data_5HIK # _model_server_result.job_id lg6DD6SVOGnSWCG2N95SGA _model_server_result.datetime_utc '2024-10-28 16:21:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hik # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5HIK # _exptl.entry_id 5HIK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HIK _cell.length_a 51.906 _cell.length_b 120.97 _cell.length_c 131.789 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HIK _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 286 n n N HN1 SAM sing 287 n n N HN2 SAM sing 288 n n CA C SAM sing 289 n n CA CB SAM sing 290 n n CA HA SAM sing 291 n n C O SAM doub 292 n n C OXT SAM sing 293 n n CB CG SAM sing 294 n n CB HB1 SAM sing 295 n n CB HB2 SAM sing 296 n n CG SD SAM sing 297 n n CG HG1 SAM sing 298 n n CG HG2 SAM sing 299 n n SD CE SAM sing 300 n n SD C5' SAM sing 301 n n CE HE1 SAM sing 302 n n CE HE2 SAM sing 303 n n CE HE3 SAM sing 304 n n C5' C4' SAM sing 305 n n C5' "H5'1" SAM sing 306 n n C5' "H5'2" SAM sing 307 n n C4' O4' SAM sing 308 n n C4' C3' SAM sing 309 n n C4' H4' SAM sing 310 n n O4' C1' SAM sing 311 n n C3' O3' SAM sing 312 n n C3' C2' SAM sing 313 n n C3' H3' SAM sing 314 n n O3' HO3' SAM sing 315 n n C2' O2' SAM sing 316 n n C2' C1' SAM sing 317 n n C2' H2' SAM sing 318 n n O2' HO2' SAM sing 319 n n C1' N9 SAM sing 320 n n C1' H1' SAM sing 321 n n N9 C8 SAM sing 322 n y N9 C4 SAM sing 323 n y C8 N7 SAM doub 324 n y C8 H8 SAM sing 325 n n N7 C5 SAM sing 326 n y C5 C6 SAM sing 327 n y C5 C4 SAM doub 328 n y C6 N6 SAM sing 329 n n C6 N1 SAM doub 330 n y N6 HN61 SAM sing 331 n n N6 HN62 SAM sing 332 n n N1 C2 SAM sing 333 n y C2 N3 SAM doub 334 n y C2 H2 SAM sing 335 n n N3 C4 SAM sing 336 n y # _atom_sites.entry_id 5HIK _atom_sites.fract_transf_matrix[1][1] 0.019266 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008267 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007588 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 301 1 SAM SAM . C 3 EDO A 1 302 1 EDO EDO . D 3 EDO A 1 303 2 EDO EDO . E 3 EDO A 1 304 3 EDO EDO . F 3 EDO A 1 305 4 EDO EDO . G 4 HOH A 1 401 70 HOH HOH . G 4 HOH A 2 402 13 HOH HOH . G 4 HOH A 3 403 69 HOH HOH . G 4 HOH A 4 404 8 HOH HOH . G 4 HOH A 5 405 6 HOH HOH . G 4 HOH A 6 406 32 HOH HOH . G 4 HOH A 7 407 58 HOH HOH . G 4 HOH A 8 408 4 HOH HOH . G 4 HOH A 9 409 3 HOH HOH . G 4 HOH A 10 410 12 HOH HOH . G 4 HOH A 11 411 19 HOH HOH . G 4 HOH A 12 412 22 HOH HOH . G 4 HOH A 13 413 2 HOH HOH . G 4 HOH A 14 414 29 HOH HOH . G 4 HOH A 15 415 41 HOH HOH . G 4 HOH A 16 416 37 HOH HOH . G 4 HOH A 17 417 11 HOH HOH . G 4 HOH A 18 418 24 HOH HOH . G 4 HOH A 19 419 7 HOH HOH . G 4 HOH A 20 420 10 HOH HOH . G 4 HOH A 21 421 59 HOH HOH . G 4 HOH A 22 422 39 HOH HOH . G 4 HOH A 23 423 5 HOH HOH . G 4 HOH A 24 424 20 HOH HOH . G 4 HOH A 25 425 33 HOH HOH . G 4 HOH A 26 426 34 HOH HOH . G 4 HOH A 27 427 1 HOH HOH . G 4 HOH A 28 428 15 HOH HOH . G 4 HOH A 29 429 27 HOH HOH . G 4 HOH A 30 430 49 HOH HOH . G 4 HOH A 31 431 9 HOH HOH . G 4 HOH A 32 432 23 HOH HOH . G 4 HOH A 33 433 21 HOH HOH . G 4 HOH A 34 434 47 HOH HOH . G 4 HOH A 35 435 46 HOH HOH . G 4 HOH A 36 436 54 HOH HOH . G 4 HOH A 37 437 45 HOH HOH . G 4 HOH A 38 438 28 HOH HOH . G 4 HOH A 39 439 26 HOH HOH . G 4 HOH A 40 440 53 HOH HOH . G 4 HOH A 41 441 17 HOH HOH . G 4 HOH A 42 442 50 HOH HOH . G 4 HOH A 43 443 71 HOH HOH . G 4 HOH A 44 444 14 HOH HOH . G 4 HOH A 45 445 63 HOH HOH . G 4 HOH A 46 446 35 HOH HOH . G 4 HOH A 47 447 30 HOH HOH . G 4 HOH A 48 448 18 HOH HOH . G 4 HOH A 49 449 16 HOH HOH . G 4 HOH A 50 450 66 HOH HOH . G 4 HOH A 51 451 38 HOH HOH . G 4 HOH A 52 452 73 HOH HOH . G 4 HOH A 53 453 51 HOH HOH . G 4 HOH A 54 454 67 HOH HOH . G 4 HOH A 55 455 48 HOH HOH . G 4 HOH A 56 456 25 HOH HOH . G 4 HOH A 57 457 61 HOH HOH . G 4 HOH A 58 458 55 HOH HOH . G 4 HOH A 59 459 62 HOH HOH . G 4 HOH A 60 460 52 HOH HOH . G 4 HOH A 61 461 36 HOH HOH . G 4 HOH A 62 462 68 HOH HOH . G 4 HOH A 63 463 31 HOH HOH . G 4 HOH A 64 464 44 HOH HOH . G 4 HOH A 65 465 64 HOH HOH . G 4 HOH A 66 466 60 HOH HOH . G 4 HOH A 67 467 43 HOH HOH . G 4 HOH A 68 468 72 HOH HOH . G 4 HOH A 69 469 40 HOH HOH . G 4 HOH A 70 470 42 HOH HOH . G 4 HOH A 71 471 56 HOH HOH . G 4 HOH A 72 472 65 HOH HOH . G 4 HOH A 73 473 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 -5.387 -15.947 -21.782 1 44.32 ? N SAM 301 A 1 HETATM 2 C CA SAM . . . B 2 -5.121 -15.688 -23.232 1 53.84 ? CA SAM 301 A 1 HETATM 3 C C SAM . . . B 2 -6.19 -16.308 -24.121 1 60.87 ? C SAM 301 A 1 HETATM 4 O O SAM . . . B 2 -6.284 -15.934 -25.3 1 60.98 ? O SAM 301 A 1 HETATM 5 O OXT SAM . . . B 2 -6.956 -17.175 -23.672 1 50.56 ? OXT SAM 301 A 1 HETATM 6 C CB SAM . . . B 2 -3.741 -16.166 -23.689 1 45.75 ? CB SAM 301 A 1 HETATM 7 C CG SAM . . . B 2 -3.165 -17.365 -22.95 1 44.1 ? CG SAM 301 A 1 HETATM 8 S SD SAM . . . B 2 -1.526 -17.896 -23.517 1 86.18 ? SD SAM 301 A 1 HETATM 9 C CE SAM . . . B 2 -1.884 -19.675 -23.688 1 43.39 ? CE SAM 301 A 1 HETATM 10 C C5' SAM . . . B 2 -0.555 -17.941 -21.977 1 47.02 ? C5' SAM 301 A 1 HETATM 11 C C4' SAM . . . B 2 0.206 -16.666 -21.591 1 37.71 ? C4' SAM 301 A 1 HETATM 12 O O4' SAM . . . B 2 0.803 -16.858 -20.326 1 47.86 ? O4' SAM 301 A 1 HETATM 13 C C3' SAM . . . B 2 1.339 -16.29 -22.54 1 34.96 ? C3' SAM 301 A 1 HETATM 14 O O3' SAM . . . B 2 1.068 -15.004 -23.047 1 35.69 ? O3' SAM 301 A 1 HETATM 15 C C2' SAM . . . B 2 2.614 -16.262 -21.707 1 38.93 ? C2' SAM 301 A 1 HETATM 16 O O2' SAM . . . B 2 3.398 -15.116 -21.992 1 30.57 ? O2' SAM 301 A 1 HETATM 17 C C1' SAM . . . B 2 2.073 -16.233 -20.282 1 47.77 ? C1' SAM 301 A 1 HETATM 18 N N9 SAM . . . B 2 2.931 -16.901 -19.283 1 45.69 ? N9 SAM 301 A 1 HETATM 19 C C8 SAM . . . B 2 3.405 -18.191 -19.303 1 42.95 ? C8 SAM 301 A 1 HETATM 20 N N7 SAM . . . B 2 4.144 -18.394 -18.185 1 40.28 ? N7 SAM 301 A 1 HETATM 21 C C5 SAM . . . B 2 4.148 -17.246 -17.453 1 41.16 ? C5 SAM 301 A 1 HETATM 22 C C6 SAM . . . B 2 4.735 -16.889 -16.242 1 34.08 ? C6 SAM 301 A 1 HETATM 23 N N6 SAM . . . B 2 5.478 -17.758 -15.571 1 31.93 ? N6 SAM 301 A 1 HETATM 24 N N1 SAM . . . B 2 4.558 -15.621 -15.737 1 40.33 ? N1 SAM 301 A 1 HETATM 25 C C2 SAM . . . B 2 3.8 -14.698 -16.428 1 34.33 ? C2 SAM 301 A 1 HETATM 26 N N3 SAM . . . B 2 3.216 -15.054 -17.622 1 34.8 ? N3 SAM 301 A 1 HETATM 27 C C4 SAM . . . B 2 3.387 -16.304 -18.129 1 41.53 ? C4 SAM 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #