data_5HFJ # _model_server_result.job_id wEsGBH2l0UQDnJg7qFmnBA _model_server_result.datetime_utc '2025-03-06 08:29:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hfj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":301}' # _entry.id 5HFJ # _exptl.entry_id 5HFJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HFJ _cell.length_a 135.603 _cell.length_b 135.603 _cell.length_c 265.146 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J 1 1 C,E,K,M 2 1 D,H,L,P 3 1 F,G,N,O 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 275 n n N HN1 SAM sing 276 n n N HN2 SAM sing 277 n n CA C SAM sing 278 n n CA CB SAM sing 279 n n CA HA SAM sing 280 n n C O SAM doub 281 n n C OXT SAM sing 282 n n CB CG SAM sing 283 n n CB HB1 SAM sing 284 n n CB HB2 SAM sing 285 n n CG SD SAM sing 286 n n CG HG1 SAM sing 287 n n CG HG2 SAM sing 288 n n SD CE SAM sing 289 n n SD C5' SAM sing 290 n n CE HE1 SAM sing 291 n n CE HE2 SAM sing 292 n n CE HE3 SAM sing 293 n n C5' C4' SAM sing 294 n n C5' "H5'1" SAM sing 295 n n C5' "H5'2" SAM sing 296 n n C4' O4' SAM sing 297 n n C4' C3' SAM sing 298 n n C4' H4' SAM sing 299 n n O4' C1' SAM sing 300 n n C3' O3' SAM sing 301 n n C3' C2' SAM sing 302 n n C3' H3' SAM sing 303 n n O3' HO3' SAM sing 304 n n C2' O2' SAM sing 305 n n C2' C1' SAM sing 306 n n C2' H2' SAM sing 307 n n O2' HO2' SAM sing 308 n n C1' N9 SAM sing 309 n n C1' H1' SAM sing 310 n n N9 C8 SAM sing 311 n y N9 C4 SAM sing 312 n y C8 N7 SAM doub 313 n y C8 H8 SAM sing 314 n n N7 C5 SAM sing 315 n y C5 C6 SAM sing 316 n y C5 C4 SAM doub 317 n y C6 N6 SAM sing 318 n n C6 N1 SAM doub 319 n y N6 HN61 SAM sing 320 n n N6 HN62 SAM sing 321 n n N1 C2 SAM sing 322 n y C2 N3 SAM doub 323 n y C2 H2 SAM sing 324 n n N3 C4 SAM sing 325 n y # _atom_sites.entry_id 5HFJ _atom_sites.fract_transf_matrix[1][1] 0.007374 _atom_sites.fract_transf_matrix[1][2] 0.004258 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 SAM A 1 301 3 SAM SAM . J 2 SAM B 1 301 1 SAM SAM . K 2 SAM C 1 301 4 SAM SAM . L 2 SAM D 1 301 8 SAM SAM . M 2 SAM E 1 301 6 SAM SAM . N 2 SAM F 1 301 5 SAM SAM . O 2 SAM G 1 301 2 SAM SAM . P 2 SAM H 1 301 7 SAM SAM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . L 2 -74.179 -11.774 -8.726 1 78.84 ? N SAM 301 D 1 HETATM 2 C CA SAM . . . L 2 -72.776 -12.023 -9.044 1 81.65 ? CA SAM 301 D 1 HETATM 3 C C SAM . . . L 2 -71.827 -11.43 -8.002 1 87.04 ? C SAM 301 D 1 HETATM 4 O O SAM . . . L 2 -70.713 -11.015 -8.321 1 84.02 ? O SAM 301 D 1 HETATM 5 O OXT SAM . . . L 2 -72.15 -11.356 -6.816 1 94.55 ? OXT SAM 301 D 1 HETATM 6 C CB SAM . . . L 2 -72.428 -11.533 -10.449 1 77.78 ? CB SAM 301 D 1 HETATM 7 C CG SAM . . . L 2 -73.607 -11.365 -11.403 1 73.82 ? CG SAM 301 D 1 HETATM 8 S SD SAM . . . L 2 -73.169 -10.406 -12.877 1 90.4 ? SD SAM 301 D 1 HETATM 9 C CE SAM . . . L 2 -74.706 -9.482 -13.124 1 122.41 ? CE SAM 301 D 1 HETATM 10 C C5' SAM . . . L 2 -73.29 -11.625 -14.213 1 83.21 ? C5' SAM 301 D 1 HETATM 11 C C4' SAM . . . L 2 -71.951 -12.236 -14.62 1 86.11 ? C4' SAM 301 D 1 HETATM 12 O O4' SAM . . . L 2 -72.139 -13.186 -15.654 1 91.38 ? O4' SAM 301 D 1 HETATM 13 C C3' SAM . . . L 2 -70.958 -11.212 -15.155 1 81.75 ? C3' SAM 301 D 1 HETATM 14 O O3' SAM . . . L 2 -69.886 -11.06 -14.253 1 75.53 ? O3' SAM 301 D 1 HETATM 15 C C2' SAM . . . L 2 -70.444 -11.792 -16.46 1 82.73 ? C2' SAM 301 D 1 HETATM 16 O O2' SAM . . . L 2 -69.037 -11.817 -16.479 1 77.85 ? O2' SAM 301 D 1 HETATM 17 C C1' SAM . . . L 2 -70.998 -13.206 -16.489 1 91.4 ? C1' SAM 301 D 1 HETATM 18 N N9 SAM . . . L 2 -71.306 -13.631 -17.869 1 98.29 ? N9 SAM 301 D 1 HETATM 19 C C8 SAM . . . L 2 -71.68 -12.822 -18.911 1 100.05 ? C8 SAM 301 D 1 HETATM 20 N N7 SAM . . . L 2 -71.861 -13.591 -20.01 1 99.58 ? N7 SAM 301 D 1 HETATM 21 C C5 SAM . . . L 2 -71.602 -14.877 -19.687 1 98.45 ? C5 SAM 301 D 1 HETATM 22 C C6 SAM . . . L 2 -71.634 -16.052 -20.428 1 95.67 ? C6 SAM 301 D 1 HETATM 23 N N6 SAM . . . L 2 -71.972 -16.022 -21.714 1 95.04 ? N6 SAM 301 D 1 HETATM 24 N N1 SAM . . . L 2 -71.315 -17.25 -19.821 1 95.45 ? N1 SAM 301 D 1 HETATM 25 C C2 SAM . . . L 2 -70.968 -17.272 -18.485 1 97.02 ? C2 SAM 301 D 1 HETATM 26 N N3 SAM . . . L 2 -70.936 -16.099 -17.757 1 98.79 ? N3 SAM 301 D 1 HETATM 27 C C4 SAM . . . L 2 -71.249 -14.918 -18.346 1 99.62 ? C4 SAM 301 D 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 27 #