data_5HII # _model_server_result.job_id HyCScrBRgWIqAXRWk1pf6A _model_server_result.datetime_utc '2024-10-28 16:23:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5HII # _exptl.entry_id 5HII _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HII _cell.length_a 51.729 _cell.length_b 120.45 _cell.length_c 130.941 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HII _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5HII _atom_sites.fract_transf_matrix[1][1] 0.019332 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 1 EDO EDO . C 2 EDO A 1 302 1 EDO EDO . D 2 EDO A 1 303 1 EDO EDO . E 2 EDO A 1 304 1 EDO EDO . F 2 EDO A 1 305 1 EDO EDO . G 2 EDO A 1 306 1 EDO EDO . H 3 HOH A 1 401 142 HOH HOH . H 3 HOH A 2 402 91 HOH HOH . H 3 HOH A 3 403 80 HOH HOH . H 3 HOH A 4 404 96 HOH HOH . H 3 HOH A 5 405 92 HOH HOH . H 3 HOH A 6 406 109 HOH HOH . H 3 HOH A 7 407 74 HOH HOH . H 3 HOH A 8 408 152 HOH HOH . H 3 HOH A 9 409 117 HOH HOH . H 3 HOH A 10 410 21 HOH HOH . H 3 HOH A 11 411 35 HOH HOH . H 3 HOH A 12 412 95 HOH HOH . H 3 HOH A 13 413 87 HOH HOH . H 3 HOH A 14 414 128 HOH HOH . H 3 HOH A 15 415 127 HOH HOH . H 3 HOH A 16 416 89 HOH HOH . H 3 HOH A 17 417 34 HOH HOH . H 3 HOH A 18 418 136 HOH HOH . H 3 HOH A 19 419 5 HOH HOH . H 3 HOH A 20 420 78 HOH HOH . H 3 HOH A 21 421 118 HOH HOH . H 3 HOH A 22 422 8 HOH HOH . H 3 HOH A 23 423 43 HOH HOH . H 3 HOH A 24 424 16 HOH HOH . H 3 HOH A 25 425 9 HOH HOH . H 3 HOH A 26 426 63 HOH HOH . H 3 HOH A 27 427 102 HOH HOH . H 3 HOH A 28 428 61 HOH HOH . H 3 HOH A 29 429 20 HOH HOH . H 3 HOH A 30 430 37 HOH HOH . H 3 HOH A 31 431 13 HOH HOH . H 3 HOH A 32 432 19 HOH HOH . H 3 HOH A 33 433 45 HOH HOH . H 3 HOH A 34 434 25 HOH HOH . H 3 HOH A 35 435 12 HOH HOH . H 3 HOH A 36 436 149 HOH HOH . H 3 HOH A 37 437 36 HOH HOH . H 3 HOH A 38 438 56 HOH HOH . H 3 HOH A 39 439 24 HOH HOH . H 3 HOH A 40 440 110 HOH HOH . H 3 HOH A 41 441 46 HOH HOH . H 3 HOH A 42 442 64 HOH HOH . H 3 HOH A 43 443 28 HOH HOH . H 3 HOH A 44 444 49 HOH HOH . H 3 HOH A 45 445 55 HOH HOH . H 3 HOH A 46 446 48 HOH HOH . H 3 HOH A 47 447 75 HOH HOH . H 3 HOH A 48 448 94 HOH HOH . H 3 HOH A 49 449 52 HOH HOH . H 3 HOH A 50 450 40 HOH HOH . H 3 HOH A 51 451 1 HOH HOH . H 3 HOH A 52 452 4 HOH HOH . H 3 HOH A 53 453 58 HOH HOH . H 3 HOH A 54 454 85 HOH HOH . H 3 HOH A 55 455 11 HOH HOH . H 3 HOH A 56 456 112 HOH HOH . H 3 HOH A 57 457 33 HOH HOH . H 3 HOH A 58 458 137 HOH HOH . H 3 HOH A 59 459 68 HOH HOH . H 3 HOH A 60 460 54 HOH HOH . H 3 HOH A 61 461 29 HOH HOH . H 3 HOH A 62 462 22 HOH HOH . H 3 HOH A 63 463 115 HOH HOH . H 3 HOH A 64 464 72 HOH HOH . H 3 HOH A 65 465 17 HOH HOH . H 3 HOH A 66 466 145 HOH HOH . H 3 HOH A 67 467 66 HOH HOH . H 3 HOH A 68 468 6 HOH HOH . H 3 HOH A 69 469 76 HOH HOH . H 3 HOH A 70 470 41 HOH HOH . H 3 HOH A 71 471 86 HOH HOH . H 3 HOH A 72 472 7 HOH HOH . H 3 HOH A 73 473 3 HOH HOH . H 3 HOH A 74 474 2 HOH HOH . H 3 HOH A 75 475 31 HOH HOH . H 3 HOH A 76 476 57 HOH HOH . H 3 HOH A 77 477 139 HOH HOH . H 3 HOH A 78 478 100 HOH HOH . H 3 HOH A 79 479 114 HOH HOH . H 3 HOH A 80 480 18 HOH HOH . H 3 HOH A 81 481 130 HOH HOH . H 3 HOH A 82 482 147 HOH HOH . H 3 HOH A 83 483 73 HOH HOH . H 3 HOH A 84 484 15 HOH HOH . H 3 HOH A 85 485 90 HOH HOH . H 3 HOH A 86 486 27 HOH HOH . H 3 HOH A 87 487 10 HOH HOH . H 3 HOH A 88 488 153 HOH HOH . H 3 HOH A 89 489 83 HOH HOH . H 3 HOH A 90 490 138 HOH HOH . H 3 HOH A 91 491 26 HOH HOH . H 3 HOH A 92 492 51 HOH HOH . H 3 HOH A 93 493 60 HOH HOH . H 3 HOH A 94 494 53 HOH HOH . H 3 HOH A 95 495 98 HOH HOH . H 3 HOH A 96 496 44 HOH HOH . H 3 HOH A 97 497 113 HOH HOH . H 3 HOH A 98 498 122 HOH HOH . H 3 HOH A 99 499 39 HOH HOH . H 3 HOH A 100 500 129 HOH HOH . H 3 HOH A 101 501 32 HOH HOH . H 3 HOH A 102 502 148 HOH HOH . H 3 HOH A 103 503 42 HOH HOH . H 3 HOH A 104 504 30 HOH HOH . H 3 HOH A 105 505 69 HOH HOH . H 3 HOH A 106 506 38 HOH HOH . H 3 HOH A 107 507 14 HOH HOH . H 3 HOH A 108 508 155 HOH HOH . H 3 HOH A 109 509 116 HOH HOH . H 3 HOH A 110 510 71 HOH HOH . H 3 HOH A 111 511 23 HOH HOH . H 3 HOH A 112 512 67 HOH HOH . H 3 HOH A 113 513 93 HOH HOH . H 3 HOH A 114 514 124 HOH HOH . H 3 HOH A 115 515 99 HOH HOH . H 3 HOH A 116 516 59 HOH HOH . H 3 HOH A 117 517 120 HOH HOH . H 3 HOH A 118 518 65 HOH HOH . H 3 HOH A 119 519 133 HOH HOH . H 3 HOH A 120 520 70 HOH HOH . H 3 HOH A 121 521 134 HOH HOH . H 3 HOH A 122 522 81 HOH HOH . H 3 HOH A 123 523 121 HOH HOH . H 3 HOH A 124 524 106 HOH HOH . H 3 HOH A 125 525 151 HOH HOH . H 3 HOH A 126 526 119 HOH HOH . H 3 HOH A 127 527 150 HOH HOH . H 3 HOH A 128 528 79 HOH HOH . H 3 HOH A 129 529 88 HOH HOH . H 3 HOH A 130 530 126 HOH HOH . H 3 HOH A 131 531 108 HOH HOH . H 3 HOH A 132 532 135 HOH HOH . H 3 HOH A 133 533 103 HOH HOH . H 3 HOH A 134 534 50 HOH HOH . H 3 HOH A 135 535 82 HOH HOH . H 3 HOH A 136 536 141 HOH HOH . H 3 HOH A 137 537 132 HOH HOH . H 3 HOH A 138 538 84 HOH HOH . H 3 HOH A 139 539 140 HOH HOH . H 3 HOH A 140 540 111 HOH HOH . H 3 HOH A 141 541 131 HOH HOH . H 3 HOH A 142 542 123 HOH HOH . H 3 HOH A 143 543 107 HOH HOH . H 3 HOH A 144 544 143 HOH HOH . H 3 HOH A 145 545 105 HOH HOH . H 3 HOH A 146 546 154 HOH HOH . H 3 HOH A 147 547 144 HOH HOH . H 3 HOH A 148 548 62 HOH HOH . H 3 HOH A 149 549 125 HOH HOH . H 3 HOH A 150 550 77 HOH HOH . H 3 HOH A 151 551 146 HOH HOH . H 3 HOH A 152 552 47 HOH HOH . H 3 HOH A 153 553 101 HOH HOH . H 3 HOH A 154 554 97 HOH HOH . H 3 HOH A 155 555 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 2 37.224 27.835 26.675 1 45.71 ? C1 EDO 305 A 1 HETATM 2 O O1 EDO . . . F 2 36.649 28.591 25.675 1 45.17 ? O1 EDO 305 A 1 HETATM 3 C C2 EDO . . . F 2 37.496 26.466 26.149 1 58.16 ? C2 EDO 305 A 1 HETATM 4 O O2 EDO . . . F 2 36.549 25.588 26.636 1 61.06 ? O2 EDO 305 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #