data_5HIP # _model_server_result.job_id w_aFM5wK-RI62ftd1HbROA _model_server_result.datetime_utc '2024-11-22 05:22:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5HIP # _exptl.entry_id 5HIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.205 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(pyridin-3-yl)benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HIP _cell.length_a 61.342 _cell.length_b 61.342 _cell.length_c 146.989 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 82 1_555 A SG CYS 129 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc1 A NE2 HIS 71 A HIS 69 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc2 A ND1 HIS 73 A HIS 71 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc3 A OD2 ASP 75 A ASP 73 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 A NE2 HIS 76 A HIS 74 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc5 A NE2 HIS 161 A HIS 159 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc6 A OD2 ASP 180 A ASP 178 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc7 A OD2 ASP 180 A ASP 178 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc8 A NE2 HIS 223 A HIS 221 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc9 B FE FE . A FE 401 1_555 D O09 61O . A 61O 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc10 B FE FE . A FE 401 1_555 E O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? metalc ? metalc11 C FE FE . A FE 402 1_555 D O08 61O . A 61O 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc12 C FE FE . A FE 402 1_555 E O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? # _chem_comp.formula 'C12 H9 N O2' _chem_comp.formula_weight 199.205 _chem_comp.id 61O _chem_comp.mon_nstd_flag . _chem_comp.name '2-(pyridin-3-yl)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C06 C05 61O doub 1 n y C06 C01 61O sing 2 n y C05 C04 61O sing 3 n y O08 C07 61O doub 4 n n C01 C02 61O doub 5 n y C04 C07 61O sing 6 n n C04 C03 61O doub 7 n y C07 O09 61O sing 8 n n C02 C03 61O sing 9 n y C03 C10 61O sing 10 n n C10 C15 61O doub 11 n y C10 C11 61O sing 12 n y C15 N14 61O sing 13 n y C11 C12 61O doub 14 n y N14 C13 61O doub 15 n y C12 C13 61O sing 16 n y C13 H131 61O sing 17 n n C15 H151 61O sing 18 n n C01 H011 61O sing 19 n n C02 H021 61O sing 20 n n C05 H051 61O sing 21 n n C06 H061 61O sing 22 n n O09 H1 61O sing 23 n n C11 H111 61O sing 24 n n C12 H121 61O sing 25 n n # _atom_sites.entry_id 5HIP _atom_sites.fract_transf_matrix[1][1] 0.016302 _atom_sites.fract_transf_matrix[1][2] 0.009412 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 401 998 FE FE . C 2 FE A 1 402 999 FE FE . D 3 61O A 1 403 1 61O LIG . E 4 HOH A 1 501 112 HOH HOH . E 4 HOH A 2 502 166 HOH HOH . E 4 HOH A 3 503 162 HOH HOH . E 4 HOH A 4 504 177 HOH HOH . E 4 HOH A 5 505 110 HOH HOH . E 4 HOH A 6 506 152 HOH HOH . E 4 HOH A 7 507 154 HOH HOH . E 4 HOH A 8 508 144 HOH HOH . E 4 HOH A 9 509 180 HOH HOH . E 4 HOH A 10 510 64 HOH HOH . E 4 HOH A 11 511 88 HOH HOH . E 4 HOH A 12 512 91 HOH HOH . E 4 HOH A 13 513 115 HOH HOH . E 4 HOH A 14 514 23 HOH HOH . E 4 HOH A 15 515 58 HOH HOH . E 4 HOH A 16 516 164 HOH HOH . E 4 HOH A 17 517 138 HOH HOH . E 4 HOH A 18 518 165 HOH HOH . E 4 HOH A 19 519 169 HOH HOH . E 4 HOH A 20 520 71 HOH HOH . E 4 HOH A 21 521 171 HOH HOH . E 4 HOH A 22 522 46 HOH HOH . E 4 HOH A 23 523 163 HOH HOH . E 4 HOH A 24 524 140 HOH HOH . E 4 HOH A 25 525 39 HOH HOH . E 4 HOH A 26 526 62 HOH HOH . E 4 HOH A 27 527 57 HOH HOH . E 4 HOH A 28 528 126 HOH HOH . E 4 HOH A 29 529 87 HOH HOH . E 4 HOH A 30 530 131 HOH HOH . E 4 HOH A 31 531 36 HOH HOH . E 4 HOH A 32 532 53 HOH HOH . E 4 HOH A 33 533 27 HOH HOH . E 4 HOH A 34 534 51 HOH HOH . E 4 HOH A 35 535 31 HOH HOH . E 4 HOH A 36 536 69 HOH HOH . E 4 HOH A 37 537 81 HOH HOH . E 4 HOH A 38 538 139 HOH HOH . E 4 HOH A 39 539 111 HOH HOH . E 4 HOH A 40 540 19 HOH HOH . E 4 HOH A 41 541 79 HOH HOH . E 4 HOH A 42 542 178 HOH HOH . E 4 HOH A 43 543 33 HOH HOH . E 4 HOH A 44 544 117 HOH HOH . E 4 HOH A 45 545 17 HOH HOH . E 4 HOH A 46 546 122 HOH HOH . E 4 HOH A 47 547 13 HOH HOH . E 4 HOH A 48 548 90 HOH HOH . E 4 HOH A 49 549 12 HOH HOH . E 4 HOH A 50 550 5 HOH HOH . E 4 HOH A 51 551 123 HOH HOH . E 4 HOH A 52 552 63 HOH HOH . E 4 HOH A 53 553 45 HOH HOH . E 4 HOH A 54 554 176 HOH HOH . E 4 HOH A 55 555 143 HOH HOH . E 4 HOH A 56 556 77 HOH HOH . E 4 HOH A 57 557 125 HOH HOH . E 4 HOH A 58 558 97 HOH HOH . E 4 HOH A 59 559 11 HOH HOH . E 4 HOH A 60 560 89 HOH HOH . E 4 HOH A 61 561 29 HOH HOH . E 4 HOH A 62 562 8 HOH HOH . E 4 HOH A 63 563 121 HOH HOH . E 4 HOH A 64 564 160 HOH HOH . E 4 HOH A 65 565 15 HOH HOH . E 4 HOH A 66 566 137 HOH HOH . E 4 HOH A 67 567 83 HOH HOH . E 4 HOH A 68 568 47 HOH HOH . E 4 HOH A 69 569 6 HOH HOH . E 4 HOH A 70 570 7 HOH HOH . E 4 HOH A 71 571 80 HOH HOH . E 4 HOH A 72 572 94 HOH HOH . E 4 HOH A 73 573 50 HOH HOH . E 4 HOH A 74 574 74 HOH HOH . E 4 HOH A 75 575 153 HOH HOH . E 4 HOH A 76 576 134 HOH HOH . E 4 HOH A 77 577 93 HOH HOH . E 4 HOH A 78 578 106 HOH HOH . E 4 HOH A 79 579 146 HOH HOH . E 4 HOH A 80 580 55 HOH HOH . E 4 HOH A 81 581 82 HOH HOH . E 4 HOH A 82 582 101 HOH HOH . E 4 HOH A 83 583 48 HOH HOH . E 4 HOH A 84 584 34 HOH HOH . E 4 HOH A 85 585 105 HOH HOH . E 4 HOH A 86 586 22 HOH HOH . E 4 HOH A 87 587 161 HOH HOH . E 4 HOH A 88 588 9 HOH HOH . E 4 HOH A 89 589 75 HOH HOH . E 4 HOH A 90 590 173 HOH HOH . E 4 HOH A 91 591 70 HOH HOH . E 4 HOH A 92 592 10 HOH HOH . E 4 HOH A 93 593 21 HOH HOH . E 4 HOH A 94 594 49 HOH HOH . E 4 HOH A 95 595 72 HOH HOH . E 4 HOH A 96 596 136 HOH HOH . E 4 HOH A 97 597 4 HOH HOH . E 4 HOH A 98 598 78 HOH HOH . E 4 HOH A 99 599 44 HOH HOH . E 4 HOH A 100 600 20 HOH HOH . E 4 HOH A 101 601 95 HOH HOH . E 4 HOH A 102 602 103 HOH HOH . E 4 HOH A 103 603 18 HOH HOH . E 4 HOH A 104 604 99 HOH HOH . E 4 HOH A 105 605 104 HOH HOH . E 4 HOH A 106 606 1 HOH HOH . E 4 HOH A 107 607 159 HOH HOH . E 4 HOH A 108 608 35 HOH HOH . E 4 HOH A 109 609 60 HOH HOH . E 4 HOH A 110 610 59 HOH HOH . E 4 HOH A 111 611 42 HOH HOH . E 4 HOH A 112 612 109 HOH HOH . E 4 HOH A 113 613 40 HOH HOH . E 4 HOH A 114 614 43 HOH HOH . E 4 HOH A 115 615 30 HOH HOH . E 4 HOH A 116 616 92 HOH HOH . E 4 HOH A 117 617 120 HOH HOH . E 4 HOH A 118 618 107 HOH HOH . E 4 HOH A 119 619 76 HOH HOH . E 4 HOH A 120 620 37 HOH HOH . E 4 HOH A 121 621 151 HOH HOH . E 4 HOH A 122 622 128 HOH HOH . E 4 HOH A 123 623 116 HOH HOH . E 4 HOH A 124 624 3 HOH HOH . E 4 HOH A 125 625 54 HOH HOH . E 4 HOH A 126 626 16 HOH HOH . E 4 HOH A 127 627 113 HOH HOH . E 4 HOH A 128 628 41 HOH HOH . E 4 HOH A 129 629 119 HOH HOH . E 4 HOH A 130 630 28 HOH HOH . E 4 HOH A 131 631 156 HOH HOH . E 4 HOH A 132 632 96 HOH HOH . E 4 HOH A 133 633 167 HOH HOH . E 4 HOH A 134 634 38 HOH HOH . E 4 HOH A 135 635 135 HOH HOH . E 4 HOH A 136 636 2 HOH HOH . E 4 HOH A 137 637 150 HOH HOH . E 4 HOH A 138 638 14 HOH HOH . E 4 HOH A 139 639 85 HOH HOH . E 4 HOH A 140 640 158 HOH HOH . E 4 HOH A 141 641 184 HOH HOH . E 4 HOH A 142 642 102 HOH HOH . E 4 HOH A 143 643 168 HOH HOH . E 4 HOH A 144 644 24 HOH HOH . E 4 HOH A 145 645 100 HOH HOH . E 4 HOH A 146 646 124 HOH HOH . E 4 HOH A 147 647 147 HOH HOH . E 4 HOH A 148 648 185 HOH HOH . E 4 HOH A 149 649 26 HOH HOH . E 4 HOH A 150 650 174 HOH HOH . E 4 HOH A 151 651 157 HOH HOH . E 4 HOH A 152 652 149 HOH HOH . E 4 HOH A 153 653 155 HOH HOH . E 4 HOH A 154 654 52 HOH HOH . E 4 HOH A 155 655 145 HOH HOH . E 4 HOH A 156 656 66 HOH HOH . E 4 HOH A 157 657 65 HOH HOH . E 4 HOH A 158 658 114 HOH HOH . E 4 HOH A 159 659 25 HOH HOH . E 4 HOH A 160 660 56 HOH HOH . E 4 HOH A 161 661 148 HOH HOH . E 4 HOH A 162 662 73 HOH HOH . E 4 HOH A 163 663 142 HOH HOH . E 4 HOH A 164 664 61 HOH HOH . E 4 HOH A 165 665 68 HOH HOH . E 4 HOH A 166 666 129 HOH HOH . E 4 HOH A 167 667 84 HOH HOH . E 4 HOH A 168 668 108 HOH HOH . E 4 HOH A 169 669 130 HOH HOH . E 4 HOH A 170 670 32 HOH HOH . E 4 HOH A 171 671 127 HOH HOH . E 4 HOH A 172 672 98 HOH HOH . E 4 HOH A 173 673 170 HOH HOH . E 4 HOH A 174 674 118 HOH HOH . E 4 HOH A 175 675 67 HOH HOH . E 4 HOH A 176 676 86 HOH HOH . E 4 HOH A 177 677 132 HOH HOH . E 4 HOH A 178 678 172 HOH HOH . E 4 HOH A 179 679 183 HOH HOH . E 4 HOH A 180 680 181 HOH HOH . E 4 HOH A 181 681 141 HOH HOH . E 4 HOH A 182 682 179 HOH HOH . E 4 HOH A 183 683 175 HOH HOH . E 4 HOH A 184 684 133 HOH HOH . E 4 HOH A 185 685 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 61O . . . D 3 -17.757 2.483 -9.207 0.85 32.13 ? C10 61O 403 A 1 HETATM 2 C C13 61O . . . D 3 -18.761 1.694 -6.716 0.85 32.13 ? C13 61O 403 A 1 HETATM 3 C C15 61O . . . D 3 -19.018 1.91 -9.051 0.85 32.13 ? C15 61O 403 A 1 HETATM 4 C C01 61O . . . D 3 -16.17 4.584 -11.819 0.85 32.13 ? C01 61O 403 A 1 HETATM 5 C C02 61O . . . D 3 -16.675 4.137 -10.6 0.85 32.13 ? C02 61O 403 A 1 HETATM 6 C C03 61O . . . D 3 -17.273 2.892 -10.472 0.85 32.13 ? C03 61O 403 A 1 HETATM 7 C C04 61O . . . D 3 -17.365 2.104 -11.64 0.85 32.13 ? C04 61O 403 A 1 HETATM 8 C C05 61O . . . D 3 -16.875 2.567 -12.854 0.85 32.13 ? C05 61O 403 A 1 HETATM 9 C C06 61O . . . D 3 -16.261 3.802 -12.964 0.85 32.13 ? C06 61O 403 A 1 HETATM 10 C C07 61O . . . D 3 -17.94 0.704 -11.582 0.85 32.13 ? C07 61O 403 A 1 HETATM 11 O O08 61O . . . D 3 -18.814 0.251 -12.386 0.85 32.13 ? O08 61O 403 A 1 HETATM 12 O O09 61O . . . D 3 -17.453 -0.043 -10.648 0.85 32.13 -1 O09 61O 403 A 1 HETATM 13 C C11 61O . . . D 3 -17.019 2.684 -8.025 0.85 32.13 ? C11 61O 403 A 1 HETATM 14 C C12 61O . . . D 3 -17.51 2.28 -6.794 0.85 32.13 ? C12 61O 403 A 1 HETATM 15 N N14 61O . . . D 3 -19.493 1.53 -7.845 0.85 32.13 ? N14 61O 403 A 1 HETATM 16 H H131 61O . . . D 3 -19.122 1.42 -5.851 0.85 38.56 ? H131 61O 403 A 1 HETATM 17 H H151 61O . . . D 3 -19.57 1.762 -9.842 0.85 38.56 ? H151 61O 403 A 1 HETATM 18 H H011 61O . . . D 3 -15.779 5.477 -11.877 0.85 38.56 ? H011 61O 403 A 1 HETATM 19 H H021 61O . . . D 3 -16.608 4.715 -9.817 0.85 38.56 ? H021 61O 403 A 1 HETATM 20 H H051 61O . . . D 3 -16.918 1.986 -13.638 0.85 38.56 ? H051 61O 403 A 1 HETATM 21 H H061 61O . . . D 3 -15.922 4.122 -13.821 0.85 38.56 ? H061 61O 403 A 1 HETATM 22 H H111 61O . . . D 3 -16.129 3.083 -8.078 0.85 38.56 ? H111 61O 403 A 1 HETATM 23 H H121 61O . . . D 3 -16.979 2.412 -5.986 0.85 38.56 ? H121 61O 403 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 23 #