data_5HJ7 # _model_server_result.job_id CStObcj8TuUDv0C_B77yTA _model_server_result.datetime_utc '2024-12-21 11:35:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5HJ7 # _exptl.entry_id 5HJ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'D-GLUTAMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HJ7 _cell.length_a 95.796 _cell.length_b 95.796 _cell.length_c 61.736 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HJ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id DGL _chem_comp.mon_nstd_flag . _chem_comp.name 'D-GLUTAMIC ACID' _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DGL sing 83 n n N H DGL sing 84 n n N H2 DGL sing 85 n n CA C DGL sing 86 n n CA CB DGL sing 87 n n CA HA DGL sing 88 n n C O DGL doub 89 n n C OXT DGL sing 90 n n CB CG DGL sing 91 n n CB HB2 DGL sing 92 n n CB HB3 DGL sing 93 n n CG CD DGL sing 94 n n CG HG2 DGL sing 95 n n CG HG3 DGL sing 96 n n CD OE1 DGL doub 97 n n CD OE2 DGL sing 98 n n OE2 HE2 DGL sing 99 n n OXT HXT DGL sing 100 n n # _atom_sites.entry_id 5HJ7 _atom_sites.fract_transf_matrix[1][1] 0.010439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DGL A 1 301 2 DGL DGL . D 2 DGL B 1 301 1 DGL DGL . E 3 HOH A 1 401 295 HOH HOH . E 3 HOH A 2 402 120 HOH HOH . E 3 HOH A 3 403 2 HOH HOH . E 3 HOH A 4 404 309 HOH HOH . E 3 HOH A 5 405 29 HOH HOH . E 3 HOH A 6 406 238 HOH HOH . E 3 HOH A 7 407 250 HOH HOH . E 3 HOH A 8 408 162 HOH HOH . E 3 HOH A 9 409 265 HOH HOH . E 3 HOH A 10 410 19 HOH HOH . E 3 HOH A 11 411 297 HOH HOH . E 3 HOH A 12 412 124 HOH HOH . E 3 HOH A 13 413 15 HOH HOH . E 3 HOH A 14 414 294 HOH HOH . E 3 HOH A 15 415 64 HOH HOH . E 3 HOH A 16 416 198 HOH HOH . E 3 HOH A 17 417 246 HOH HOH . E 3 HOH A 18 418 247 HOH HOH . E 3 HOH A 19 419 178 HOH HOH . E 3 HOH A 20 420 86 HOH HOH . E 3 HOH A 21 421 62 HOH HOH . E 3 HOH A 22 422 6 HOH HOH . E 3 HOH A 23 423 239 HOH HOH . E 3 HOH A 24 424 149 HOH HOH . E 3 HOH A 25 425 261 HOH HOH . E 3 HOH A 26 426 172 HOH HOH . E 3 HOH A 27 427 96 HOH HOH . E 3 HOH A 28 428 18 HOH HOH . E 3 HOH A 29 429 43 HOH HOH . E 3 HOH A 30 430 241 HOH HOH . E 3 HOH A 31 431 23 HOH HOH . E 3 HOH A 32 432 10 HOH HOH . E 3 HOH A 33 433 299 HOH HOH . E 3 HOH A 34 434 79 HOH HOH . E 3 HOH A 35 435 233 HOH HOH . E 3 HOH A 36 436 249 HOH HOH . E 3 HOH A 37 437 42 HOH HOH . E 3 HOH A 38 