data_5HFJ
#
_model_server_result.job_id            gOCy9wZhMH7bt0FlR7cMEg 
_model_server_result.datetime_utc      '2025-03-06 08:36:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hfj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    5HFJ 
#
_exptl.entry_id    5HFJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5HFJ 
_cell.length_a            135.603 
_cell.length_b            135.603 
_cell.length_c            265.146 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HFJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J 1 1 
C,E,K,M 2 1 
D,H,L,P 3 1 
F,G,N,O 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 275 n n 
N HN1 SAM sing 276 n n 
N HN2 SAM sing 277 n n 
CA C SAM sing 278 n n 
CA CB SAM sing 279 n n 
CA HA SAM sing 280 n n 
C O SAM doub 281 n n 
C OXT SAM sing 282 n n 
CB CG SAM sing 283 n n 
CB HB1 SAM sing 284 n n 
CB HB2 SAM sing 285 n n 
CG SD SAM sing 286 n n 
CG HG1 SAM sing 287 n n 
CG HG2 SAM sing 288 n n 
SD CE SAM sing 289 n n 
SD C5' SAM sing 290 n n 
CE HE1 SAM sing 291 n n 
CE HE2 SAM sing 292 n n 
CE HE3 SAM sing 293 n n 
C5' C4' SAM sing 294 n n 
C5' "H5'1" SAM sing 295 n n 
C5' "H5'2" SAM sing 296 n n 
C4' O4' SAM sing 297 n n 
C4' C3' SAM sing 298 n n 
C4' H4' SAM sing 299 n n 
O4' C1' SAM sing 300 n n 
C3' O3' SAM sing 301 n n 
C3' C2' SAM sing 302 n n 
C3' H3' SAM sing 303 n n 
O3' HO3' SAM sing 304 n n 
C2' O2' SAM sing 305 n n 
C2' C1' SAM sing 306 n n 
C2' H2' SAM sing 307 n n 
O2' HO2' SAM sing 308 n n 
C1' N9 SAM sing 309 n n 
C1' H1' SAM sing 310 n n 
N9 C8 SAM sing 311 n y 
N9 C4 SAM sing 312 n y 
C8 N7 SAM doub 313 n y 
C8 H8 SAM sing 314 n n 
N7 C5 SAM sing 315 n y 
C5 C6 SAM sing 316 n y 
C5 C4 SAM doub 317 n y 
C6 N6 SAM sing 318 n n 
C6 N1 SAM doub 319 n y 
N6 HN61 SAM sing 320 n n 
N6 HN62 SAM sing 321 n n 
N1 C2 SAM sing 322 n y 
C2 N3 SAM doub 323 n y 
C2 H2 SAM sing 324 n n 
N3 C4 SAM sing 325 n y 
#
_atom_sites.entry_id                     5HFJ 
_atom_sites.fract_transf_matrix[1][1]    0.007374 
_atom_sites.fract_transf_matrix[1][2]    0.004258 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008515 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003772 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 SAM A 1 301 3 SAM SAM . 
J 2 SAM B 1 301 1 SAM SAM . 
K 2 SAM C 1 301 4 SAM SAM . 
L 2 SAM D 1 301 8 SAM SAM . 
M 2 SAM E 1 301 6 SAM SAM . 
N 2 SAM F 1 301 5 SAM SAM . 
O 2 SAM G 1 301 2 SAM SAM . 
P 2 SAM H 1 301 7 SAM SAM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . M 2 -63.01 -17.667 22.294 1 70.82 ? N SAM 301 E 1 
HETATM 2 C CA SAM . . . M 2 -61.741 -17.621 21.582 1 70.16 ? CA SAM 301 E 1 
HETATM 3 C C SAM . . . M 2 -61.853 -18.301 20.222 1 65.99 ? C SAM 301 E 1 
HETATM 4 O O SAM . . . M 2 -60.902 -18.915 19.738 1 62.85 ? O SAM 301 E 1 
HETATM 5 O OXT SAM . . . M 2 -62.901 -18.25 19.577 1 63.3 ? OXT SAM 301 E 1 
HETATM 6 C CB SAM . . . M 2 -60.63 -18.231 22.43 1 73.25 ? CB SAM 301 E 1 
HETATM 7 C CG SAM . . . M 2 -61.113 -18.923 23.7 1 75.97 ? CG SAM 301 E 1 
HETATM 8 S SD SAM . . . M 2 -61.189 -17.809 25.127 1 72.12 ? SD SAM 301 E 1 
HETATM 9 C CE SAM . . . M 2 -59.634 -16.898 24.954 1 74.52 ? CE SAM 301 E 1 
HETATM 10 C C5' SAM . . . M 2 -60.789 -18.975 26.454 1 73.7 ? C5' SAM 301 E 1 
HETATM 11 C C4' SAM . . . M 2 -62.06 -19.566 27.058 1 74.6 ? C4' SAM 301 E 1 
HETATM 12 O O4' SAM . . . M 2 -61.848 -20.873 27.565 1 76.51 ? O4' SAM 301 E 1 
HETATM 13 C C3' SAM . . . M 2 -62.587 -18.721 28.209 1 75.52 ? C3' SAM 301 E 1 
HETATM 14 O O3' SAM . . . M 2 -63.924 -18.371 27.942 1 74.45 ? O3' SAM 301 E 1 
HETATM 15 C C2' SAM . . . M 2 -62.545 -19.632 29.417 1 74.05 ? C2' SAM 301 E 1 
HETATM 16 O O2' SAM . . . M 2 -63.679 -19.457 30.229 1 72.2 ? O2' SAM 301 E 1 
HETATM 17 C C1' SAM . . . M 2 -62.571 -21.006 28.776 1 78.35 ? C1' SAM 301 E 1 
HETATM 18 N N9 SAM . . . M 2 -62.115 -22.148 29.607 1 89.13 ? N9 SAM 301 E 1 
HETATM 19 C C8 SAM . . . M 2 -61.95 -23.412 29.11 1 93.1 ? C8 SAM 301 E 1 
HETATM 20 N N7 SAM . . . M 2 -61.546 -24.233 30.103 1 93.93 ? N7 SAM 301 E 1 
HETATM 21 C C5 SAM . . . M 2 -61.454 -23.515 31.24 1 95.63 ? C5 SAM 301 E 1 
HETATM 22 C C6 SAM . . . M 2 -61.099 -23.88 32.533 1 97.84 ? C6 SAM 301 E 1 
HETATM 23 N N6 SAM . . . M 2 -60.753 -25.135 32.801 1 97.9 ? N6 SAM 301 E 1 
HETATM 24 N N1 SAM . . . M 2 -61.102 -22.933 33.535 1 100.03 ? N1 SAM 301 E 1 
HETATM 25 C C2 SAM . . . M 2 -61.463 -21.634 33.242 1 101.47 ? C2 SAM 301 E 1 
HETATM 26 N N3 SAM . . . M 2 -61.82 -21.284 31.955 1 100.01 ? N3 SAM 301 E 1 
HETATM 27 C C4 SAM . . . M 2 -61.826 -22.204 30.957 1 95.21 ? C4 SAM 301 E 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           27 
#