data_5HGP # _model_server_result.job_id bvXmKm6_ubXTKfZPYHkE2w _model_server_result.datetime_utc '2024-10-26 12:22:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hgp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5HGP # _exptl.entry_id 5HGP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.169 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZENE HEXACARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HGP _cell.length_a 90.759 _cell.length_b 90.759 _cell.length_c 56.76 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_855 -y+3,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 272.277 0 0 3 'crystal symmetry operation' 3_885 -x+y+3,-x+3,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 136.1385 235.798799 0 4 'crystal symmetry operation' 4_975 -x+4,-y+2,z -1 0 0 0 -1 0 0 0 1 272.277 157.199199 0 5 'crystal symmetry operation' 5_675 y+1,-x+y+2,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 157.199199 0 6 'crystal symmetry operation' 6_645 x-y+1,x-1,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 136.1385 -78.5996 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 45 A CYS 45 5_675 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? disulf ? disulf2 A SG CYS 198 A CYS 198 1_555 A SG CYS 218 A CYS 218 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.069 ? # _chem_comp.formula 'C12 H6 O12' _chem_comp.formula_weight 342.169 _chem_comp.id BHC _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZENE HEXACARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 CO1 BHC sing 70 n n C1 C2 BHC doub 71 n y C1 C6 BHC sing 72 n y CO1 O11 BHC doub 73 n n CO1 O12 BHC sing 74 n n O12 H12 BHC sing 75 n n C2 CO2 BHC sing 76 n n C2 C3 BHC sing 77 n y CO2 O21 BHC doub 78 n n CO2 O22 BHC sing 79 n n O22 H22 BHC sing 80 n n C3 CO3 BHC sing 81 n n C3 C4 BHC doub 82 n y CO3 O31 BHC doub 83 n n CO3 O32 BHC sing 84 n n O32 H32 BHC sing 85 n n C4 CO4 BHC sing 86 n n C4 C5 BHC sing 87 n y CO4 O41 BHC doub 88 n n CO4 O42 BHC sing 89 n n O42 H42 BHC sing 90 n n C5 CO5 BHC sing 91 n n C5 C6 BHC doub 92 n y CO5 O51 BHC doub 93 n n CO5 O52 BHC sing 94 n n O52 H52 BHC sing 95 n n C6 CO6 BHC sing 96 n n CO6 O61 BHC doub 97 n n CO6 O62 BHC sing 98 n n O62 H62 BHC sing 99 n n # _atom_sites.entry_id 5HGP _atom_sites.fract_transf_matrix[1][1] 0.011018 _atom_sites.fract_transf_matrix[1][2] 0.006361 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BHC A 1 301 1 BHC DRG . C 3 HOH A 1 401 63 HOH HOH . C 3 HOH A 2 402 47 HOH HOH . C 3 HOH A 3 403 119 HOH HOH . C 3 HOH A 4 404 40 HOH HOH . C 3 HOH A 5 405 56 HOH HOH . C 3 HOH A 6 406 112 HOH HOH . C 3 HOH A 7 407 52 HOH HOH . C 3 HOH A 8 408 21 HOH HOH . C 3 HOH A 9 409 68 HOH HOH . C 3 HOH A 10 410 57 HOH HOH . C 3 HOH A 11 411 59 HOH HOH . C 3 HOH A 12 412 10 HOH HOH . C 3 HOH A 13 413 109 HOH HOH . C 3 HOH A 14 414 76 HOH HOH . C 3 HOH A 15 415 66 HOH HOH . C 3 HOH A 16 416 62 HOH HOH . C 3 HOH A 17 417 97 HOH HOH . C 3 HOH A 18 418 110 HOH HOH . C 3 HOH A 19 419 23 HOH HOH . C 3 HOH A 20 420 18 HOH HOH . C 3 HOH A 21 421 79 HOH HOH . C 3 HOH A 22 422 26 HOH HOH . C 3 HOH A 23 423 3 HOH HOH . C 3 HOH A 24 424 8 HOH HOH . C 3 HOH A 25 425 45 HOH HOH . C 3 HOH A 26 426 41 HOH HOH . C 3 HOH A 27 427 100 HOH HOH . C 3 HOH A 28 428 111 HOH HOH . C 3 HOH A 29 429 104 HOH HOH . C 3 HOH A 30 430 51 HOH HOH . C 3 HOH A 31 431 54 HOH HOH . C 3 HOH A 32 432 102 HOH HOH . C 3 HOH A 33 433 5 HOH HOH . C 3 HOH A 34 434 98 HOH HOH . C 3 HOH A 35 435 85 HOH HOH . C 3 HOH A 36 436 77 HOH HOH . C 3 HOH A 37 437 1 HOH HOH . C 3 HOH A 38 438 31 HOH HOH . C 3 HOH A 39 439 118 HOH HOH . C 3 HOH A 40 440 116 HOH HOH . C 3 HOH A 41 441 49 HOH HOH . C 3 HOH A 42 442 27 HOH HOH . C 3 HOH A 43 443 11 HOH HOH . C 3 HOH A 44 444 22 HOH HOH . C 3 HOH A 45 445 7 HOH HOH . C 3 HOH A 46 446 83 HOH HOH . C 3 HOH A 47 447 24 HOH HOH . C 3 HOH A 48 448 113 HOH HOH . C 3 HOH A 49 449 90 HOH HOH . C 3 HOH A 50 450 105 HOH HOH . C 3 HOH A 51 451 69 HOH HOH . C 3 HOH A 52 452 14 HOH HOH . C 3 HOH A 53 453 13 HOH HOH . C 3 HOH A 54 454 101 HOH HOH . C 3 HOH A 55 455 33 HOH HOH . C 3 HOH A 56 456 55 HOH HOH . C 3 HOH A 57 457 37 HOH HOH . C 3 HOH A 58 458 75 HOH HOH . C 3 HOH A 59 459 17 HOH HOH . C 3 HOH A 60 460 78 HOH HOH . C 3 HOH A 61 461 99 HOH HOH . C 3 HOH A 62 462 2 HOH HOH . C 3 HOH A 63 463 20 HOH HOH . C 3 HOH A 64 464 4 HOH HOH . C 3 HOH A 65 465 114 HOH HOH . C 3 HOH A 66 466 43 HOH HOH . C 3 HOH A 67 467 82 HOH HOH . C 3 HOH A 68 468 25 HOH HOH . C 3 HOH A 69 469 86 HOH HOH . C 3 HOH A 70 470 94 HOH HOH . C 3 HOH A 71 471 44 HOH HOH . C 3 HOH A 72 472 64 HOH HOH . C 3 HOH A 73 473 96 HOH HOH . C 3 HOH A 74 474 91 HOH HOH . C 3 HOH A 75 475 81 HOH HOH . C 3 HOH A 76 476 106 HOH HOH . C 3 HOH A 77 477 9 HOH HOH . C 3 HOH A 78 478 42 HOH HOH . C 3 HOH A 79 479 12 HOH HOH . C 3 HOH A 80 480 39 HOH HOH . C 3 HOH A 81 481 30 HOH HOH . C 3 HOH A 82 482 53 HOH HOH . C 3 HOH A 83 483 92 HOH HOH . C 3 HOH A 84 484 29 HOH HOH . C 3 HOH A 85 485 58 HOH HOH . C 3 HOH A 86 486 103 HOH HOH . C 3 HOH A 87 487 84 HOH HOH . C 3 HOH A 88 488 117 HOH HOH . C 3 HOH A 89 489 15 HOH HOH . C 3 HOH A 90 490 16 HOH HOH . C 3 HOH A 91 491 6 HOH HOH . C 3 HOH A 92 492 65 HOH HOH . C 3 HOH A 93 493 50 HOH HOH . C 3 HOH A 94 494 46 HOH HOH . C 3 HOH A 95 495 28 HOH HOH . C 3 HOH A 96 496 80 HOH HOH . C 3 HOH A 97 497 34 HOH HOH . C 3 HOH A 98 498 19 HOH HOH . C 3 HOH A 99 499 32 HOH HOH . C 3 HOH A 100 500 95 HOH HOH . C 3 HOH A 101 501 61 HOH HOH . C 3 HOH A 102 502 71 HOH HOH . C 3 HOH A 103 503 60 HOH HOH . C 3 HOH A 104 504 35 HOH HOH . C 3 HOH A 105 505 93 HOH HOH . C 3 HOH A 106 506 73 HOH HOH . C 3 HOH A 107 507 108 HOH HOH . C 3 HOH A 108 508 107 HOH HOH . C 3 HOH A 109 509 89 HOH HOH . C 3 HOH A 110 510 36 HOH HOH . C 3 HOH A 111 511 74 HOH HOH . C 3 HOH A 112 512 115 HOH HOH . C 3 HOH A 113 513 72 HOH HOH . C 3 HOH A 114 514 67 HOH HOH . C 3 HOH A 115 515 70 HOH HOH . C 3 HOH A 116 516 87 HOH HOH . C 3 HOH A 117 517 48 HOH HOH . C 3 HOH A 118 518 38 HOH HOH . C 3 HOH A 119 519 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BHC . . . B 2 135.781 79.951 6.366 0.17 97.86 ? C1 BHC 301 A 1 HETATM 2 C CO1 BHC . . . B 2 135.389 81.285 6.371 0.17 96.53 ? CO1 BHC 301 A 1 HETATM 3 O O11 BHC . . . B 2 135.384 81.937 5.304 0.17 96.97 ? O11 BHC 301 A 1 HETATM 4 O O12 BHC . . . B 2 135.043 81.834 7.439 0.17 91.71 ? O12 BHC 301 A 1 HETATM 5 C C2 BHC . . . B 2 134.821 78.944 6.368 0.17 98.19 ? C2 BHC 301 A 1 HETATM 6 C CO2 BHC . . . B 2 133.469 79.272 6.375 0.17 97.16 ? CO2 BHC 301 A 1 HETATM 7 O O21 BHC . . . B 2 132.901 79.6 5.311 0.17 97.62 ? O21 BHC 301 A 1 HETATM 8 O O22 BHC . . . B 2 132.821 79.24 7.443 0.17 92.65 ? O22 BHC 301 A 1 HETATM 9 C C3 BHC . . . B 2 135.213 77.609 6.363 0.17 98.13 ? C3 BHC 301 A 1 HETATM 10 C CO3 BHC . . . B 2 134.253 76.603 6.364 0.17 97.15 ? CO3 BHC 301 A 1 HETATM 11 O O31 BHC . . . B 2 133.664 76.3 5.303 0.17 97.62 ? O31 BHC 301 A 1 HETATM 12 O O32 BHC . . . B 2 133.977 76 7.424 0.17 92.74 ? O32 BHC 301 A 1 HETATM 13 C C4 BHC . . . B 2 136.565 77.282 6.356 0.17 97.62 ? C4 BHC 301 A 1 HETATM 14 C CO4 BHC . . . B 2 136.956 75.947 6.349 0.17 96.4 ? CO4 BHC 301 A 1 HETATM 15 O O41 BHC . . . B 2 136.886 75.282 5.293 0.17 96.9 ? O41 BHC 301 A 1 HETATM 16 O O42 BHC . . . B 2 137.377 75.412 7.397 0.17 91.81 ? O42 BHC 301 A 1 HETATM 17 C C5 BHC . . . B 2 137.524 78.288 6.354 0.17 96.82 ? C5 BHC 301 A 1 HETATM 18 C CO5 BHC . . . B 2 138.876 77.96 6.345 0.17 94.12 ? CO5 BHC 301 A 1 HETATM 19 O O51 BHC . . . B 2 139.423 77.596 5.282 0.17 92.98 ? O51 BHC 301 A 1 HETATM 20 O O52 BHC . . . B 2 139.545 78.028 7.399 0.17 88.94 ? O52 BHC 301 A 1 HETATM 21 C C6 BHC . . . B 2 137.133 79.623 6.359 0.17 97.34 ? C6 BHC 301 A 1 HETATM 22 C CO6 BHC . . . B 2 138.093 80.629 6.356 0.17 95.72 ? CO6 BHC 301 A 1 HETATM 23 O O61 BHC . . . B 2 138.668 80.938 5.29 0.17 96.16 ? O61 BHC 301 A 1 HETATM 24 O O62 BHC . . . B 2 138.381 81.224 7.416 0.17 90.67 ? O62 BHC 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 24 #