438 168 HOH HOH . E 3 HOH A 39 439 11 HOH HOH . E 3 HOH A 40 440 191 HOH HOH . E 3 HOH A 41 441 262 HOH HOH . E 3 HOH A 42 442 72 HOH HOH . E 3 HOH A 43 443 217 HOH HOH . E 3 HOH A 44 444 209 HOH HOH . E 3 HOH A 45 445 154 HOH HOH . E 3 HOH A 46 446 224 HOH HOH . E 3 HOH A 47 447 60 HOH HOH . E 3 HOH A 48 448 216 HOH HOH . E 3 HOH A 49 449 46 HOH HOH . E 3 HOH A 50 450 170 HOH HOH . E 3 HOH A 51 451 68 HOH HOH . E 3 HOH A 52 452 52 HOH HOH . E 3 HOH A 53 453 235 HOH HOH . E 3 HOH A 54 454 145 HOH HOH . E 3 HOH A 55 455 33 HOH HOH . E 3 HOH A 56 456 88 HOH HOH . E 3 HOH A 57 457 284 HOH HOH . E 3 HOH A 58 458 180 HOH HOH . E 3 HOH A 59 459 219 HOH HOH . E 3 HOH A 60 460 277 HOH HOH . E 3 HOH A 61 461 137 HOH HOH . E 3 HOH A 62 462 112 HOH HOH . E 3 HOH A 63 463 31 HOH HOH . E 3 HOH A 64 464 160 HOH HOH . E 3 HOH A 65 465 39 HOH HOH . E 3 HOH A 66 466 56 HOH HOH . E 3 HOH A 67 467 55 HOH HOH . E 3 HOH A 68 468 92 HOH HOH . E 3 HOH A 69 469 166 HOH HOH . E 3 HOH A 70 470 8 HOH HOH . E 3 HOH A 71 471 245 HOH HOH . E 3 HOH A 72 472 187 HOH HOH . E 3 HOH A 73 473 257 HOH HOH . E 3 HOH A 74 474 131 HOH HOH . E 3 HOH A 75 475 275 HOH HOH . E 3 HOH A 76 476 189 HOH HOH . E 3 HOH A 77 477 271 HOH HOH . E 3 HOH A 78 478 203 HOH HOH . E 3 HOH A 79 479 83 HOH HOH . E 3 HOH A 80 480 37 HOH HOH . E 3 HOH A 81 481 47 HOH HOH . E 3 HOH A 82 482 190 HOH HOH . E 3 HOH A 83 483 192 HOH HOH . E 3 HOH A 84 484 129 HOH HOH . E 3 HOH A 85 485 66 HOH HOH . E 3 HOH A 86 486 140 HOH HOH . E 3 HOH A 87 487 113 HOH HOH . E 3 HOH A 88 488 70 HOH HOH . E 3 HOH A 89 489 118 HOH HOH . E 3 HOH A 90 490 114 HOH HOH . E 3 HOH A 91 491 151 HOH HOH . E 3 HOH A 92 492 102 HOH HOH . E 3 HOH A 93 493 24 HOH HOH . E 3 HOH A 94 494 163 HOH HOH . E 3 HOH A 95 495 215 HOH HOH . E 3 HOH A 96 496 67 HOH HOH . E 3 HOH A 97 497 276 HOH HOH . E 3 HOH A 98 498 100 HOH HOH . E 3 HOH A 99 499 227 HOH HOH . E 3 HOH A 100 500 288 HOH HOH . E 3 HOH A 101 501 134 HOH HOH . E 3 HOH A 102 502 289 HOH HOH . E 3 HOH A 103 503 74 HOH HOH . E 3 HOH A 104 504 48 HOH HOH . E 3 HOH A 105 505 128 HOH HOH . E 3 HOH A 106 506 84 HOH HOH . E 3 HOH A 107 507 205 HOH HOH . E 3 HOH A 108 508 252 HOH HOH . E 3 HOH A 109 509 38 HOH HOH . E 3 HOH A 110 510 270 HOH HOH . E 3 HOH A 111 511 103 HOH HOH . E 3 HOH A 112 512 167 HOH HOH . E 3 HOH A 113 513 89 HOH HOH . E 3 HOH A 114 514 69 HOH HOH . E 3 HOH A 115 515 143 HOH HOH . E 3 HOH A 116 516 49 HOH HOH . E 3 HOH A 117 517 181 HOH HOH . E 3 HOH A 118 518 281 HOH HOH . E 3 HOH A 119 519 199 HOH HOH . E 3 HOH A 120 520 266 HOH HOH . E 3 HOH A 121 521 182 HOH HOH . E 3 HOH A 122 522 185 HOH HOH . E 3 HOH A 123 523 202 HOH HOH . E 3 HOH A 124 524 117 HOH HOH . E 3 HOH A 125 525 94 HOH HOH . E 3 HOH A 126 526 22 HOH HOH . E 3 HOH A 127 527 206 HOH HOH . E 3 HOH A 128 528 91 HOH HOH . E 3 HOH A 129 529 214 HOH HOH . E 3 HOH A 130 530 130 HOH HOH . E 3 HOH A 131 531 201 HOH HOH . E 3 HOH A 132 532 310 HOH HOH . E 3 HOH A 133 533 243 HOH HOH . E 3 HOH A 134 534 200 HOH HOH . E 3 HOH A 135 535 210 HOH HOH . E 3 HOH A 136 536 285 HOH HOH . E 3 HOH A 137 537 292 HOH HOH . E 3 HOH A 138 538 183 HOH HOH . E 3 HOH A 139 539 197 HOH HOH . E 3 HOH A 140 540 95 HOH HOH . E 3 HOH A 141 541 290 HOH HOH . E 3 HOH A 142 542 207 HOH HOH . E 3 HOH A 143 543 123 HOH HOH . E 3 HOH A 144 544 196 HOH HOH . E 3 HOH A 145 545 269 HOH HOH . E 3 HOH A 146 546 161 HOH HOH . F 3 HOH B 1 401 283 HOH HOH . F 3 HOH B 2 402 306 HOH HOH . F 3 HOH B 3 403 3 HOH HOH . F 3 HOH B 4 404 159 HOH HOH . F 3 HOH B 5 405 58 HOH HOH . F 3 HOH B 6 406 57 HOH HOH . F 3 HOH B 7 407 14 HOH HOH . F 3 HOH B 8 408 204 HOH HOH . F 3 HOH B 9 409 28 HOH HOH . F 3 HOH B 10 410 122 HOH HOH . F 3 HOH B 11 411 279 HOH HOH . F 3 HOH B 12 412 267 HOH HOH . F 3 HOH B 13 413 272 HOH HOH . F 3 HOH B 14 414 304 HOH HOH . F 3 HOH B 15 415 13 HOH HOH . F 3 HOH B 16 416 248 HOH HOH . F 3 HOH B 17 417 218 HOH HOH . F 3 HOH B 18 418 7 HOH HOH . F 3 HOH B 19 419 5 HOH HOH . F 3 HOH B 20 420 147 HOH HOH . F 3 HOH B 21 421 115 HOH HOH . F 3 HOH B 22 422 253 HOH HOH . F 3 HOH B 23 423 9 HOH HOH . F 3 HOH B 24 424 78 HOH HOH . F 3 HOH B 25 425 291 HOH HOH . F 3 HOH B 26 426 63 HOH HOH . F 3 HOH B 27 427 4 HOH HOH . F 3 HOH B 28 428 34 HOH HOH . F 3 HOH B 29 429 141 HOH HOH . F 3 HOH B 30 430 176 HOH HOH . F 3 HOH B 31 431 221 HOH HOH . F 3 HOH B 32 432 109 HOH HOH . F 3 HOH B 33 433 93 HOH HOH . F 3 HOH B 34 434 32 HOH HOH . F 3 HOH B 35 435 150 HOH HOH . F 3 HOH B 36 436 305 HOH HOH . F 3 HOH B 37 437 174 HOH HOH . F 3 HOH B 38 438 126 HOH HOH . F 3 HOH B 39 439 51 HOH HOH . F 3 HOH B 40 440 184 HOH HOH . F 3 HOH B 41 441 45 HOH HOH . F 3 HOH B 42 442 148 HOH HOH . F 3 HOH B 43 443 278 HOH HOH . F 3 HOH B 44 444 179 HOH HOH . F 3 HOH B 45 445 121 HOH HOH . F 3 HOH B 46 446 300 HOH HOH . F 3 HOH B 47 447 1 HOH HOH . F 3 HOH B 48 448 157 HOH HOH . F 3 HOH B 49 449 119 HOH HOH . F 3 HOH B 50 450 65 HOH HOH . F 3 HOH B 51 451 40 HOH HOH . F 3 HOH B 52 452 158 HOH HOH . F 3 HOH B 53 453 17 HOH HOH . F 3 HOH B 54 454 195 HOH HOH . F 3 HOH B 55 455 222 HOH HOH . F 3 HOH B 56 456 287 HOH HOH . F 3 HOH B 57 457 98 HOH HOH . F 3 HOH B 58 458 155 HOH HOH . F 3 HOH B 59 459 171 HOH HOH . F 3 HOH B 60 460 101 HOH HOH . F 3 HOH B 61 461 53 HOH HOH . F 3 HOH B 62 462 12 HOH HOH . F 3 HOH B 63 463 20 HOH HOH . F 3 HOH B 64 464 36 HOH HOH . F 3 HOH B 65 465 232 HOH HOH . F 3 HOH B 66 466 156 HOH HOH . F 3 HOH B 67 467 296 HOH HOH . F 3 HOH B 68 468 231 HOH HOH . F 3 HOH B 69 469 164 HOH HOH . F 3 HOH B 70 470 44 HOH HOH . F 3 HOH B 71 471 133 HOH HOH . F 3 HOH B 72 472 169 HOH HOH . F 3 HOH B 73 473 110 HOH HOH . F 3 HOH B 74 474 35 HOH HOH . F 3 HOH B 75 475 263 HOH HOH . F 3 HOH B 76 476 286 HOH HOH . F 3 HOH B 77 477 26 HOH HOH . F 3 HOH B 78 478 293 HOH HOH . F 3 HOH B 79 479 298 HOH HOH . F 3 HOH B 80 480 75 HOH HOH . F 3 HOH B 81 481 21 HOH HOH . F 3 HOH B 82 482 177 HOH HOH . F 3 HOH B 83 483 226 HOH HOH . F 3 HOH B 84 484 236 HOH HOH . F 3 HOH B 85 485 234 HOH HOH . F 3 HOH B 86 486 256 HOH HOH . F 3 HOH B 87 487 152 HOH HOH . F 3 HOH B 88 488 81 HOH HOH . F 3 HOH B 89 489 25 HOH HOH . F 3 HOH B 90 490 106 HOH HOH . F 3 HOH B 91 491 153 HOH HOH . F 3 HOH B 92 492 132 HOH HOH . F 3 HOH B 93 493 73 HOH HOH . F 3 HOH B 94 494 127 HOH HOH . F 3 HOH B 95 495 301 HOH HOH . F 3 HOH B 96 496 260 HOH HOH . F 3 HOH B 97 497 85 HOH HOH . F 3 HOH B 98 498 212 HOH HOH . F 3 HOH B 99 499 50 HOH HOH . F 3 HOH B 100 500 211 HOH HOH . F 3 HOH B 101 501 240 HOH HOH . F 3 HOH B 102 502 188 HOH HOH . F 3 HOH B 103 503 82 HOH HOH . F 3 HOH B 104 504 274 HOH HOH . F 3 HOH B 105 505 71 HOH HOH . F 3 HOH B 106 506 251 HOH HOH . F 3 HOH B 107 507 237 HOH HOH . F 3 HOH B 108 508 223 HOH HOH . F 3 HOH B 109 509 264 HOH HOH . F 3 HOH B 110 510 97 HOH HOH . F 3 HOH B 111 511 41 HOH HOH . F 3 HOH B 112 512 90 HOH HOH . F 3 HOH B 113 513 213 HOH HOH . F 3 HOH B 114 514 244 HOH HOH . F 3 HOH B 115 515 165 HOH HOH . F 3 HOH B 116 516 80 HOH HOH . F 3 HOH B 117 517 61 HOH HOH . F 3 HOH B 118 518 30 HOH HOH . F 3 HOH B 119 519 186 HOH HOH . F 3 HOH B 120 520 138 HOH HOH . F 3 HOH B 121 521 16 HOH HOH . F 3 HOH B 122 522 27 HOH HOH . F 3 HOH B 123 523 54 HOH HOH . F 3 HOH B 124 524 255 HOH HOH . F 3 HOH B 125 525 307 HOH HOH . F 3 HOH B 126 526 193 HOH HOH . F 3 HOH B 127 527 268 HOH HOH . F 3 HOH B 128 528 259 HOH HOH . F 3 HOH B 129 529 59 HOH HOH . F 3 HOH B 130 530 175 HOH HOH . F 3 HOH B 131 531 220 HOH HOH . F 3 HOH B 132 532 142 HOH HOH . F 3 HOH B 133 533 99 HOH HOH . F 3 HOH B 134 534 107 HOH HOH . F 3 HOH B 135 535 302 HOH HOH . F 3 HOH B 136 536 104 HOH HOH . F 3 HOH B 137 537 116 HOH HOH . F 3 HOH B 138 538 308 HOH HOH . F 3 HOH B 139 539 76 HOH HOH . F 3 HOH B 140 540 208 HOH HOH . F 3 HOH B 141 541 111 HOH HOH . F 3 HOH B 142 542 173 HOH HOH . F 3 HOH B 143 543 312 HOH HOH . F 3 HOH B 144 544 230 HOH HOH . F 3 HOH B 145 545 311 HOH HOH . F 3 HOH B 146 546 87 HOH HOH . F 3 HOH B 147 547 135 HOH HOH . F 3 HOH B 148 548 125 HOH HOH . F 3 HOH B 149 549 194 HOH HOH . F 3 HOH B 150 550 273 HOH HOH . F 3 HOH B 151 551 254 HOH HOH . F 3 HOH B 152 552 146 HOH HOH . F 3 HOH B 153 553 225 HOH HOH . F 3 HOH B 154 554 228 HOH HOH . F 3 HOH B 155 555 108 HOH HOH . F 3 HOH B 156 556 242 HOH HOH . F 3 HOH B 157 557 258 HOH HOH . F 3 HOH B 158 558 280 HOH HOH . F 3 HOH B 159 559 139 HOH HOH . F 3 HOH B 160 560 136 HOH HOH . F 3 HOH B 161 561 105 HOH HOH . F 3 HOH B 162 562 229 HOH HOH . F 3 HOH B 163 563 77 HOH HOH . F 3 HOH B 164 564 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DGL . . . C 2 73.988 16.658 30.785 1 13.49 ? N DGL 301 A 1 HETATM 2 C CA DGL . . . C 2 72.845 16.443 29.906 1 12.24 ? CA DGL 301 A 1 HETATM 3 C C DGL . . . C 2 71.736 17.398 30.256 1 14.91 ? C DGL 301 A 1 HETATM 4 O O DGL . . . C 2 70.564 17.138 29.925 1 13.26 ? O DGL 301 A 1 HETATM 5 C CB DGL . . . C 2 73.227 16.621 28.442 1 13.23 ? CB DGL 301 A 1 HETATM 6 C CG DGL . . . C 2 74.081 15.493 27.868 1 15.62 ? CG DGL 301 A 1 HETATM 7 C CD DGL . . . C 2 73.381 14.151 27.879 1 16.23 ? CD DGL 301 A 1 HETATM 8 O OE1 DGL . . . C 2 72.382 13.984 27.138 1 15.97 ? OE1 DGL 301 A 1 HETATM 9 O OE2 DGL . . . C 2 73.837 13.26 28.629 1 18.46 ? OE2 DGL 301 A 1 HETATM 10 O OXT DGL . . . C 2 72.017 18.431 30.882 1 15.56 ? OXT DGL 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #