data_5HG0
#
_model_server_result.job_id            1x3KkeDfifp8Y99e59BVfw 
_model_server_result.datetime_utc      '2024-11-10 01:32:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hg0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5HG0 
#
_exptl.entry_id    5HG0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HG0 
_cell.length_a            47.366 
_cell.length_b            47.366 
_cell.length_c            257.683 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HG0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C MSE 4 A MSE 1 1_555 A N ILE 5 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 A C THR 31 A THR 28 1_555 A N MSE 32 A MSE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C MSE 32 A MSE 29 1_555 A N GLY 33 A GLY 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 A C GLY 130 A GLY 127 1_555 A N MSE 131 A MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 A C MSE 131 A MSE 128 1_555 A N LEU 132 A LEU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale7 A C VAL 157 A VAL 154 1_555 A N MSE 158 A MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 A C MSE 158 A MSE 155 1_555 A N LEU 159 A LEU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale9 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale10 B C MSE 4 B MSE 1 1_555 B N ILE 5 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale11 B C THR 31 B THR 28 1_555 B N MSE 32 B MSE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale12 B C MSE 32 B MSE 29 1_555 B N GLY 33 B GLY 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale13 B C GLY 130 B GLY 127 1_555 B N MSE 131 B MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale14 B C MSE 131 B MSE 128 1_555 B N LEU 132 B LEU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale15 B C VAL 157 B VAL 154 1_555 B N MSE 158 B MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale16 B C MSE 158 B MSE 155 1_555 B N LEU 159 B LEU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 277 n n 
N HN1 SAM sing 278 n n 
N HN2 SAM sing 279 n n 
CA C SAM sing 280 n n 
CA CB SAM sing 281 n n 
CA HA SAM sing 282 n n 
C O SAM doub 283 n n 
C OXT SAM sing 284 n n 
CB CG SAM sing 285 n n 
CB HB1 SAM sing 286 n n 
CB HB2 SAM sing 287 n n 
CG SD SAM sing 288 n n 
CG HG1 SAM sing 289 n n 
CG HG2 SAM sing 290 n n 
SD CE SAM sing 291 n n 
SD C5' SAM sing 292 n n 
CE HE1 SAM sing 293 n n 
CE HE2 SAM sing 294 n n 
CE HE3 SAM sing 295 n n 
C5' C4' SAM sing 296 n n 
C5' "H5'1" SAM sing 297 n n 
C5' "H5'2" SAM sing 298 n n 
C4' O4' SAM sing 299 n n 
C4' C3' SAM sing 300 n n 
C4' H4' SAM sing 301 n n 
O4' C1' SAM sing 302 n n 
C3' O3' SAM sing 303 n n 
C3' C2' SAM sing 304 n n 
C3' H3' SAM sing 305 n n 
O3' HO3' SAM sing 306 n n 
C2' O2' SAM sing 307 n n 
C2' C1' SAM sing 308 n n 
C2' H2' SAM sing 309 n n 
O2' HO2' SAM sing 310 n n 
C1' N9 SAM sing 311 n n 
C1' H1' SAM sing 312 n n 
N9 C8 SAM sing 313 n y 
N9 C4 SAM sing 314 n y 
C8 N7 SAM doub 315 n y 
C8 H8 SAM sing 316 n n 
N7 C5 SAM sing 317 n y 
C5 C6 SAM sing 318 n y 
C5 C4 SAM doub 319 n y 
C6 N6 SAM sing 320 n n 
C6 N1 SAM doub 321 n y 
N6 HN61 SAM sing 322 n n 
N6 HN62 SAM sing 323 n n 
N1 C2 SAM sing 324 n y 
C2 N3 SAM doub 325 n y 
C2 H2 SAM sing 326 n n 
N3 C4 SAM sing 327 n y 
#
_atom_sites.entry_id                     5HG0 
_atom_sites.fract_transf_matrix[1][1]    0.021112 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021112 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003881 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAM A 1 301 301 SAM SAM . 
D 2 SAM B 1 301 301 SAM SAM . 
E 3 HOH A 1 401 55 HOH HOH . 
E 3 HOH A 2 402 36 HOH HOH . 
E 3 HOH A 3 403 21 HOH HOH . 
E 3 HOH A 4 404 56 HOH HOH . 
E 3 HOH A 5 405 99 HOH HOH . 
E 3 HOH A 6 406 4 HOH HOH . 
E 3 HOH A 7 407 2 HOH HOH . 
E 3 HOH A 8 408 101 HOH HOH . 
E 3 HOH A 9 409 47 HOH HOH . 
E 3 HOH A 10 410 49 HOH HOH . 
E 3 HOH A 11 411 22 HOH HOH . 
E 3 HOH A 12 412 11 HOH HOH . 
E 3 HOH A 13 413 97 HOH HOH . 
E 3 HOH A 14 414 28 HOH HOH . 
E 3 HOH A 15 415 25 HOH HOH . 
E 3 HOH A 16 416 89 HOH HOH . 
E 3 HOH A 17 417 5 HOH HOH . 
E 3 HOH A 18 418 8 HOH HOH . 
E 3 HOH A 19 419 54 HOH HOH . 
E 3 HOH A 20 420 27 HOH HOH . 
E 3 HOH A 21 421 109 HOH HOH . 
E 3 HOH A 22 422 37 HOH HOH . 
E 3 HOH A 23 423 20 HOH HOH . 
E 3 HOH A 24 424 18 HOH HOH . 
E 3 HOH A 25 425 98 HOH HOH . 
E 3 HOH A 26 426 46 HOH HOH . 
E 3 HOH A 27 427 7 HOH HOH . 
E 3 HOH A 28 428 9 HOH HOH . 
E 3 HOH A 29 429 41 HOH HOH . 
E 3 HOH A 30 430 12 HOH HOH . 
E 3 HOH A 31 431 53 HOH HOH . 
E 3 HOH A 32 432 100 HOH HOH . 
E 3 HOH A 33 433 23 HOH HOH . 
E 3 HOH A 34 434 19 HOH HOH . 
E 3 HOH A 35 435 40 HOH HOH . 
E 3 HOH A 36 436 13 HOH HOH . 
E 3 HOH A 37 437 110 HOH HOH . 
E 3 HOH A 38 438 6 HOH HOH . 
E 3 HOH A 39 439 33 HOH HOH . 
E 3 HOH A 40 440 44 HOH HOH . 
E 3 HOH A 41 441 31 HOH HOH . 
E 3 HOH A 42 442 102 HOH HOH . 
E 3 HOH A 43 443 24 HOH HOH . 
E 3 HOH A 44 444 15 HOH HOH . 
E 3 HOH A 45 445 91 HOH HOH . 
E 3 HOH A 46 446 30 HOH HOH . 
E 3 HOH A 47 447 26 HOH HOH . 
E 3 HOH A 48 448 3 HOH HOH . 
E 3 HOH A 49 449 105 HOH HOH . 
E 3 HOH A 50 450 17 HOH HOH . 
E 3 HOH A 51 451 10 HOH HOH . 
E 3 HOH A 52 452 48 HOH HOH . 
E 3 HOH A 53 453 93 HOH HOH . 
E 3 HOH A 54 454 1 HOH HOH . 
E 3 HOH A 55 455 82 HOH HOH . 
E 3 HOH A 56 456 16 HOH HOH . 
E 3 HOH A 57 457 14 HOH HOH . 
E 3 HOH A 58 458 90 HOH HOH . 
E 3 HOH A 59 459 29 HOH HOH . 
E 3 HOH A 60 460 45 HOH HOH . 
E 3 HOH A 61 461 42 HOH HOH . 
E 3 HOH A 62 462 51 HOH HOH . 
E 3 HOH A 63 463 92 HOH HOH . 
E 3 HOH A 64 464 50 HOH HOH . 
F 3 HOH B 1 401 34 HOH HOH . 
F 3 HOH B 2 402 60 HOH HOH . 
F 3 HOH B 3 403 108 HOH HOH . 
F 3 HOH B 4 404 72 HOH HOH . 
F 3 HOH B 5 405 96 HOH HOH . 
F 3 HOH B 6 406 58 HOH HOH . 
F 3 HOH B 7 407 75 HOH HOH . 
F 3 HOH B 8 408 86 HOH HOH . 
F 3 HOH B 9 409 76 HOH HOH . 
F 3 HOH B 10 410 88 HOH HOH . 
F 3 HOH B 11 411 65 HOH HOH . 
F 3 HOH B 12 412 81 HOH HOH . 
F 3 HOH B 13 413 61 HOH HOH . 
F 3 HOH B 14 414 94 HOH HOH . 
F 3 HOH B 15 415 59 HOH HOH . 
F 3 HOH B 16 416 106 HOH HOH . 
F 3 HOH B 17 417 62 HOH HOH . 
F 3 HOH B 18 418 78 HOH HOH . 
F 3 HOH B 19 419 69 HOH HOH . 
F 3 HOH B 20 420 38 HOH HOH . 
F 3 HOH B 21 421 66 HOH HOH . 
F 3 HOH B 22 422 83 HOH HOH . 
F 3 HOH B 23 423 79 HOH HOH . 
F 3 HOH B 24 424 107 HOH HOH . 
F 3 HOH B 25 425 64 HOH HOH . 
F 3 HOH B 26 426 63 HOH HOH . 
F 3 HOH B 27 427 32 HOH HOH . 
F 3 HOH B 28 428 57 HOH HOH . 
F 3 HOH B 29 429 70 HOH HOH . 
F 3 HOH B 30 430 39 HOH HOH . 
F 3 HOH B 31 431 80 HOH HOH . 
F 3 HOH B 32 432 77 HOH HOH . 
F 3 HOH B 33 433 67 HOH HOH . 
F 3 HOH B 34 434 52 HOH HOH . 
F 3 HOH B 35 435 68 HOH HOH . 
F 3 HOH B 36 436 43 HOH HOH . 
F 3 HOH B 37 437 71 HOH HOH . 
F 3 HOH B 38 438 103 HOH HOH . 
F 3 HOH B 39 439 35 HOH HOH . 
F 3 HOH B 40 440 87 HOH HOH . 
F 3 HOH B 41 441 85 HOH HOH . 
F 3 HOH B 42 442 73 HOH HOH . 
F 3 HOH B 43 443 95 HOH HOH . 
F 3 HOH B 44 444 104 HOH HOH . 
F 3 HOH B 45 445 84 HOH HOH . 
F 3 HOH B 46 446 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . C 2 14.401 -2.642 92.925 1 65.15 ? N SAM 301 A 1 
HETATM 2 C CA SAM . . . C 2 13.366 -3.648 93.15 1 69.42 ? CA SAM 301 A 1 
HETATM 3 C C SAM . . . C 2 13.722 -4.566 94.317 1 63.87 ? C SAM 301 A 1 
HETATM 4 O O SAM . . . C 2 14.479 -5.527 94.175 1 66.2 ? O SAM 301 A 1 
HETATM 5 O OXT SAM . . . C 2 13.246 -4.359 95.434 1 42.98 ? OXT SAM 301 A 1 
HETATM 6 C CB SAM . . . C 2 13.076 -4.446 91.878 1 64.26 ? CB SAM 301 A 1 
HETATM 7 C CG SAM . . . C 2 12.24 -3.671 90.865 1 54.53 ? CG SAM 301 A 1 
HETATM 8 S SD SAM . . . C 2 11.928 -4.508 89.284 1 30.77 ? SD SAM 301 A 1 
HETATM 9 C CE SAM . . . C 2 10.177 -4.926 89.509 1 35.59 ? CE SAM 301 A 1 
HETATM 10 C C5' SAM . . . C 2 12.7 -6.142 89.446 1 42.89 ? C5' SAM 301 A 1 
HETATM 11 C C4' SAM . . . C 2 13.781 -6.484 88.413 1 55.38 ? C4' SAM 301 A 1 
HETATM 12 O O4' SAM . . . C 2 13.312 -6.445 87.071 1 61.65 ? O4' SAM 301 A 1 
HETATM 13 C C3' SAM . . . C 2 14.987 -5.559 88.489 1 57.42 ? C3' SAM 301 A 1 
HETATM 14 O O3' SAM . . . C 2 16.127 -6.325 88.79 1 43.55 ? O3' SAM 301 A 1 
HETATM 15 C C2' SAM . . . C 2 15.136 -4.989 87.096 1 54.39 ? C2' SAM 301 A 1 
HETATM 16 O O2' SAM . . . C 2 16.489 -4.955 86.714 1 49.02 ? O2' SAM 301 A 1 
HETATM 17 C C1' SAM . . . C 2 14.35 -5.961 86.237 1 51.29 ? C1' SAM 301 A 1 
HETATM 18 N N9 SAM . . . C 2 13.853 -5.315 85.007 1 40.7 ? N9 SAM 301 A 1 
HETATM 19 C C8 SAM . . . C 2 12.94 -4.295 84.933 1 45.25 ? C8 SAM 301 A 1 
HETATM 20 N N7 SAM . . . C 2 12.75 -3.978 83.632 1 49.97 ? N7 SAM 301 A 1 
HETATM 21 C C5 SAM . . . C 2 13.533 -4.777 82.875 1 41.73 ? C5 SAM 301 A 1 
HETATM 22 C C6 SAM . . . C 2 13.721 -4.865 81.501 1 33.29 ? C6 SAM 301 A 1 
HETATM 23 N N6 SAM . . . C 2 13.049 -4.055 80.685 1 36.8 ? N6 SAM 301 A 1 
HETATM 24 N N1 SAM . . . C 2 14.603 -5.795 80.99 1 31.19 ? N1 SAM 301 A 1 
HETATM 25 C C2 SAM . . . C 2 15.293 -6.628 81.848 1 38.67 ? C2 SAM 301 A 1 
HETATM 26 N N3 SAM . . . C 2 15.105 -6.536 83.214 1 42.49 ? N3 SAM 301 A 1 
HETATM 27 C C4 SAM . . . C 2 14.236 -5.624 83.723 1 38.26 ? C4 SAM 301 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#