data_5HIM # _model_server_result.job_id 3NyA_CbuVxay1DPe8FUGPA _model_server_result.datetime_utc '2024-10-28 14:28:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5him # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5HIM # _exptl.entry_id 5HIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 103.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N,N-DIMETHYLGLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HIM _cell.length_a 51.975 _cell.length_b 121.219 _cell.length_c 131.686 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H9 N O2' _chem_comp.formula_weight 103.12 _chem_comp.id DMG _chem_comp.mon_nstd_flag . _chem_comp.name N,N-DIMETHYLGLYCINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DIMETHYLGLYCINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OXT C DMG sing 83 n n OXT HXT DMG sing 84 n n O C DMG doub 85 n n C CA DMG sing 86 n n CA N DMG sing 87 n n CA HA3 DMG sing 88 n n CA HA2 DMG sing 89 n n N C4 DMG sing 90 n n N C5 DMG sing 91 n n C4 H41 DMG sing 92 n n C4 H42 DMG sing 93 n n C4 H43 DMG sing 94 n n C5 H51 DMG sing 95 n n C5 H52 DMG sing 96 n n C5 H53 DMG sing 97 n n # _atom_sites.entry_id 5HIM _atom_sites.fract_transf_matrix[1][1] 0.01924 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 1 SAH SAH . C 3 DMG A 1 302 1 DMG DMG . D 4 EDO A 1 303 1 EDO EDO . E 4 EDO A 1 304 2 EDO EDO . F 4 EDO A 1 305 3 EDO EDO . G 4 EDO A 1 306 4 EDO EDO . H 4 EDO A 1 307 5 EDO EDO . I 4 EDO A 1 308 6 EDO EDO . J 5 HOH A 1 401 12 HOH HOH . J 5 HOH A 2 402 24 HOH HOH . J 5 HOH A 3 403 44 HOH HOH . J 5 HOH A 4 404 47 HOH HOH . J 5 HOH A 5 405 62 HOH HOH . J 5 HOH A 6 406 15 HOH HOH . J 5 HOH A 7 407 77 HOH HOH . J 5 HOH A 8 408 14 HOH HOH . J 5 HOH A 9 409 61 HOH HOH . J 5 HOH A 10 410 30 HOH HOH . J 5 HOH A 11 411 28 HOH HOH . J 5 HOH A 12 412 2 HOH HOH . J 5 HOH A 13 413 22 HOH HOH . J 5 HOH A 14 414 20 HOH HOH . J 5 HOH A 15 415 58 HOH HOH . J 5 HOH A 16 416 9 HOH HOH . J 5 HOH A 17 417 57 HOH HOH . J 5 HOH A 18 418 37 HOH HOH . J 5 HOH A 19 419 54 HOH HOH . J 5 HOH A 20 420 38 HOH HOH . J 5 HOH A 21 421 25 HOH HOH . J 5 HOH A 22 422 5 HOH HOH . J 5 HOH A 23 423 69 HOH HOH . J 5 HOH A 24 424 8 HOH HOH . J 5 HOH A 25 425 35 HOH HOH . J 5 HOH A 26 426 3 HOH HOH . J 5 HOH A 27 427 1 HOH HOH . J 5 HOH A 28 428 17 HOH HOH . J 5 HOH A 29 429 48 HOH HOH . J 5 HOH A 30 430 27 HOH HOH . J 5 HOH A 31 431 11 HOH HOH . J 5 HOH A 32 432 13 HOH HOH . J 5 HOH A 33 433 56 HOH HOH . J 5 HOH A 34 434 7 HOH HOH . J 5 HOH A 35 435 31 HOH HOH . J 5 HOH A 36 436 43 HOH HOH . J 5 HOH A 37 437 29 HOH HOH . J 5 HOH A 38 438 10 HOH HOH . J 5 HOH A 39 439 46 HOH HOH . J 5 HOH A 40 440 53 HOH HOH . J 5 HOH A 41 441 34 HOH HOH . J 5 HOH A 42 442 16 HOH HOH . J 5 HOH A 43 443 68 HOH HOH . J 5 HOH A 44 444 39 HOH HOH . J 5 HOH A 45 445 55 HOH HOH . J 5 HOH A 46 446 42 HOH HOH . J 5 HOH A 47 447 33 HOH HOH . J 5 HOH A 48 448 26 HOH HOH . J 5 HOH A 49 449 63 HOH HOH . J 5 HOH A 50 450 18 HOH HOH . J 5 HOH A 51 451 23 HOH HOH . J 5 HOH A 52 452 21 HOH HOH . J 5 HOH A 53 453 4 HOH HOH . J 5 HOH A 54 454 72 HOH HOH . J 5 HOH A 55 455 19 HOH HOH . J 5 HOH A 56 456 65 HOH HOH . J 5 HOH A 57 457 45 HOH HOH . J 5 HOH A 58 458 32 HOH HOH . J 5 HOH A 59 459 64 HOH HOH . J 5 HOH A 60 460 50 HOH HOH . J 5 HOH A 61 461 67 HOH HOH . J 5 HOH A 62 462 74 HOH HOH . J 5 HOH A 63 463 40 HOH HOH . J 5 HOH A 64 464 52 HOH HOH . J 5 HOH A 65 465 66 HOH HOH . J 5 HOH A 66 466 70 HOH HOH . J 5 HOH A 67 467 78 HOH HOH . J 5 HOH A 68 468 71 HOH HOH . J 5 HOH A 69 469 41 HOH HOH . J 5 HOH A 70 470 59 HOH HOH . J 5 HOH A 71 471 73 HOH HOH . J 5 HOH A 72 472 6 HOH HOH . J 5 HOH A 73 473 76 HOH HOH . J 5 HOH A 74 474 75 HOH HOH . J 5 HOH A 75 475 49 HOH HOH . J 5 HOH A 76 476 36 HOH HOH . J 5 HOH A 77 477 51 HOH HOH . J 5 HOH A 78 478 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OXT DMG . . . C 3 -4.182 -25.506 -24.629 1 62.61 ? OXT DMG 302 A 1 HETATM 2 O O DMG . . . C 3 -4.476 -24.692 -26.594 1 68.13 -1 O DMG 302 A 1 HETATM 3 C C DMG . . . C 3 -4.105 -24.526 -25.401 1 67.59 ? C DMG 302 A 1 HETATM 4 C CA DMG . . . C 3 -3.618 -23.196 -24.893 1 75.55 ? CA DMG 302 A 1 HETATM 5 N N DMG . . . C 3 -2.228 -22.915 -24.592 1 78.66 ? N DMG 302 A 1 HETATM 6 C C4 DMG . . . C 3 -1.56 -23.941 -23.84 1 76.88 ? C4 DMG 302 A 1 HETATM 7 C C5 DMG . . . C 3 -1.467 -22.618 -25.772 1 80.12 ? C5 DMG 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #