HOH X 39 339 116 HOH HOH . 
E 5 HOH X 40 340 27 HOH HOH . 
E 5 HOH X 41 341 55 HOH HOH . 
E 5 HOH X 42 342 15 HOH HOH . 
E 5 HOH X 43 343 58 HOH HOH . 
E 5 HOH X 44 344 47 HOH HOH . 
E 5 HOH X 45 345 37 HOH HOH . 
E 5 HOH X 46 346 40 HOH HOH . 
E 5 HOH X 47 347 59 HOH HOH . 
E 5 HOH X 48 348 50 HOH HOH . 
E 5 HOH X 49 349 109 HOH HOH . 
E 5 HOH X 50 350 19 HOH HOH . 
E 5 HOH X 51 351 90 HOH HOH . 
E 5 HOH X 52 352 119 HOH HOH . 
E 5 HOH X 53 353 115 HOH HOH . 
E 5 HOH X 54 354 82 HOH HOH . 
E 5 HOH X 55 355 84 HOH HOH . 
E 5 HOH X 56 356 70 HOH HOH . 
E 5 HOH X 57 357 100 HOH HOH . 
E 5 HOH X 58 358 77 HOH HOH . 
E 5 HOH X 59 359 11 HOH HOH . 
E 5 HOH X 60 360 16 HOH HOH . 
E 5 HOH X 61 361 81 HOH HOH . 
E 5 HOH X 62 362 10 HOH HOH . 
E 5 HOH X 63 363 125 HOH HOH . 
E 5 HOH X 64 364 65 HOH HOH . 
E 5 HOH X 65 365 35 HOH HOH . 
E 5 HOH X 66 366 107 HOH HOH . 
E 5 HOH X 67 367 3 HOH HOH . 
E 5 HOH X 68 368 13 HOH HOH . 
E 5 HOH X 69 369 64 HOH HOH . 
E 5 HOH X 70 370 20 HOH HOH . 
E 5 HOH X 71 371 33 HOH HOH . 
E 5 HOH X 72 372 39 HOH HOH . 
E 5 HOH X 73 373 103 HOH HOH . 
E 5 HOH X 74 374 5 HOH HOH . 
E 5 HOH X 75 375 36 HOH HOH . 
E 5 HOH X 76 376 38 HOH HOH . 
E 5 HOH X 77 377 117 HOH HOH . 
E 5 HOH X 78 378 1 HOH HOH . 
E 5 HOH X 79 379 2 HOH HOH . 
E 5 HOH X 80 380 25 HOH HOH . 
E 5 HOH X 81 381 126 HOH HOH . 
E 5 HOH X 82 382 23 HOH HOH . 
E 5 HOH X 83 383 67 HOH HOH . 
E 5 HOH X 84 384 104 HOH HOH . 
E 5 HOH X 85 385 22 HOH HOH . 
E 5 HOH X 86 386 76 HOH HOH . 
E 5 HOH X 87 387 86 HOH HOH . 
E 5 HOH X 88 388 9 HOH HOH . 
E 5 HOH X 89 389 68 HOH HOH . 
E 5 HOH X 90 390 63 HOH HOH . 
E 5 HOH X 91 391 56 HOH HOH . 
E 5 HOH X 92 392 122 HOH HOH . 
E 5 HOH X 93 393 73 HOH HOH . 
E 5 HOH X 94 394 95 HOH HOH . 
E 5 HOH X 95 395 121 HOH HOH . 
E 5 HOH X 96 396 93 HOH HOH . 
E 5 HOH X 97 397 21 HOH HOH . 
E 5 HOH X 98 398 130 HOH HOH . 
E 5 HOH X 99 399 54 HOH HOH . 
E 5 HOH X 100 400 110 HOH HOH . 
E 5 HOH X 101 401 14 HOH HOH . 
E 5 HOH X 102 402 120 HOH HOH . 
E 5 HOH X 103 403 74 HOH HOH . 
E 5 HOH X 104 404 87 HOH HOH . 
E 5 HOH X 105 405 61 HOH HOH . 
E 5 HOH X 106 406 89 HOH HOH . 
E 5 HOH X 107 407 75 HOH HOH . 
E 5 HOH X 108 408 26 HOH HOH . 
E 5 HOH X 109 409 97 HOH HOH . 
E 5 HOH X 110 410 91 HOH HOH . 
E 5 HOH X 111 411 101 HOH HOH . 
E 5 HOH X 112 412 132 HOH HOH . 
E 5 HOH X 113 413 31 HOH HOH . 
E 5 HOH X 114 414 45 HOH HOH . 
E 5 HOH X 115 415 30 HOH HOH . 
E 5 HOH X 116 416 52 HOH HOH . 
E 5 HOH X 117 417 123 HOH HOH . 
E 5 HOH X 118 418 128 HOH HOH . 
E 5 HOH X 119 419 69 HOH HOH . 
E 5 HOH X 120 420 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 2.305 13.055 8.417 1 44.95 ? C1 GOL 203 X 1 
HETATM 2 O O1 GOL . . . D 4 2.122 12.401 7.18 1 46.04 ? O1 GOL 203 X 1 
HETATM 3 C C2 GOL . . . D 4 0.988 13.704 8.834 1 38.73 ? C2 GOL 203 X 1 
HETATM 4 O O2 GOL . . . D 4 0.653 13.416 10.176 1 40.95 ? O2 GOL 203 X 1 
HETATM 5 C C3 GOL . . . D 4 -0.133 13.32 7.872 1 33.06 ? C3 GOL 203 X 1 
HETATM 6 O O3 GOL . . . D 4 -1.271 12.758 8.506 1 37.84 ? O3 GOL 203 X 1 
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_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#