data_5HGL # _model_server_result.job_id fipSGl2Gyc4RDTdc1Fv6CA _model_server_result.datetime_utc '2024-10-26 12:28:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hgl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 5HGL # _exptl.entry_id 5HGL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.522 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HGL _cell.length_a 89.69 _cell.length_b 159.27 _cell.length_c 249.399 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HGL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 F SG CYS 45 F CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 45 A CYS 45 1_555 B SG CYS 14 B CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf3 A SG CYS 198 A CYS 198 1_555 A SG CYS 218 A CYS 218 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 45 B CYS 45 1_555 C SG CYS 14 C CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? disulf ? disulf5 B SG CYS 198 B CYS 198 1_555 B SG CYS 218 B CYS 218 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 C SG CYS 45 C CYS 45 1_555 D SG CYS 14 D CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf7 C SG CYS 198 C CYS 198 1_555 C SG CYS 218 C CYS 218 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 D SG CYS 45 D CYS 45 1_555 E SG CYS 14 E CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf9 D SG CYS 198 D CYS 198 1_555 D SG CYS 218 D CYS 218 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 E SG CYS 45 E CYS 45 1_555 F SG CYS 14 F CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? disulf ? disulf11 E SG CYS 198 E CYS 198 1_555 E SG CYS 218 E CYS 218 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf12 F SG CYS 198 F CYS 198 1_555 F SG CYS 218 F CYS 218 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C27 H27 N3 O2' _chem_comp.formula_weight 425.522 _chem_comp.id 1B0 _chem_comp.mon_nstd_flag . _chem_comp.name N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O24 C23 1B0 doub 1 n n C23 N4 1B0 sing 2 n n C23 C25 1B0 sing 3 n n N4 C5 1B0 sing 4 n n C5 C13 1B0 sing 5 n n C5 C6 1B0 sing 6 n n C13 N15 1B0 sing 7 n n C13 O14 1B0 doub 8 n n N15 C17 1B0 sing 9 n n N15 C16 1B0 sing 10 n n C17 C22 1B0 sing 11 n y C17 C18 1B0 doub 12 n y C22 C21 1B0 doub 13 n y C21 C20 1B0 sing 14 n y C20 C19 1B0 doub 15 n y C19 C18 1B0 sing 16 n y C6 C7 1B0 sing 17 n n C7 C12 1B0 sing 18 n y C7 C8 1B0 doub 19 n y C12 C11 1B0 doub 20 n y C11 C10 1B0 sing 21 n y C10 C9 1B0 doub 22 n y C9 C8 1B0 sing 23 n y C25 C1 1B0 sing 24 n n C1 C26 1B0 sing 25 n y C1 C2 1B0 doub 26 n y C26 C31 1B0 sing 27 n y C26 C27 1B0 doub 28 n y C31 C30 1B0 doub 29 n y C30 C29 1B0 sing 30 n y C29 C28 1B0 doub 31 n y C28 C27 1B0 sing 32 n y C27 N3 1B0 sing 33 n y N3 C2 1B0 sing 34 n y C2 C32 1B0 sing 35 n n N4 H4 1B0 sing 36 n n C25 H251 1B0 sing 37 n n C25 H252 1B0 sing 38 n n C5 H5 1B0 sing 39 n n C6 H61C 1B0 sing 40 n n C6 H62C 1B0 sing 41 n n C16 H161 1B0 sing 42 n n C16 H162 1B0 sing 43 n n C16 H163 1B0 sing 44 n n C22 H22 1B0 sing 45 n n C18 H18 1B0 sing 46 n n C21 H21 1B0 sing 47 n n C20 H20 1B0 sing 48 n n C19 H19 1B0 sing 49 n n C12 H12 1B0 sing 50 n n C8 H8 1B0 sing 51 n n C11 H11 1B0 sing 52 n n C10 H10 1B0 sing 53 n n C9 H9 1B0 sing 54 n n C31 H31 1B0 sing 55 n n C30 H30 1B0 sing 56 n n C29 H29 1B0 sing 57 n n C28 H28 1B0 sing 58 n n N3 H3 1B0 sing 59 n n C32 H321 1B0 sing 60 n n C32 H322 1B0 sing 61 n n C32 H323 1B0 sing 62 n n # _atom_sites.entry_id 5HGL _atom_sites.fract_transf_matrix[1][1] 0.01115 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 1B0 A 1 301 1148 1B0 1B0 . H 2 1B0 B 1 301 1153 1B0 1B0 . I 3 CL B 1 302 1 CL CL . J 2 1B0 C 1 301 1150 1B0 1B0 . K 2 1B0 D 1 301 1149 1B0 1B0 . L 2 1B0 E 1 301 1151 1B0 1B0 . M 2 1B0 F 1 301 1152 1B0 1B0 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O24 1B0 . . . G 2 -36.587 18.548 38.624 1 71.07 ? O24 1B0 301 A 1 HETATM 2 C C23 1B0 . . . G 2 -36.257 17.397 38.395 1 71.63 ? C23 1B0 301 A 1 HETATM 3 N N4 1B0 . . . G 2 -35.358 17.055 37.465 1 65.05 ? N4 1B0 301 A 1 HETATM 4 C C5 1B0 . . . G 2 -34.663 18.008 36.614 1 53.8 ? C5 1B0 301 A 1 HETATM 5 C C13 1B0 . . . G 2 -35.433 18.217 35.33 1 50.33 ? C13 1B0 301 A 1 HETATM 6 N N15 1B0 . . . G 2 -35.452 19.418 34.723 1 52.84 ? N15 1B0 301 A 1 HETATM 7 C C17 1B0 . . . G 2 -34.764 20.49 35.301 1 47.92 ? C17 1B0 301 A 1 HETATM 8 C C22 1B0 . . . G 2 -33.526 20.856 34.789 1 46.85 ? C22 1B0 301 A 1 HETATM 9 C C21 1B0 . . . G 2 -32.827 21.909 35.367 1 49.43 ? C21 1B0 301 A 1 HETATM 10 C C20 1B0 . . . G 2 -33.364 22.594 36.457 1 45.78 ? C20 1B0 301 A 1 HETATM 11 C C19 1B0 . . . G 2 -34.602 22.225 36.968 1 43.15 ? C19 1B0 301 A 1 HETATM 12 C C18 1B0 . . . G 2 -35.306 21.176 36.388 1 46.39 ? C18 1B0 301 A 1 HETATM 13 C C16 1B0 . . . G 2 -36.142 19.733 33.476 1 59.1 ? C16 1B0 301 A 1 HETATM 14 O O14 1B0 . . . G 2 -36.005 17.244 34.859 1 45.24 ? O14 1B0 301 A 1 HETATM 15 C C6 1B0 . . . G 2 -33.301 17.436 36.225 1 58.6 ? C6 1B0 301 A 1 HETATM 16 C C7 1B0 . . . G 2 -32.302 17.606 37.34 1 53.57 ? C7 1B0 301 A 1 HETATM 17 C C12 1B0 . . . G 2 -31.49 18.732 37.385 1 52.53 ? C12 1B0 301 A 1 HETATM 18 C C11 1B0 . . . G 2 -30.57 18.886 38.419 1 51.1 ? C11 1B0 301 A 1 HETATM 19 C C10 1B0 . . . G 2 -30.461 17.91 39.398 1 50.32 ? C10 1B0 301 A 1 HETATM 20 C C9 1B0 . . . G 2 -31.269 16.779 39.344 1 53.25 ? C9 1B0 301 A 1 HETATM 21 C C8 1B0 . . . G 2 -32.188 16.626 38.316 1 52.95 ? C8 1B0 301 A 1 HETATM 22 C C25 1B0 . . . G 2 -36.902 16.255 39.159 1 74.82 ? C25 1B0 301 A 1 HETATM 23 C C1 1B0 . . . G 2 -36.751 16.291 40.663 1 71.45 ? C1 1B0 301 A 1 HETATM 24 C C26 1B0 . . . G 2 -37.649 16.9 41.665 1 75.46 ? C26 1B0 301 A 1 HETATM 25 C C31 1B0 . . . G 2 -38.833 17.61 41.501 1 74.12 ? C31 1B0 301 A 1 HETATM 26 C C30 1B0 . . . G 2 -39.49 18.093 42.634 1 82.83 ? C30 1B0 301 A 1 HETATM 27 C C29 1B0 . . . G 2 -38.96 17.857 43.907 1 80.09 ? C29 1B0 301 A 1 HETATM 28 C C28 1B0 . . . G 2 -37.77 17.139 44.054 1 81.72 ? C28 1B0 301 A 1 HETATM 29 C C27 1B0 . . . G 2 -37.107 16.653 42.927 1 82.45 ? C27 1B0 301 A 1 HETATM 30 N N3 1B0 . . . G 2 -35.962 15.94 42.794 1 79.33 ? N3 1B0 301 A 1 HETATM 31 C C2 1B0 . . . G 2 -35.684 15.677 41.493 1 74.61 ? C2 1B0 301 A 1 HETATM 32 C C32 1B0 . . . G 2 -34.493 14.918 40.98 1 76.67 ? C32 1B0 301 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #