data_5HIL # _model_server_result.job_id lmuQGtgmhWYVbRz7fs3Q1g _model_server_result.datetime_utc '2024-12-01 21:05:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hil # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5HIL # _exptl.entry_id 5HIL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HIL _cell.length_a 51.897 _cell.length_b 121.124 _cell.length_c 131.589 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HIL _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 286 n n N HN1 SAH sing 287 n n N HN2 SAH sing 288 n n CA CB SAH sing 289 n n CA C SAH sing 290 n n CA HA SAH sing 291 n n CB CG SAH sing 292 n n CB HB1 SAH sing 293 n n CB HB2 SAH sing 294 n n CG SD SAH sing 295 n n CG HG1 SAH sing 296 n n CG HG2 SAH sing 297 n n SD C5' SAH sing 298 n n C O SAH doub 299 n n C OXT SAH sing 300 n n OXT HXT SAH sing 301 n n C5' C4' SAH sing 302 n n C5' "H5'1" SAH sing 303 n n C5' "H5'2" SAH sing 304 n n C4' O4' SAH sing 305 n n C4' C3' SAH sing 306 n n C4' H4' SAH sing 307 n n O4' C1' SAH sing 308 n n C3' O3' SAH sing 309 n n C3' C2' SAH sing 310 n n C3' H3' SAH sing 311 n n O3' HO3' SAH sing 312 n n C2' O2' SAH sing 313 n n C2' C1' SAH sing 314 n n C2' H2' SAH sing 315 n n O2' HO2' SAH sing 316 n n C1' N9 SAH sing 317 n n C1' H1' SAH sing 318 n n N9 C8 SAH sing 319 n y N9 C4 SAH sing 320 n y C8 N7 SAH doub 321 n y C8 H8 SAH sing 322 n n N7 C5 SAH sing 323 n y C5 C6 SAH sing 324 n y C5 C4 SAH doub 325 n y C6 N6 SAH sing 326 n n C6 N1 SAH doub 327 n y N6 HN61 SAH sing 328 n n N6 HN62 SAH sing 329 n n N1 C2 SAH sing 330 n y C2 N3 SAH doub 331 n y C2 H2 SAH sing 332 n n N3 C4 SAH sing 333 n y # _atom_sites.entry_id 5HIL _atom_sites.fract_transf_matrix[1][1] 0.019269 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 1 SAH SAH . C 3 SAR A 1 302 1 SAR SAR . D 4 EDO A 1 303 1 EDO EDO . E 4 EDO A 1 304 2 EDO EDO . F 4 EDO A 1 305 3 EDO EDO . G 4 EDO A 1 306 4 EDO EDO . H 4 EDO A 1 307 5 EDO EDO . I 5 HOH A 1 401 17 HOH HOH . I 5 HOH A 2 402 16 HOH HOH . I 5 HOH A 3 403 15 HOH HOH . I 5 HOH A 4 404 5 HOH HOH . I 5 HOH A 5 405 11 HOH HOH . I 5 HOH A 6 406 2 HOH HOH . I 5 HOH A 7 407 37 HOH HOH . I 5 HOH A 8 408 35 HOH HOH . I 5 HOH A 9 409 7 HOH HOH . I 5 HOH A 10 410 8 HOH HOH . I 5 HOH A 11 411 12 HOH HOH . I 5 HOH A 12 412 18 HOH HOH . I 5 HOH A 13 413 14 HOH HOH . I 5 HOH A 14 414 43 HOH HOH . I 5 HOH A 15 415 19 HOH HOH . I 5 HOH A 16 416 27 HOH HOH . I 5 HOH A 17 417 21 HOH HOH . I 5 HOH A 18 418 32 HOH HOH . I 5 HOH A 19 419 20 HOH HOH . I 5 HOH A 20 420 9 HOH HOH . I 5 HOH A 21 421 28 HOH HOH . I 5 HOH A 22 422 24 HOH HOH . I 5 HOH A 23 423 1 HOH HOH . I 5 HOH A 24 424 22 HOH HOH . I 5 HOH A 25 425 13 HOH HOH . I 5 HOH A 26 426 10 HOH HOH . I 5 HOH A 27 427 25 HOH HOH . I 5 HOH A 28 428 33 HOH HOH . I 5 HOH A 29 429 3 HOH HOH . I 5 HOH A 30 430 6 HOH HOH . I 5 HOH A 31 431 23 HOH HOH . I 5 HOH A 32 432 42 HOH HOH . I 5 HOH A 33 433 50 HOH HOH . I 5 HOH A 34 434 44 HOH HOH . I 5 HOH A 35 435 31 HOH HOH . I 5 HOH A 36 436 38 HOH HOH . I 5 HOH A 37 437 30 HOH HOH . I 5 HOH A 38 438 41 HOH HOH . I 5 HOH A 39 439 40 HOH HOH . I 5 HOH A 40 440 4 HOH HOH . I 5 HOH A 41 441 49 HOH HOH . I 5 HOH A 42 442 26 HOH HOH . I 5 HOH A 43 443 34 HOH HOH . I 5 HOH A 44 444 53 HOH HOH . I 5 HOH A 45 445 45 HOH HOH . I 5 HOH A 46 446 29 HOH HOH . I 5 HOH A 47 447 39 HOH HOH . I 5 HOH A 48 448 54 HOH HOH . I 5 HOH A 49 449 55 HOH HOH . I 5 HOH A 50 450 57 HOH HOH . I 5 HOH A 51 451 58 HOH HOH . I 5 HOH A 52 452 51 HOH HOH . I 5 HOH A 53 453 46 HOH HOH . I 5 HOH A 54 454 56 HOH HOH . I 5 HOH A 55 455 36 HOH HOH . I 5 HOH A 56 456 59 HOH HOH . I 5 HOH A 57 457 52 HOH HOH . I 5 HOH A 58 458 47 HOH HOH . I 5 HOH A 59 459 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 57.297 44.464 153.424 1 44.16 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . B 2 57.071 44.833 154.79 1 50.74 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . B 2 55.697 44.479 155.314 1 45.34 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . B 2 55.066 43.391 154.513 1 37.12 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . B 2 53.429 42.971 155.128 1 51.25 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . B 2 58.113 44.164 155.669 1 52.58 ? C SAH 301 A 1 HETATM 7 O O SAH . . . B 2 58.878 43.297 155.15 1 54.77 -1 O SAH 301 A 1 HETATM 8 O OXT SAH . . . B 2 58.193 44.492 156.921 1 43.41 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . B 2 52.372 42.597 153.72 1 42.25 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . B 2 51.683 43.866 153.253 1 39.36 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . B 2 51.143 43.727 151.925 1 46.02 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . B 2 50.556 44.286 154.154 1 37.12 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . B 2 50.904 45.506 154.778 1 41.48 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . B 2 49.304 44.351 153.312 1 44.06 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . B 2 48.434 45.403 153.595 1 38.84 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . B 2 49.877 44.348 151.896 1 51.92 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . B 2 49.017 43.717 150.872 1 53.86 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . B 2 48.548 42.448 150.872 1 50.81 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . B 2 47.816 42.222 149.778 1 49.42 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . B 2 47.786 43.345 149.01 1 49.81 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . B 2 47.206 43.693 147.793 1 41.39 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . B 2 46.464 42.811 147.109 1 35.67 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . B 2 47.384 44.952 147.297 1 42.11 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . B 2 48.118 45.875 147.96 1 41.28 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . B 2 48.703 45.575 149.135 1 37.34 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . B 2 48.557 44.327 149.686 1 49.6 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #