data_5HI7 # _model_server_result.job_id 27vJjHycWBl5_BC5B9wq0Q _model_server_result.datetime_utc '2024-10-19 17:20:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hi7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 5HI7 # _exptl.entry_id 5HI7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HI7 _cell.length_a 60.47 _cell.length_b 66.401 _cell.length_c 104.851 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HI7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 53 A CYS 49 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc2 A SG CYS 56 A CYS 52 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 A SG CYS 66 A CYS 62 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc4 A SG CYS 69 A CYS 65 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc5 A SG CYS 75 A CYS 71 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 A SG CYS 79 A CYS 75 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc7 A NE2 HIS 87 A HIS 83 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc8 A SG CYS 91 A CYS 87 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc9 A SG CYS 212 A CYS 208 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc10 A SG CYS 265 A CYS 261 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc11 A SG CYS 267 A CYS 263 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc12 A SG CYS 270 A CYS 266 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc13 A OD1 ASP 336 A ASP 332 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc14 A OE1 GLN 376 A GLN 372 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc15 E MG MG . A MG 504 1_555 I O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc16 E MG MG . A MG 504 1_555 I O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc17 E MG MG . A MG 504 1_555 I O HOH . A HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc18 E MG MG . A MG 504 1_555 I O HOH . A HOH 677 3_644 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc19 E MG MG . A MG 504 1_555 I O HOH . A HOH 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc20 E MG MG . A MG 504 1_555 I O HOH . A HOH 701 3_644 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc21 F MG MG . A MG 505 1_555 I O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc22 F MG MG . A MG 505 1_555 I O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc23 F MG MG . A MG 505 1_555 I O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc24 F MG MG . A MG 505 1_555 I O HOH . A HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 149 n n S C1 DMS sing 150 n n S C2 DMS sing 151 n n C1 H11 DMS sing 152 n n C1 H12 DMS sing 153 n n C1 H13 DMS sing 154 n n C2 H21 DMS sing 155 n n C2 H22 DMS sing 156 n n C2 H23 DMS sing 157 n n # _atom_sites.entry_id 5HI7 _atom_sites.fract_transf_matrix[1][1] 0.016537 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 1 ZN ZN . C 2 ZN A 1 502 2 ZN ZN . D 2 ZN A 1 503 3 ZN ZN . E 3 MG A 1 504 1 MG MO6 . F 3 MG A 1 505 2 MG MO6 . G 4 DMS A 1 506 3 DMS DMS . H 5 62X A 1 507 1 62X LIG . I 6 HOH A 1 601 71 HOH HOH . I 6 HOH A 2 602 6 HOH HOH . I 6 HOH A 3 603 118 HOH HOH . I 6 HOH A 4 604 1 HOH MO6 . I 6 HOH A 5 605 2 HOH MO6 . I 6 HOH A 6 606 2 HOH MO6 . I 6 HOH A 7 607 106 HOH HOH . I 6 HOH A 8 608 114 HOH HOH . I 6 HOH A 9 609 16 HOH HOH . I 6 HOH A 10 610 109 HOH HOH . I 6 HOH A 11 611 3 HOH HOH . I 6 HOH A 12 612 1 HOH MO6 . I 6 HOH A 13 613 47 HOH HOH . I 6 HOH A 14 614 61 HOH HOH . I 6 HOH A 15 615 22 HOH HOH . I 6 HOH A 16 616 29 HOH HOH . I 6 HOH A 17 617 28 HOH HOH . I 6 HOH A 18 618 101 HOH HOH . I 6 HOH A 19 619 117 HOH HOH . I 6 HOH A 20 620 20 HOH HOH . I 6 HOH A 21 621 2 HOH MO6 . I 6 HOH A 22 622 58 HOH HOH . I 6 HOH A 23 623 13 HOH HOH . I 6 HOH A 24 624 8 HOH HOH . I 6 HOH A 25 625 45 HOH HOH . I 6 HOH A 26 626 1 HOH MO6 . I 6 HOH A 27 627 113 HOH HOH . I 6 HOH A 28 628 34 HOH HOH . I 6 HOH A 29 629 103 HOH HOH . I 6 HOH A 30 630 59 HOH HOH . I 6 HOH A 31 631 7 HOH HOH . I 6 HOH A 32 632 21 HOH HOH . I 6 HOH A 33 633 52 HOH HOH . I 6 HOH A 34 634 66 HOH HOH . I 6 HOH A 35 635 14 HOH HOH . I 6 HOH A 36 636 25 HOH HOH . I 6 HOH A 37 637 41 HOH HOH . I 6 HOH A 38 638 53 HOH HOH . I 6 HOH A 39 639 57 HOH HOH . I 6 HOH A 40 640 50 HOH HOH . I 6 HOH A 41 641 32 HOH HOH . I 6 HOH A 42 642 18 HOH HOH . I 6 HOH A 43 643 89 HOH HOH . I 6 HOH A 44 644 39 HOH HOH . I 6 HOH A 45 645 10 HOH HOH . I 6 HOH A 46 646 38 HOH HOH . I 6 HOH A 47 647 102 HOH HOH . I 6 HOH A 48 648 86 HOH HOH . I 6 HOH A 49 649 37 HOH HOH . I 6 HOH A 50 650 83 HOH HOH . I 6 HOH A 51 651 30 HOH HOH . I 6 HOH A 52 652 35 HOH HOH . I 6 HOH A 53 653 88 HOH HOH . I 6 HOH A 54 654 105 HOH HOH . I 6 HOH A 55 655 48 HOH HOH . I 6 HOH A 56 656 54 HOH HOH . I 6 HOH A 57 657 97 HOH HOH . I 6 HOH A 58 658 75 HOH HOH . I 6 HOH A 59 659 85 HOH HOH . I 6 HOH A 60 660 43 HOH HOH . I 6 HOH A 61 661 77 HOH HOH . I 6 HOH A 62 662 55 HOH HOH . I 6 HOH A 63 663 65 HOH HOH . I 6 HOH A 64 664 74 HOH HOH . I 6 HOH A 65 665 11 HOH HOH . I 6 HOH A 66 666 62 HOH HOH . I 6 HOH A 67 667 15 HOH HOH . I 6 HOH A 68 668 82 HOH HOH . I 6 HOH A 69 669 9 HOH HOH . I 6 HOH A 70 670 26 HOH HOH . I 6 HOH A 71 671 68 HOH HOH . I 6 HOH A 72 672 42 HOH HOH . I 6 HOH A 73 673 5 HOH HOH . I 6 HOH A 74 674 12 HOH HOH . I 6 HOH A 75 675 98 HOH HOH . I 6 HOH A 76 676 67 HOH HOH . I 6 HOH A 77 677 1 HOH MO6 . I 6 HOH A 78 678 2 HOH HOH . I 6 HOH A 79 679 44 HOH HOH . I 6 HOH A 80 680 31 HOH HOH . I 6 HOH A 81 681 40 HOH HOH . I 6 HOH A 82 682 87 HOH HOH . I 6 HOH A 83 683 49 HOH HOH . I 6 HOH A 84 684 23 HOH HOH . I 6 HOH A 85 685 78 HOH HOH . I 6 HOH A 86 686 36 HOH HOH . I 6 HOH A 87 687 91 HOH HOH . I 6 HOH A 88 688 94 HOH HOH . I 6 HOH A 89 689 17 HOH HOH . I 6 HOH A 90 690 27 HOH HOH . I 6 HOH A 91 691 24 HOH HOH . I 6 HOH A 92 692 51 HOH HOH . I 6 HOH A 93 693 4 HOH HOH . I 6 HOH A 94 694 111 HOH HOH . I 6 HOH A 95 695 1 HOH MO6 . I 6 HOH A 96 696 112 HOH HOH . I 6 HOH A 97 697 64 HOH HOH . I 6 HOH A 98 698 60 HOH HOH . I 6 HOH A 99 699 90 HOH HOH . I 6 HOH A 100 700 72 HOH HOH . I 6 HOH A 101 701 1 HOH MO6 . I 6 HOH A 102 702 63 HOH HOH . I 6 HOH A 103 703 69 HOH HOH . I 6 HOH A 104 704 46 HOH HOH . I 6 HOH A 105 705 19 HOH HOH . I 6 HOH A 106 706 115 HOH HOH . I 6 HOH A 107 707 56 HOH HOH . I 6 HOH A 108 708 81 HOH HOH . I 6 HOH A 109 709 108 HOH HOH . I 6 HOH A 110 710 110 HOH HOH . I 6 HOH A 111 711 73 HOH HOH . I 6 HOH A 112 712 70 HOH HOH . I 6 HOH A 113 713 2 HOH MO6 . I 6 HOH A 114 714 93 HOH HOH . I 6 HOH A 115 715 79 HOH HOH . I 6 HOH A 116 716 84 HOH HOH . I 6 HOH A 117 717 99 HOH HOH . I 6 HOH A 118 718 1 HOH HOH . I 6 HOH A 119 719 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . G 4 16.861 7.151 -14.112 1 47.64 ? S DMS 506 A 1 HETATM 2 O O DMS . . . G 4 17.008 5.86 -13.37 1 49.45 ? O DMS 506 A 1 HETATM 3 C C1 DMS . . . G 4 18.473 7.637 -14.774 1 46.46 ? C1 DMS 506 A 1 HETATM 4 C C2 DMS . . . G 4 15.939 6.854 -15.645 1 46.05 ? C2 DMS 506 A 1 HETATM 5 H H11 DMS . . . G 4 18.866 6.848 -15.362 1 55.76 ? H11 DMS 506 A 1 HETATM 6 H H12 DMS . . . G 4 19.136 7.844 -13.975 1 55.76 ? H12 DMS 506 A 1 HETATM 7 H H13 DMS . . . G 4 18.363 8.502 -15.375 1 55.76 ? H13 DMS 506 A 1 HETATM 8 H H21 DMS . . . G 4 14.952 6.55 -15.41 1 55.26 ? H21 DMS 506 A 1 HETATM 9 H H22 DMS . . . G 4 16.418 6.093 -16.204 1 55.26 ? H22 DMS 506 A 1 HETATM 10 H H23 DMS . . . G 4 15.907 7.745 -16.216 1 55.26 ? H23 DMS 506 A 1 # _model_server_stats.io_time_ms 206 _model_server_stats.parse_time_ms 86 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #