data_5HGL
#
_model_server_result.job_id            G0SGTc0T2SX6mGaOLXI6ng 
_model_server_result.datetime_utc      '2024-11-25 13:13:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hgl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    5HGL 
#
_exptl.entry_id    5HGL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              425.522 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HGL 
_cell.length_a            89.69 
_cell.length_b            159.27 
_cell.length_c            249.399 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HGL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 F SG CYS 45 F CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf2 A SG CYS 45 A CYS 45 1_555 B SG CYS 14 B CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
disulf ? disulf3 A SG CYS 198 A CYS 198 1_555 A SG CYS 218 A CYS 218 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 B SG CYS 45 B CYS 45 1_555 C SG CYS 14 C CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
disulf ? disulf5 B SG CYS 198 B CYS 198 1_555 B SG CYS 218 B CYS 218 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf6 C SG CYS 45 C CYS 45 1_555 D SG CYS 14 D CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
disulf ? disulf7 C SG CYS 198 C CYS 198 1_555 C SG CYS 218 C CYS 218 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf8 D SG CYS 45 D CYS 45 1_555 E SG CYS 14 E CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
disulf ? disulf9 D SG CYS 198 D CYS 198 1_555 D SG CYS 218 D CYS 218 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf10 E SG CYS 45 E CYS 45 1_555 F SG CYS 14 F CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
disulf ? disulf11 E SG CYS 198 E CYS 198 1_555 E SG CYS 218 E CYS 218 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf12 F SG CYS 198 F CYS 198 1_555 F SG CYS 218 F CYS 218 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'C27 H27 N3 O2' 
_chem_comp.formula_weight    425.522 
_chem_comp.id                1B0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O24 C23 1B0 doub 1 n n 
C23 N4 1B0 sing 2 n n 
C23 C25 1B0 sing 3 n n 
N4 C5 1B0 sing 4 n n 
C5 C13 1B0 sing 5 n n 
C5 C6 1B0 sing 6 n n 
C13 N15 1B0 sing 7 n n 
C13 O14 1B0 doub 8 n n 
N15 C17 1B0 sing 9 n n 
N15 C16 1B0 sing 10 n n 
C17 C22 1B0 sing 11 n y 
C17 C18 1B0 doub 12 n y 
C22 C21 1B0 doub 13 n y 
C21 C20 1B0 sing 14 n y 
C20 C19 1B0 doub 15 n y 
C19 C18 1B0 sing 16 n y 
C6 C7 1B0 sing 17 n n 
C7 C12 1B0 sing 18 n y 
C7 C8 1B0 doub 19 n y 
C12 C11 1B0 doub 20 n y 
C11 C10 1B0 sing 21 n y 
C10 C9 1B0 doub 22 n y 
C9 C8 1B0 sing 23 n y 
C25 C1 1B0 sing 24 n n 
C1 C26 1B0 sing 25 n y 
C1 C2 1B0 doub 26 n y 
C26 C31 1B0 sing 27 n y 
C26 C27 1B0 doub 28 n y 
C31 C30 1B0 doub 29 n y 
C30 C29 1B0 sing 30 n y 
C29 C28 1B0 doub 31 n y 
C28 C27 1B0 sing 32 n y 
C27 N3 1B0 sing 33 n y 
N3 C2 1B0 sing 34 n y 
C2 C32 1B0 sing 35 n n 
N4 H4 1B0 sing 36 n n 
C25 H251 1B0 sing 37 n n 
C25 H252 1B0 sing 38 n n 
C5 H5 1B0 sing 39 n n 
C6 H61C 1B0 sing 40 n n 
C6 H62C 1B0 sing 41 n n 
C16 H161 1B0 sing 42 n n 
C16 H162 1B0 sing 43 n n 
C16 H163 1B0 sing 44 n n 
C22 H22 1B0 sing 45 n n 
C18 H18 1B0 sing 46 n n 
C21 H21 1B0 sing 47 n n 
C20 H20 1B0 sing 48 n n 
C19 H19 1B0 sing 49 n n 
C12 H12 1B0 sing 50 n n 
C8 H8 1B0 sing 51 n n 
C11 H11 1B0 sing 52 n n 
C10 H10 1B0 sing 53 n n 
C9 H9 1B0 sing 54 n n 
C31 H31 1B0 sing 55 n n 
C30 H30 1B0 sing 56 n n 
C29 H29 1B0 sing 57 n n 
C28 H28 1B0 sing 58 n n 
N3 H3 1B0 sing 59 n n 
C32 H321 1B0 sing 60 n n 
C32 H322 1B0 sing 61 n n 
C32 H323 1B0 sing 62 n n 
#
_atom_sites.entry_id                     5HGL 
_atom_sites.fract_transf_matrix[1][1]    0.01115 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006279 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00401 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 1B0 A 1 301 1148 1B0 1B0 . 
H 2 1B0 B 1 301 1153 1B0 1B0 . 
I 3 CL B 1 302 1 CL CL . 
J 2 1B0 C 1 301 1150 1B0 1B0 . 
K 2 1B0 D 1 301 1149 1B0 1B0 . 
L 2 1B0 E 1 301 1151 1B0 1B0 . 
M 2 1B0 F 1 301 1152 1B0 1B0 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O24 1B0 . . . M 2 -52.988 -7.206 29.771 1 113.3 ? O24 1B0 301 F 1 
HETATM 2 C C23 1B0 . . . M 2 -51.797 -7.451 29.871 1 93.43 ? C23 1B0 301 F 1 
HETATM 3 N N4 1B0 . . . M 2 -50.835 -6.619 29.452 1 97.56 ? N4 1B0 301 F 1 
HETATM 4 C C5 1B0 . . . M 2 -51.084 -5.331 28.807 1 89.95 ? C5 1B0 301 F 1 
HETATM 5 C C13 1B0 . . . M 2 -51.277 -5.499 27.315 1 95.15 ? C13 1B0 301 F 1 
HETATM 6 N N15 1B0 . . . M 2 -52.131 -4.728 26.606 1 92.4 ? N15 1B0 301 F 1 
HETATM 7 C C17 1B0 . . . M 2 -52.882 -3.735 27.258 1 83.44 ? C17 1B0 301 F 1 
HETATM 8 C C22 1B0 . . . M 2 -52.459 -2.412 27.182 1 86.3 ? C22 1B0 301 F 1 
HETATM 9 C C21 1B0 . . . M 2 -53.181 -1.417 27.834 1 84.25 ? C21 1B0 301 F 1 
HETATM 10 C C20 1B0 . . . M 2 -54.323 -1.738 28.571 1 76.9 ? C20 1B0 301 F 1 
HETATM 11 C C19 1B0 . . . M 2 -54.748 -3.061 28.652 1 67.44 ? C19 1B0 301 F 1 
HETATM 12 C C18 1B0 . . . M 2 -54.029 -4.058 27.992 1 76.33 ? C18 1B0 301 F 1 
HETATM 13 C C16 1B0 . . . M 2 -52.345 -4.841 25.162 1 93.04 ? C16 1B0 301 F 1 
HETATM 14 O O14 1B0 . . . M 2 -50.598 -6.361 26.778 1 96.55 ? O14 1B0 301 F 1 
HETATM 15 C C6 1B0 . . . M 2 -49.851 -4.45 28.995 1 91.58 ? C6 1B0 301 F 1 
HETATM 16 C C7 1B0 . . . M 2 -49.845 -3.816 30.362 1 77.63 ? C7 1B0 301 F 1 
HETATM 17 C C12 1B0 . . . M 2 -50.558 -2.644 30.602 1 76.9 ? C12 1B0 301 F 1 
HETATM 18 C C11 1B0 . . . M 2 -50.547 -2.067 31.872 1 65.61 ? C11 1B0 301 F 1 
HETATM 19 C C10 1B0 . . . M 2 -49.817 -2.663 32.895 1 64.09 ? C10 1B0 301 F 1 
HETATM 20 C C9 1B0 . . . M 2 -49.099 -3.83 32.645 1 63.04 ? C9 1B0 301 F 1 
HETATM 21 C C8 1B0 . . . M 2 -49.111 -4.404 31.381 1 66 ? C8 1B0 301 F 1 
HETATM 22 C C25 1B0 . . . M 2 -51.36 -8.758 30.502 1 84.26 ? C25 1B0 301 F 1 
HETATM 23 C C1 1B0 . . . M 2 -51.72 -8.784 31.968 1 74.12 ? C1 1B0 301 F 1 
HETATM 24 C C26 1B0 . . . M 2 -52.949 -9.314 32.59 1 79.03 ? C26 1B0 301 F 1 
HETATM 25 C C31 1B0 . . . M 2 -54.054 -9.928 32.007 1 76.91 ? C31 1B0 301 F 1 
HETATM 26 C C30 1B0 . . . M 2 -55.096 -10.348 32.836 1 82.23 ? C30 1B0 301 F 1 
HETATM 27 C C29 1B0 . . . M 2 -55.014 -10.156 34.222 1 85.52 ? C29 1B0 301 F 1 
HETATM 28 C C28 1B0 . . . M 2 -53.895 -9.542 34.792 1 80.6 ? C28 1B0 301 F 1 
HETATM 29 C C27 1B0 . . . M 2 -52.849 -9.116 33.971 1 89.79 ? C27 1B0 301 F 1 
HETATM 30 N N3 1B0 . . . M 2 -51.67 -8.505 34.255 1 90.34 ? N3 1B0 301 F 1 
HETATM 31 C C2 1B0 . . . M 2 -50.942 -8.279 33.132 1 82.08 ? C2 1B0 301 F 1 
HETATM 32 C C32 1B0 . . . M 2 -49.594 -7.618 33.085 1 89.38 ? C32 1B0 301 F 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#