data_5HGI # _model_server_result.job_id vT1FzIVfTcAHVHwVB5QN0w _model_server_result.datetime_utc '2024-11-27 03:06:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1008}' # _entry.id 5HGI # _exptl.entry_id 5HGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HGI _cell.length_a 68.039 _cell.length_b 169.196 _cell.length_c 104.138 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -52.069 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 74 A ASP 620 1_555 B CS CS . A CS 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc2 A O HIS 76 A HIS 622 1_555 B CS CS . A CS 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.069 ? metalc ? metalc3 A O VAL 79 A VAL 625 1_555 B CS CS . A CS 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc4 A O SER 223 A SER 769 1_555 C CS CS . A CS 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? metalc ? metalc5 C CS CS . A CS 1001 1_555 H O3 GOL . A GOL 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? metalc ? metalc6 C CS CS . A CS 1001 1_555 H O2 GOL . A GOL 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.105 ? metalc ? metalc7 C CS CS . A CS 1001 1_555 H O3 GOL . A GOL 1006 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 3.332 ? metalc ? metalc8 C CS CS . A CS 1001 1_555 H O2 GOL . A GOL 1006 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 3.285 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 5HGI _atom_sites.fract_transf_matrix[1][1] 0.014697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CS A 1 1000 1000 CS CS . C 2 CS A 1 1001 1001 CS CS . D 2 CS A 1 1002 1002 CS CS . E 2 CS A 1 1003 1003 CS CS . F 2 CS A 1 1004 1004 CS CS . G 3 NA A 1 1005 1005 NA NA . H 4 GOL A 1 1006 1006 GOL GOL . I 5 DTT A 1 1007 1007 DTT DTT . J 6 BME A 1 1008 1008 BME BME . K 6 BME A 1 1009 1009 BME BME . L 6 BME A 1 1010 1010 BME BME . M 6 BME A 1 1011 1011 BME BME . N 7 CL A 1 1012 1012 CL CL . O 7 CL A 1 1013 1013 CL CL . P 8 HOH A 1 1101 1022 HOH HOH . P 8 HOH A 2 1102 1014 HOH HOH . P 8 HOH A 3 1103 1016 HOH HOH . P 8 HOH A 4 1104 1021 HOH HOH . P 8 HOH A 5 1105 1015 HOH HOH . P 8 HOH A 6 1106 1017 HOH HOH . P 8 HOH A 7 1107 1020 HOH HOH . P 8 HOH A 8 1108 1018 HOH HOH . P 8 HOH A 9 1109 1023 HOH HOH . P 8 HOH A 10 1110 1019 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . J 6 -9.141 13.228 -0.941 1 107.6 ? C1 BME 1008 A 1 HETATM 2 C C2 BME . . . J 6 -10.524 13.707 -1.351 1 112.59 ? C2 BME 1008 A 1 HETATM 3 O O1 BME . . . J 6 -9.103 11.801 -0.985 1 105.22 ? O1 BME 1008 A 1 HETATM 4 S S2 BME . . . J 6 -11.13 12.678 -2.702 1 113.78 ? S2 BME 1008 A 1 HETATM 5 H H11 BME . . . J 6 -8.912 13.575 0.068 1 129.11 ? H11 BME 1008 A 1 HETATM 6 H H12 BME . . . J 6 -8.392 13.638 -1.62 1 129.11 ? H12 BME 1008 A 1 HETATM 7 H H21 BME . . . J 6 -11.206 13.639 -0.503 1 135.1 ? H21 BME 1008 A 1 HETATM 8 H H22 BME . . . J 6 -10.478 14.749 -1.672 1 135.1 ? H22 BME 1008 A 1 HETATM 9 H HO1 BME . . . J 6 -9.944 11.441 -0.673 1 126.26 ? HO1 BME 1008 A 1 HETATM 10 H HS2 BME . . . J 6 -9.938 12.219 -3.071 1 136.53 ? HS2 BME 1008 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #