data_5HFF # _model_server_result.job_id O_fnk3xIkH-3212oUz0IxQ _model_server_result.datetime_utc '2024-10-20 00:41:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hff # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 5HFF # _exptl.entry_id 5HFF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HFF _cell.length_a 89.575 _cell.length_b 89.575 _cell.length_c 89.575 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HFF _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5HFF _atom_sites.fract_transf_matrix[1][1] 0.011164 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 501 1 GOL GOL . D 3 GOL A 1 502 2 GOL GOL . E 4 HOH A 1 601 99 HOH HOH . E 4 HOH A 2 602 90 HOH HOH . E 4 HOH A 3 603 92 HOH HOH . E 4 HOH A 4 604 29 HOH HOH . E 4 HOH A 5 605 66 HOH HOH . E 4 HOH A 6 606 13 HOH HOH . E 4 HOH A 7 607 43 HOH HOH . E 4 HOH A 8 608 10 HOH HOH . E 4 HOH A 9 609 26 HOH HOH . E 4 HOH A 10 610 15 HOH HOH . E 4 HOH A 11 611 79 HOH HOH . E 4 HOH A 12 612 94 HOH HOH . E 4 HOH A 13 613 53 HOH HOH . E 4 HOH A 14 614 3 HOH HOH . E 4 HOH A 15 615 47 HOH HOH . E 4 HOH A 16 616 62 HOH HOH . E 4 HOH A 17 617 18 HOH HOH . E 4 HOH A 18 618 44 HOH HOH . E 4 HOH A 19 619 1 HOH HOH . E 4 HOH A 20 620 40 HOH HOH . E 4 HOH A 21 621 58 HOH HOH . E 4 HOH A 22 622 63 HOH HOH . E 4 HOH A 23 623 2 HOH HOH . E 4 HOH A 24 624 45 HOH HOH . E 4 HOH A 25 625 75 HOH HOH . E 4 HOH A 26 626 6 HOH HOH . E 4 HOH A 27 627 8 HOH HOH . E 4 HOH A 28 628 19 HOH HOH . E 4 HOH A 29 629 46 HOH HOH . E 4 HOH A 30 630 50 HOH HOH . E 4 HOH A 31 631 41 HOH HOH . E 4 HOH A 32 632 78 HOH HOH . E 4 HOH A 33 633 36 HOH HOH . E 4 HOH A 34 634 33 HOH HOH . E 4 HOH A 35 635 16 HOH HOH . E 4 HOH A 36 636 55 HOH HOH . E 4 HOH A 37 637 25 HOH HOH . E 4 HOH A 38 638 21 HOH HOH . E 4 HOH A 39 639 52 HOH HOH . E 4 HOH A 40 640 12 HOH HOH . E 4 HOH A 41 641 28 HOH HOH . E 4 HOH A 42 642 42 HOH HOH . E 4 HOH A 43 643 57 HOH HOH . E 4 HOH A 44 644 38 HOH HOH . E 4 HOH A 45 645 83 HOH HOH . E 4 HOH A 46 646 67 HOH HOH . E 4 HOH A 47 647 70 HOH HOH . E 4 HOH A 48 648 11 HOH HOH . E 4 HOH A 49 649 34 HOH HOH . E 4 HOH A 50 650 60 HOH HOH . E 4 HOH A 51 651 17 HOH HOH . E 4 HOH A 52 652 32 HOH HOH . E 4 HOH A 53 653 23 HOH HOH . E 4 HOH A 54 654 56 HOH HOH . E 4 HOH A 55 655 22 HOH HOH . E 4 HOH A 56 656 5 HOH HOH . E 4 HOH A 57 657 85 HOH HOH . E 4 HOH A 58 658 48 HOH HOH . E 4 HOH A 59 659 14 HOH HOH . E 4 HOH A 60 660 54 HOH HOH . E 4 HOH A 61 661 20 HOH HOH . E 4 HOH A 62 662 30 HOH HOH . E 4 HOH A 63 663 84 HOH HOH . E 4 HOH A 64 664 68 HOH HOH . E 4 HOH A 65 665 59 HOH HOH . E 4 HOH A 66 666 88 HOH HOH . E 4 HOH A 67 667 81 HOH HOH . E 4 HOH A 68 668 86 HOH HOH . E 4 HOH A 69 669 9 HOH HOH . E 4 HOH A 70 670 64 HOH HOH . E 4 HOH A 71 671 74 HOH HOH . E 4 HOH A 72 672 91 HOH HOH . E 4 HOH A 73 673 76 HOH HOH . E 4 HOH A 74 674 98 HOH HOH . E 4 HOH A 75 675 93 HOH HOH . E 4 HOH A 76 676 35 HOH HOH . E 4 HOH A 77 677 89 HOH HOH . E 4 HOH A 78 678 39 HOH HOH . E 4 HOH A 79 679 77 HOH HOH . E 4 HOH A 80 680 27 HOH HOH . E 4 HOH A 81 681 73 HOH HOH . E 4 HOH A 82 682 95 HOH HOH . E 4 HOH A 83 683 69 HOH HOH . E 4 HOH A 84 684 51 HOH HOH . E 4 HOH A 85 685 71 HOH HOH . E 4 HOH A 86 686 31 HOH HOH . E 4 HOH A 87 687 61 HOH HOH . E 4 HOH A 88 688 72 HOH HOH . E 4 HOH A 89 689 97 HOH HOH . E 4 HOH A 90 690 87 HOH HOH . E 4 HOH A 91 691 65 HOH HOH . E 4 HOH A 92 692 80 HOH HOH . F 4 HOH B 1 101 82 HOH HOH . F 4 HOH B 2 102 4 HOH HOH . F 4 HOH B 3 103 7 HOH HOH . F 4 HOH B 4 104 24 HOH HOH . F 4 HOH B 5 105 37 HOH HOH . F 4 HOH B 6 106 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 51.055 47.032 43.56 1 61.92 ? C1 GOL 502 A 1 HETATM 2 O O1 GOL . . . D 3 49.886 47.754 43.24 1 61.02 ? O1 GOL 502 A 1 HETATM 3 C C2 GOL . . . D 3 51.362 47.119 45.048 1 67.88 ? C2 GOL 502 A 1 HETATM 4 O O2 GOL . . . D 3 50.156 47.118 45.782 1 76.58 ? O2 GOL 502 A 1 HETATM 5 C C3 GOL . . . D 3 52.197 48.366 45.341 1 68.97 ? C3 GOL 502 A 1 HETATM 6 O O3 GOL . . . D 3 52.581 48.37 46.702 1 76.48 ? O3 GOL 502 A 1 HETATM 7 H H11 GOL . . . D 3 50.925 45.987 43.276 1 74.3 ? H11 GOL 502 A 1 HETATM 8 H H12 GOL . . . D 3 51.895 47.431 42.991 1 74.3 ? H12 GOL 502 A 1 HETATM 9 H HO1 GOL . . . D 3 49.746 47.737 42.27 1 73.22 ? HO1 GOL 502 A 1 HETATM 10 H H2 GOL . . . D 3 51.951 46.245 45.324 1 81.46 ? H2 GOL 502 A 1 HETATM 11 H HO2 GOL . . . D 3 50.358 47.15 46.741 1 91.89 ? HO2 GOL 502 A 1 HETATM 12 H H31 GOL . . . D 3 51.614 49.26 45.12 1 82.77 ? H31 GOL 502 A 1 HETATM 13 H H32 GOL . . . D 3 53.084 48.372 44.707 1 82.77 ? H32 GOL 502 A 1 HETATM 14 H HO3 GOL . . . D 3 53.194 49.116 46.866 1 91.77 ? HO3 GOL 502 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #